[INFO] fetching crate plascad 0.7.9... [INFO] checking plascad-0.7.9 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] extracting crate plascad 0.7.9 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate plascad 0.7.9 [INFO] finished tweaking crates.io crate plascad 0.7.9 [INFO] tweaked toml for crates.io crate plascad 0.7.9 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate plascad 0.7.9 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate plascad 0.7.9 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1757711e832dc1c5279d2c3670cae097bbed0509f13cbf889425bc3bc6225010 [INFO] running `Command { std: "docker" "start" "-a" "1757711e832dc1c5279d2c3670cae097bbed0509f13cbf889425bc3bc6225010", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1757711e832dc1c5279d2c3670cae097bbed0509f13cbf889425bc3bc6225010", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1757711e832dc1c5279d2c3670cae097bbed0509f13cbf889425bc3bc6225010", kill_on_drop: false }` [INFO] [stdout] 1757711e832dc1c5279d2c3670cae097bbed0509f13cbf889425bc3bc6225010 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 617af17bb7fc978ff8f8dfdc6e1067c607148387551bfe51592fe9e986bcd933 [INFO] running `Command { std: "docker" "start" "-a" "617af17bb7fc978ff8f8dfdc6e1067c607148387551bfe51592fe9e986bcd933", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Checking once_cell v1.20.2 [INFO] [stderr] Checking bitflags v2.8.0 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Checking log v0.4.25 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Checking pin-project-lite v0.2.14 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling cc v1.1.8 [INFO] [stderr] Compiling winnow v0.5.40 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Checking libloading v0.8.4 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling cfg_aliases v0.2.1 [INFO] [stderr] Checking tracing-core v0.1.32 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Checking parking v2.2.0 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking futures-core v0.3.30 [INFO] [stderr] Checking futures-io v0.3.30 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking concurrent-queue v2.5.0 [INFO] [stderr] Checking downcast-rs v1.2.1 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking scoped-tls v1.0.1 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Checking event-listener v5.3.1 [INFO] [stderr] Compiling quick-xml v0.34.0 [INFO] [stderr] Checking fastrand v2.1.0 [INFO] [stderr] Compiling wayland-client v0.31.4 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking endi v1.1.0 [INFO] [stderr] Compiling wayland-sys v0.31.3 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Checking event-listener-strategy v0.5.2 [INFO] [stderr] Checking ttf-parser v0.24.0 [INFO] [stderr] Checking atomic-waker v1.1.2 [INFO] [stderr] Checking async-task v4.7.1 [INFO] [stderr] Checking litemap v0.7.4 [INFO] [stderr] Checking futures-lite v2.3.0 [INFO] [stderr] Checking writeable v0.5.5 [INFO] [stderr] Checking piper v0.2.3 [INFO] [stderr] Checking async-lock v3.4.0 [INFO] [stderr] Checking async-channel v2.3.1 [INFO] [stderr] Compiling nix v0.29.0 [INFO] [stderr] Compiling syn v2.0.91 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Checking ab_glyph_rasterizer v0.1.8 [INFO] [stderr] Compiling khronos_api v3.1.0 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Checking futures-sink v0.3.30 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking futures-task v0.3.30 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking cpufeatures v0.2.12 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Checking icu_locid_transform_data v1.5.0 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking miniz_oxide v0.8.8 [INFO] [stderr] Checking async-broadcast v0.7.2 [INFO] [stderr] Checking ordered-stream v0.2.0 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling smithay-client-toolkit v0.19.2 [INFO] [stderr] Checking icu_properties_data v1.5.0 [INFO] [stderr] Compiling wayland-backend v0.3.5 [INFO] [stderr] Compiling xml-rs v0.8.20 [INFO] [stderr] Checking xkeysym v0.2.1 [INFO] [stderr] Checking accesskit v0.17.1 [INFO] [stderr] Checking cursor-icon v1.1.0 [INFO] [stderr] Checking blocking v1.6.1 [INFO] [stderr] Checking async-executor v1.12.0 [INFO] [stderr] Checking xcursor v0.3.5 [INFO] [stderr] Checking hex v0.4.3 [INFO] [stderr] Compiling wayland-scanner v0.31.3 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Compiling x11-dl v2.21.0 [INFO] [stderr] Checking async-fs v2.1.2 [INFO] [stderr] Checking utf16_iter v1.0.5 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Checking icu_normalizer_data v1.5.0 [INFO] [stderr] Checking x11rb-protocol v0.13.1 [INFO] [stderr] Checking as-raw-xcb-connection v1.0.1 [INFO] [stderr] Checking write16 v1.0.0 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Compiling ring v0.17.8 [INFO] [stderr] Checking strict-num v0.1.1 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Checking arrayref v0.3.7 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling gl_generator v0.14.0 [INFO] [stderr] Compiling unicase v2.7.0 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking profiling v1.0.16 [INFO] [stderr] Checking flate2 v1.1.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Checking rustls-pki-types v1.11.0 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking sha1 v0.10.6 [INFO] [stderr] Checking xdg-home v1.2.0 [INFO] [stderr] Checking memmap2 v0.9.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking foldhash v0.1.4 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking epaint_default_fonts v0.31.0 [INFO] [stderr] Checking nohash-hasher v0.2.0 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Checking hashbrown v0.15.2 [INFO] [stderr] Checking immutable-chunkmap v2.0.6 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling winit v0.30.9 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling httparse v1.10.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking raw-window-handle v0.6.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking untrusted v0.9.0 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling glutin_egl_sys v0.7.0 [INFO] [stderr] Checking accesskit_consumer v0.26.0 [INFO] [stderr] Checking miniz_oxide v0.7.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling glutin_glx_sys v0.6.0 [INFO] [stderr] Checking fdeflate v0.3.4 [INFO] [stderr] Checking owned_ttf_parser v0.24.0 [INFO] [stderr] Checking xkbcommon-dl v0.4.2 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking ab_glyph v0.2.28 [INFO] [stderr] Compiling winnow v0.6.26 [INFO] [stderr] Checking home v0.5.9 [INFO] [stderr] Compiling rustls v0.23.23 [INFO] [stderr] Checking dpi v0.1.1 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking smol_str v0.2.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking regex-syntax v0.8.4 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking bytes v1.6.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking png v0.17.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling glutin v0.32.1 [INFO] [stderr] Checking http v1.2.0 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Checking subtle v2.6.1 [INFO] [stderr] Checking zeroize v1.8.1 [INFO] [stderr] Checking unty v0.0.4 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling mime_guess2 v2.0.5 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking webpki-roots v0.26.8 [INFO] [stderr] Checking rustls-pemfile v2.2.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking bincode v2.0.1 [INFO] [stderr] Compiling glutin-winit v0.5.0 [INFO] [stderr] Checking option-ext v0.2.0 [INFO] [stderr] Checking utf-8 v0.7.6 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking ureq-proto v0.4.1 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking rustls-webpki v0.102.8 [INFO] [stderr] Checking rand v0.9.1 [INFO] [stderr] Checking dirs-sys v0.5.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking web-time v1.1.0 [INFO] [stderr] Checking mime v0.3.17 [INFO] [stderr] Compiling litrs v0.4.1 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking glow v0.16.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling zvariant_utils v2.1.0 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling document-features v0.2.10 [INFO] [stderr] Checking regex-automata v0.4.7 [INFO] [stderr] Checking directories v6.0.0 [INFO] [stderr] Checking sysinfo v0.35.1 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking lin_alg v1.1.10 [INFO] [stderr] Checking nom v8.0.0 [INFO] [stderr] Checking dunce v1.0.5 [INFO] [stderr] Checking iana-time-zone v0.1.60 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking strum v0.27.1 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling bytemuck_derive v1.7.0 [INFO] [stderr] Compiling enumflags2_derive v0.7.10 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling futures-macro v0.3.30 [INFO] [stderr] Compiling serde_repr v0.1.19 [INFO] [stderr] Compiling async-trait v0.1.81 [INFO] [stderr] Checking wayland-csd-frame v0.3.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Checking regex v1.10.5 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking bytemuck v1.21.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking polling v3.7.2 [INFO] [stderr] Checking ureq v3.0.11 [INFO] [stderr] Checking bgzip v0.3.1 [INFO] [stderr] Checking zerofrom v0.1.5 [INFO] [stderr] Compiling strum_macros v0.27.1 [INFO] [stderr] Checking emath v0.31.0 [INFO] [stderr] Checking calloop v0.13.0 [INFO] [stderr] Checking wayland-protocols v0.32.2 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Checking async-io v2.3.3 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Checking zerovec v0.10.4 [INFO] [stderr] Checking wayland-cursor v0.31.4 [INFO] [stderr] Checking tiny-skia-path v0.11.4 [INFO] [stderr] Checking ecolor v0.31.0 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking epaint v0.31.0 [INFO] [stderr] Checking calloop-wayland-source v0.3.0 [INFO] [stderr] Checking image v0.25.1 [INFO] [stderr] Checking wide v0.7.26 [INFO] [stderr] Checking gb-io v0.9.0 [INFO] [stderr] Checking tiny-skia v0.11.4 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking egui v0.31.0 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Checking enumflags2 v0.7.10 [INFO] [stderr] Checking quick-xml v0.30.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking quick-xml v0.37.1 [INFO] [stderr] Checking egui_glow v0.31.0 [INFO] [stderr] Checking egui-file-dialog v0.10.0 [INFO] [stderr] Checking egui_extras v0.31.0 [INFO] [stderr] Checking wayland-protocols-wlr v0.3.2 [INFO] [stderr] Checking wayland-protocols-plasma v0.3.2 [INFO] [stderr] Checking x11rb v0.13.1 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Compiling toml_datetime v0.6.6 [INFO] [stderr] Compiling serde_spanned v0.6.7 [INFO] [stderr] Compiling toml_edit v0.21.1 [INFO] [stderr] Compiling toml_edit v0.22.16 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking webbrowser v1.0.4 [INFO] [stderr] Checking arboard v3.4.0 [INFO] [stderr] Checking x11-clipboard v0.9.2 [INFO] [stderr] Checking sctk-adwaita v0.10.1 [INFO] [stderr] Checking smithay-clipboard v0.7.2 [INFO] [stderr] Checking copypasta v0.10.1 [INFO] [stderr] Compiling proc-macro-crate v3.1.0 [INFO] [stderr] Compiling zvariant_derive v4.2.0 [INFO] [stderr] Compiling zbus_macros v4.4.0 [INFO] [stderr] Compiling num_enum_derive v0.7.3 [INFO] [stderr] Compiling toml v0.8.15 [INFO] [stderr] Compiling winresource v0.1.20 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking zvariant v4.2.0 [INFO] [stderr] Checking num_enum v0.7.3 [INFO] [stderr] Checking na_seq v0.2.8 [INFO] [stderr] Compiling plascad v0.7.9 (/opt/rustwide/workdir) [INFO] [stderr] Checking bio_apis v0.1.3 [INFO] [stderr] Checking zbus_names v3.0.0 [INFO] [stderr] Checking zbus_xml v4.0.0 [INFO] [stderr] Checking zbus v4.4.0 [INFO] [stderr] Checking zbus-lockstep v0.4.4 [INFO] [stderr] Compiling zbus-lockstep-macros v0.4.4 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.3.0 [INFO] [stderr] Checking atspi-common v0.6.0 [INFO] [stderr] Checking atspi-proxies v0.6.0 [INFO] [stderr] Checking accesskit_atspi_common v0.10.1 [INFO] [stderr] Checking bio_files v0.1.0 [INFO] [stderr] Checking atspi-connection v0.6.0 [INFO] [stderr] Checking atspi v0.22.0 [INFO] [stderr] Checking accesskit_unix v0.13.1 [INFO] [stderr] Checking accesskit_winit v0.23.1 [INFO] [stderr] Checking egui-winit v0.31.0 [INFO] [stderr] Checking eframe v0.31.0 [INFO] [stdout] warning: unused import: `copypasta::ClipboardProvider` [INFO] [stdout] --> src/main.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | use copypasta::ClipboardProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/main.rs:41:34 [INFO] [stdout] | [INFO] [stdout] 41 | navigation::{PageSeqTop, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufRead` [INFO] [stdout] --> src/alignment_map.rs:9:10 [INFO] [stdout] | [INFO] [stdout] 9 | io::{BufRead, ErrorKind, Read}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BGZFError`, `BGZFReader`, `index::BGZFIndex`, and `read::IndexedBGZFReader` [INFO] [stdout] --> src/alignment_map.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | use bgzip::{BGZFError, BGZFReader, index::BGZFIndex, read::IndexedBGZFReader}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `MultiGzDecoder` [INFO] [stdout] --> src/alignment_map.rs:14:31 [INFO] [stdout] | [INFO] [stdout] 14 | use flate2::read::{GzDecoder, MultiGzDecoder}; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `make_cloning_primers` [INFO] [stdout] --> src/backbones.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | make_cloning_primers, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `sync::Arc` [INFO] [stdout] --> src/file_io/mod.rs:3:23 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{path::Path, sync::Arc}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::PathBuf` [INFO] [stdout] --> src/gui/mod.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::path::PathBuf; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::borrow::Cow` [INFO] [stdout] --> src/gui/cloning.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::borrow::Cow; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Grid` and `Vec2` [INFO] [stdout] --> src/gui/cloning.rs:5:31 [INFO] [stdout] | [INFO] [stdout] 5 | Color32, ComboBox, Frame, Grid, RichText, ScrollArea, Stroke, TextEdit, Ui, Vec2, [INFO] [stdout] | ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `insert_into_seq` [INFO] [stdout] --> src/gui/cloning.rs:7:26 [INFO] [stdout] | [INFO] [stdout] 7 | use na_seq::{Nucleotide, insert_into_seq, seq_from_str, seq_to_str_lower}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FeatureType` [INFO] [stdout] --> src/gui/cloning.rs:24:27 [INFO] [stdout] | [INFO] [stdout] 24 | misc_types::{Feature, FeatureType}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/input.rs:3:16 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{mem, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `QUICKSAVE_FILE` and `StateToSave` [INFO] [stdout] --> src/gui/input.rs:12:16 [INFO] [stdout] | [INFO] [stdout] 12 | save::{QUICKSAVE_FILE, StateToSave, load_import}, [INFO] [stdout] | ^^^^^^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/ligation.rs:3:33 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{collections::HashMap, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ligation` [INFO] [stdout] --> src/gui/ligation.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | ligation, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `state::State` [INFO] [stdout] --> src/gui/lin_maps.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | state::State, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/gui/lin_maps.rs:56:5 [INFO] [stdout] | [INFO] [stdout] 56 | /// Used to assist with splitting features around the origin [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 57 | let stroke = Stroke::new(FEATURE_STROKE_WIDTH, stroke_color); [INFO] [stdout] | ------------------------------------------------------------- rustdoc does not generate documentation for statements [INFO] [stdout] | [INFO] [stdout] = help: use `//` for a plain comment [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Color32` [INFO] [stdout] --> src/gui/pcr.rs:3:20 [INFO] [stdout] | [INFO] [stdout] 3 | use eframe::egui::{Color32, ComboBox, Grid, RichText, TextEdit, Ui, Vec2}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `env` and `path::Path` [INFO] [stdout] --> src/gui/save.rs:3:11 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{env, path::Path}; [INFO] [stdout] | ^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `epaint::PathStroke` [INFO] [stdout] --> src/gui/sequence/seq_view.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | epaint::PathStroke, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/pcr.rs:7:38 [INFO] [stdout] | [INFO] [stdout] 7 | gui::navigation::{Page, PageSeq, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::protein::proteins_from_seq` [INFO] [stdout] --> src/toxic_proteins.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::protein::proteins_from_seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `copypasta::ClipboardProvider` [INFO] [stdout] --> src/main.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | use copypasta::ClipboardProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/main.rs:41:34 [INFO] [stdout] | [INFO] [stdout] 41 | navigation::{PageSeqTop, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufRead` [INFO] [stdout] --> src/alignment_map.rs:9:10 [INFO] [stdout] | [INFO] [stdout] 9 | io::{BufRead, ErrorKind, Read}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BGZFError`, `BGZFReader`, `index::BGZFIndex`, and `read::IndexedBGZFReader` [INFO] [stdout] --> src/alignment_map.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | use bgzip::{BGZFError, BGZFReader, index::BGZFIndex, read::IndexedBGZFReader}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `MultiGzDecoder` [INFO] [stdout] --> src/alignment_map.rs:14:31 [INFO] [stdout] | [INFO] [stdout] 14 | use flate2::read::{GzDecoder, MultiGzDecoder}; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `make_cloning_primers` [INFO] [stdout] --> src/backbones.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | make_cloning_primers, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `sync::Arc` [INFO] [stdout] --> src/file_io/mod.rs:3:23 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{path::Path, sync::Arc}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::PathBuf` [INFO] [stdout] --> src/gui/mod.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::path::PathBuf; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::borrow::Cow` [INFO] [stdout] --> src/gui/cloning.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::borrow::Cow; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Grid` and `Vec2` [INFO] [stdout] --> src/gui/cloning.rs:5:31 [INFO] [stdout] | [INFO] [stdout] 5 | Color32, ComboBox, Frame, Grid, RichText, ScrollArea, Stroke, TextEdit, Ui, Vec2, [INFO] [stdout] | ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `insert_into_seq` [INFO] [stdout] --> src/gui/cloning.rs:7:26 [INFO] [stdout] | [INFO] [stdout] 7 | use na_seq::{Nucleotide, insert_into_seq, seq_from_str, seq_to_str_lower}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FeatureType` [INFO] [stdout] --> src/gui/cloning.rs:24:27 [INFO] [stdout] | [INFO] [stdout] 24 | misc_types::{Feature, FeatureType}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/input.rs:3:16 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{mem, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `QUICKSAVE_FILE` and `StateToSave` [INFO] [stdout] --> src/gui/input.rs:12:16 [INFO] [stdout] | [INFO] [stdout] 12 | save::{QUICKSAVE_FILE, StateToSave, load_import}, [INFO] [stdout] | ^^^^^^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/ligation.rs:3:33 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{collections::HashMap, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ligation` [INFO] [stdout] --> src/gui/ligation.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | ligation, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `state::State` [INFO] [stdout] --> src/gui/lin_maps.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 22 | state::State, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/gui/lin_maps.rs:56:5 [INFO] [stdout] | [INFO] [stdout] 56 | /// Used to assist with splitting features around the origin [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 57 | let stroke = Stroke::new(FEATURE_STROKE_WIDTH, stroke_color); [INFO] [stdout] | ------------------------------------------------------------- rustdoc does not generate documentation for statements [INFO] [stdout] | [INFO] [stdout] = help: use `//` for a plain comment [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Color32` [INFO] [stdout] --> src/gui/pcr.rs:3:20 [INFO] [stdout] | [INFO] [stdout] 3 | use eframe::egui::{Color32, ComboBox, Grid, RichText, TextEdit, Ui, Vec2}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `env` and `path::Path` [INFO] [stdout] --> src/gui/save.rs:3:11 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{env, path::Path}; [INFO] [stdout] | ^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `epaint::PathStroke` [INFO] [stdout] --> src/gui/sequence/seq_view.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | epaint::PathStroke, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/pcr.rs:7:38 [INFO] [stdout] | [INFO] [stdout] 7 | gui::navigation::{Page, PageSeq, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::protein::proteins_from_seq` [INFO] [stdout] --> src/toxic_proteins.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::protein::proteins_from_seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/circle.rs:921:16 [INFO] [stdout] | [INFO] [stdout] 921 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/cloning.rs:101:16 [INFO] [stdout] | [INFO] [stdout] 101 | Frame::none() [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/feature_table.rs:96:16 [INFO] [stdout] | [INFO] [stdout] 96 | Frame::none() [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/circle.rs:921:16 [INFO] [stdout] | [INFO] [stdout] 921 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/cloning.rs:101:16 [INFO] [stdout] | [INFO] [stdout] 101 | Frame::none() [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/feature_table.rs:96:16 [INFO] [stdout] | [INFO] [stdout] 96 | Frame::none() [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/sequence/mod.rs:166:20 [INFO] [stdout] | [INFO] [stdout] 166 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/sequence/mod.rs:174:20 [INFO] [stdout] | [INFO] [stdout] 174 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/sequence/mod.rs:166:20 [INFO] [stdout] | [INFO] [stdout] 166 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `eframe::egui::Frame::none`: Use `Frame::NONE` or `Frame::new()` instead. [INFO] [stdout] --> src/gui/sequence/mod.rs:174:20 [INFO] [stdout] | [INFO] [stdout] 174 | Frame::none().show(ui, |ui| { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `qual` [INFO] [stdout] --> src/alignment_map.rs:130:13 [INFO] [stdout] | [INFO] [stdout] 130 | let qual = buf[i..i + l_seq].to_vec(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_qual` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `i` is never read [INFO] [stdout] --> src/alignment_map.rs:131:9 [INFO] [stdout] | [INFO] [stdout] 131 | i += l_seq; [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:171:13 [INFO] [stdout] | [INFO] [stdout] 171 | let mut his_tag = None; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_composite` [INFO] [stdout] --> src/backbones.rs:237:33 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_composite` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_i` [INFO] [stdout] --> src/backbones.rs:238:33 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:237:29 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:238:29 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `host` [INFO] [stdout] --> src/backbones.rs:341:25 [INFO] [stdout] | [INFO] [stdout] 341 | if let Some(host) = self.host {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_host` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `re_lib` [INFO] [stdout] --> src/cloning.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | re_lib: &[RestrictionEnzyme], [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_re_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cloning.rs:252:9 [INFO] [stdout] | [INFO] [stdout] 252 | let mut insert = state.ui.cloning_insert.seq_insert.clone(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `qual` [INFO] [stdout] --> src/alignment_map.rs:130:13 [INFO] [stdout] | [INFO] [stdout] 130 | let qual = buf[i..i + l_seq].to_vec(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_qual` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `i` is never read [INFO] [stdout] --> src/alignment_map.rs:131:9 [INFO] [stdout] | [INFO] [stdout] 131 | i += l_seq; [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:171:13 [INFO] [stdout] | [INFO] [stdout] 171 | let mut his_tag = None; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_composite` [INFO] [stdout] --> src/backbones.rs:237:33 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_composite` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_i` [INFO] [stdout] --> src/backbones.rs:238:33 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:237:29 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:238:29 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `host` [INFO] [stdout] --> src/backbones.rs:341:25 [INFO] [stdout] | [INFO] [stdout] 341 | if let Some(host) = self.host {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_host` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `re_lib` [INFO] [stdout] --> src/cloning.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | re_lib: &[RestrictionEnzyme], [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_re_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cloning.rs:252:9 [INFO] [stdout] | [INFO] [stdout] 252 | let mut insert = state.ui.cloning_insert.seq_insert.clone(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_nts` [INFO] [stdout] --> src/gui/ab1.rs:48:29 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_nts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/ab1.rs:48:45 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fonts` [INFO] [stdout] --> src/gui/ab1.rs:159:41 [INFO] [stdout] | [INFO] [stdout] 159 | result.push(ui.ctx().fonts(|fonts| { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_fonts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rect_size` [INFO] [stdout] --> src/gui/ab1.rs:266:17 [INFO] [stdout] | [INFO] [stdout] 266 | let rect_size = response.rect.size(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rect_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `border_width` [INFO] [stdout] --> src/gui/cloning.rs:218:21 [INFO] [stdout] | [INFO] [stdout] 218 | let mut border_width = 0.; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_border_width` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/cloning.rs:218:17 [INFO] [stdout] | [INFO] [stdout] 218 | let mut border_width = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:135:30 [INFO] [stdout] | [INFO] [stdout] 135 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_nts` [INFO] [stdout] --> src/gui/ab1.rs:48:29 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_nts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/ab1.rs:48:45 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fonts` [INFO] [stdout] --> src/gui/ab1.rs:159:41 [INFO] [stdout] | [INFO] [stdout] 159 | result.push(ui.ctx().fonts(|fonts| { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_fonts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rect_size` [INFO] [stdout] --> src/gui/ab1.rs:266:17 [INFO] [stdout] | [INFO] [stdout] 266 | let rect_size = response.rect.size(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rect_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `border_width` [INFO] [stdout] --> src/gui/cloning.rs:218:21 [INFO] [stdout] | [INFO] [stdout] 218 | let mut border_width = 0.; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_border_width` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/cloning.rs:218:17 [INFO] [stdout] | [INFO] [stdout] 218 | let mut border_width = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:135:30 [INFO] [stdout] | [INFO] [stdout] 135 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence/mod.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence/mod.rs:66:46 [INFO] [stdout] | [INFO] [stdout] 66 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/portions.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let mut result = Self { [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence/mod.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence/mod.rs:66:46 [INFO] [stdout] | [INFO] [stdout] 66 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:146:26 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:150:18 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:26 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:46 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `RefSeq` is more private than the item `AlignmentMap::refs` [INFO] [stdout] --> src/alignment_map.rs:168:5 [INFO] [stdout] | [INFO] [stdout] 168 | pub refs: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ field `AlignmentMap::refs` is reachable at visibility `pub(crate)` [INFO] [stdout] | [INFO] [stdout] note: but type `RefSeq` is only usable at visibility `pub(self)` [INFO] [stdout] --> src/alignment_map.rs:27:1 [INFO] [stdout] | [INFO] [stdout] 27 | struct RefSeq { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(private_interfaces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `alignment_map::Alignment` is more private than the item `AlignmentMap::alignments` [INFO] [stdout] --> src/alignment_map.rs:169:5 [INFO] [stdout] | [INFO] [stdout] 169 | pub alignments: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ field `AlignmentMap::alignments` is reachable at visibility `pub(crate)` [INFO] [stdout] | [INFO] [stdout] note: but type `alignment_map::Alignment` is only usable at visibility `pub(self)` [INFO] [stdout] --> src/alignment_map.rs:61:1 [INFO] [stdout] | [INFO] [stdout] 61 | struct Alignment { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/portions.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let mut result = Self { [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `BoundedLevenshtein` is never constructed [INFO] [stdout] --> src/alignment.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 48 | pub enum DistanceType { [INFO] [stdout] | ------------ variant in this enum [INFO] [stdout] ... [INFO] [stdout] 52 | BoundedLevenshtein(u32), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DistanceType` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAGIC` is never used [INFO] [stdout] --> src/alignment_map.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const MAGIC: [u8; 4] = [b'B', b'A', b'M', 1]; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RefSeq` is never constructed [INFO] [stdout] --> src/alignment_map.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | struct RefSeq { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf` are never used [INFO] [stdout] --> src/alignment_map.rs:34:12 [INFO] [stdout] | [INFO] [stdout] 32 | impl RefSeq { [INFO] [stdout] | ----------- associated items in this implementation [INFO] [stdout] 33 | /// Deserialize from BAM. [INFO] [stdout] 34 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 47 | pub fn to_buf(&self) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AuxData` is never constructed [INFO] [stdout] --> src/alignment_map.rs:53:8 [INFO] [stdout] | [INFO] [stdout] 53 | struct AuxData { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Alignment` is never constructed [INFO] [stdout] --> src/alignment_map.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | struct Alignment { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf_` are never used [INFO] [stdout] --> src/alignment_map.rs:82:12 [INFO] [stdout] | [INFO] [stdout] 80 | impl Alignment { [INFO] [stdout] | -------------- associated items in this implementation [INFO] [stdout] 81 | /// Deserialize from BAM. [INFO] [stdout] 82 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 155 | pub fn to_buf_(&self) -> Vec { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AlignmentMap` is never constructed [INFO] [stdout] --> src/alignment_map.rs:164:12 [INFO] [stdout] | [INFO] [stdout] 164 | pub struct AlignmentMap { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf` are never used [INFO] [stdout] --> src/alignment_map.rs:174:12 [INFO] [stdout] | [INFO] [stdout] 172 | impl AlignmentMap { [INFO] [stdout] | ----------------- associated items in this implementation [INFO] [stdout] 173 | /// Deserialize an alignment record from a buffer containing BAM data. [INFO] [stdout] 174 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 226 | pub fn to_buf(&self) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import` is never used [INFO] [stdout] --> src/alignment_map.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 231 | pub fn import(path: &Path) -> io::Result { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `reg_to_bin` is never used [INFO] [stdout] --> src/alignment_map.rs:331:4 [INFO] [stdout] | [INFO] [stdout] 331 | fn reg_to_bin(beg: i32, end: i32) -> i32 { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `reg_to_bins` is never used [INFO] [stdout] --> src/alignment_map.rs:353:4 [INFO] [stdout] | [INFO] [stdout] 353 | fn reg_to_bins(beg: i32, end: i32, list: &mut Vec) -> usize { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `Gfp` and `Luciferase` are never constructed [INFO] [stdout] --> src/backbones.rs:121:5 [INFO] [stdout] | [INFO] [stdout] 120 | pub enum BackboneGene { [INFO] [stdout] | ------------ variants in this enum [INFO] [stdout] 121 | Gfp, [INFO] [stdout] | ^^^ [INFO] [stdout] 122 | Egfp, [INFO] [stdout] 123 | Luciferase, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BackboneGene` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `RestrictionEnzyme` is never constructed [INFO] [stdout] --> src/backbones.rs:131:5 [INFO] [stdout] | [INFO] [stdout] 130 | pub enum CloningTechnique { [INFO] [stdout] | ---------------- variant in this enum [INFO] [stdout] 131 | RestrictionEnzyme, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `CloningTechnique` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `genes_included` and `direction` are never read [INFO] [stdout] --> src/backbones.rs:151:9 [INFO] [stdout] | [INFO] [stdout] 135 | pub struct Backbone { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 151 | pub genes_included: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | pub direction: PrimerDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `product_primers` is never read [INFO] [stdout] --> src/cloning.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct CloningState { [INFO] [stdout] | ------------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 53 | pub product_primers: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get_backbone` is never used [INFO] [stdout] --> src/cloning.rs:137:12 [INFO] [stdout] | [INFO] [stdout] 75 | impl CloningState { [INFO] [stdout] | ----------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 137 | pub fn get_backbone<'a>(&'a self, lib: &'a [Backbone]) -> Option<&'a Backbone> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_re_candidates` is never used [INFO] [stdout] --> src/cloning.rs:362:8 [INFO] [stdout] | [INFO] [stdout] 362 | pub fn find_re_candidates<'a>( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TagSeqRecord` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum TagSeqRecord { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 13 | impl TagSeqRecord { [INFO] [stdout] | ----------------- associated function in this implementation [INFO] [stdout] 14 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `GeneralTag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:26:6 [INFO] [stdout] | [INFO] [stdout] 26 | enum GeneralTag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:117:8 [INFO] [stdout] | [INFO] [stdout] 116 | impl GeneralTag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 117 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3130Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:221:6 [INFO] [stdout] | [INFO] [stdout] 221 | enum Abi3130Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 230 | impl Abi3130Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 231 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3530Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:263:6 [INFO] [stdout] | [INFO] [stdout] 263 | enum Abi3530Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 370 | impl Abi3530Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 371 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3730Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:599:6 [INFO] [stdout] | [INFO] [stdout] 599 | enum Abi3730Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:604:8 [INFO] [stdout] | [INFO] [stdout] 603 | impl Abi3730Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 604 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `save_new_product` is never used [INFO] [stdout] --> src/file_io/save.rs:265:8 [INFO] [stdout] | [INFO] [stdout] 265 | pub fn save_new_product(name: &str, state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `NT_COLOR` is never used [INFO] [stdout] --> src/gui/ab1.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const NT_COLOR: Color32 = Color32::from_rgb(180, 220, 220); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:476:12 [INFO] [stdout] | [INFO] [stdout] 457 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 476 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 485 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:146:8 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:150:8 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/state.rs:482:9 [INFO] [stdout] | [INFO] [stdout] 478 | pub struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 482 | pub tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_TRACT_SCAN_FRAME` is never used [INFO] [stdout] --> src/toxic_proteins.rs:10:7 [INFO] [stdout] | [INFO] [stdout] 10 | const GLN_TRACT_SCAN_FRAME: usize = 35; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_MAX_PORTION` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const GLN_MAX_PORTION: f32 = 0.75; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `ToxicStatus` is never used [INFO] [stdout] --> src/toxic_proteins.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | enum ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_glu_tracts` is never used [INFO] [stdout] --> src/toxic_proteins.rs:27:4 [INFO] [stdout] | [INFO] [stdout] 27 | fn check_glu_tracts(seq: &[Nucleotide]) -> ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:23:7 [INFO] [stdout] | [INFO] [stdout] 23 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:146:26 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:150:18 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:26 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:46 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `RefSeq` is more private than the item `AlignmentMap::refs` [INFO] [stdout] --> src/alignment_map.rs:168:5 [INFO] [stdout] | [INFO] [stdout] 168 | pub refs: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ field `AlignmentMap::refs` is reachable at visibility `pub(crate)` [INFO] [stdout] | [INFO] [stdout] note: but type `RefSeq` is only usable at visibility `pub(self)` [INFO] [stdout] --> src/alignment_map.rs:27:1 [INFO] [stdout] | [INFO] [stdout] 27 | struct RefSeq { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(private_interfaces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 14s [INFO] [stdout] warning: type `alignment_map::Alignment` is more private than the item `AlignmentMap::alignments` [INFO] [stdout] --> src/alignment_map.rs:169:5 [INFO] [stdout] | [INFO] [stdout] 169 | pub alignments: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ field `AlignmentMap::alignments` is reachable at visibility `pub(crate)` [INFO] [stdout] | [INFO] [stdout] note: but type `alignment_map::Alignment` is only usable at visibility `pub(self)` [INFO] [stdout] --> src/alignment_map.rs:61:1 [INFO] [stdout] | [INFO] [stdout] 61 | struct Alignment { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `BoundedLevenshtein` is never constructed [INFO] [stdout] --> src/alignment.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 48 | pub enum DistanceType { [INFO] [stdout] | ------------ variant in this enum [INFO] [stdout] ... [INFO] [stdout] 52 | BoundedLevenshtein(u32), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DistanceType` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAGIC` is never used [INFO] [stdout] --> src/alignment_map.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const MAGIC: [u8; 4] = [b'B', b'A', b'M', 1]; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RefSeq` is never constructed [INFO] [stdout] --> src/alignment_map.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | struct RefSeq { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf` are never used [INFO] [stdout] --> src/alignment_map.rs:34:12 [INFO] [stdout] | [INFO] [stdout] 32 | impl RefSeq { [INFO] [stdout] | ----------- associated items in this implementation [INFO] [stdout] 33 | /// Deserialize from BAM. [INFO] [stdout] 34 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 47 | pub fn to_buf(&self) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AuxData` is never constructed [INFO] [stdout] --> src/alignment_map.rs:53:8 [INFO] [stdout] | [INFO] [stdout] 53 | struct AuxData { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Alignment` is never constructed [INFO] [stdout] --> src/alignment_map.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | struct Alignment { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf_` are never used [INFO] [stdout] --> src/alignment_map.rs:82:12 [INFO] [stdout] | [INFO] [stdout] 80 | impl Alignment { [INFO] [stdout] | -------------- associated items in this implementation [INFO] [stdout] 81 | /// Deserialize from BAM. [INFO] [stdout] 82 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 155 | pub fn to_buf_(&self) -> Vec { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AlignmentMap` is never constructed [INFO] [stdout] --> src/alignment_map.rs:164:12 [INFO] [stdout] | [INFO] [stdout] 164 | pub struct AlignmentMap { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `from_buf` and `to_buf` are never used [INFO] [stdout] --> src/alignment_map.rs:174:12 [INFO] [stdout] | [INFO] [stdout] 172 | impl AlignmentMap { [INFO] [stdout] | ----------------- associated items in this implementation [INFO] [stdout] 173 | /// Deserialize an alignment record from a buffer containing BAM data. [INFO] [stdout] 174 | pub fn from_buf(buf: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 226 | pub fn to_buf(&self) -> Vec { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import` is never used [INFO] [stdout] --> src/alignment_map.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 231 | pub fn import(path: &Path) -> io::Result { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `reg_to_bin` is never used [INFO] [stdout] --> src/alignment_map.rs:331:4 [INFO] [stdout] | [INFO] [stdout] 331 | fn reg_to_bin(beg: i32, end: i32) -> i32 { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `reg_to_bins` is never used [INFO] [stdout] --> src/alignment_map.rs:353:4 [INFO] [stdout] | [INFO] [stdout] 353 | fn reg_to_bins(beg: i32, end: i32, list: &mut Vec) -> usize { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `Gfp` and `Luciferase` are never constructed [INFO] [stdout] --> src/backbones.rs:121:5 [INFO] [stdout] | [INFO] [stdout] 120 | pub enum BackboneGene { [INFO] [stdout] | ------------ variants in this enum [INFO] [stdout] 121 | Gfp, [INFO] [stdout] | ^^^ [INFO] [stdout] 122 | Egfp, [INFO] [stdout] 123 | Luciferase, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BackboneGene` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `RestrictionEnzyme` is never constructed [INFO] [stdout] --> src/backbones.rs:131:5 [INFO] [stdout] | [INFO] [stdout] 130 | pub enum CloningTechnique { [INFO] [stdout] | ---------------- variant in this enum [INFO] [stdout] 131 | RestrictionEnzyme, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `CloningTechnique` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `genes_included` and `direction` are never read [INFO] [stdout] --> src/backbones.rs:151:9 [INFO] [stdout] | [INFO] [stdout] 135 | pub struct Backbone { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 151 | pub genes_included: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | pub direction: PrimerDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `product_primers` is never read [INFO] [stdout] --> src/cloning.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct CloningState { [INFO] [stdout] | ------------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 53 | pub product_primers: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get_backbone` is never used [INFO] [stdout] --> src/cloning.rs:137:12 [INFO] [stdout] | [INFO] [stdout] 75 | impl CloningState { [INFO] [stdout] | ----------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 137 | pub fn get_backbone<'a>(&'a self, lib: &'a [Backbone]) -> Option<&'a Backbone> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_re_candidates` is never used [INFO] [stdout] --> src/cloning.rs:362:8 [INFO] [stdout] | [INFO] [stdout] 362 | pub fn find_re_candidates<'a>( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TagSeqRecord` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum TagSeqRecord { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 13 | impl TagSeqRecord { [INFO] [stdout] | ----------------- associated function in this implementation [INFO] [stdout] 14 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `GeneralTag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:26:6 [INFO] [stdout] | [INFO] [stdout] 26 | enum GeneralTag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:117:8 [INFO] [stdout] | [INFO] [stdout] 116 | impl GeneralTag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 117 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3130Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:221:6 [INFO] [stdout] | [INFO] [stdout] 221 | enum Abi3130Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 230 | impl Abi3130Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 231 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3530Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:263:6 [INFO] [stdout] | [INFO] [stdout] 263 | enum Abi3530Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 370 | impl Abi3530Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 371 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3730Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:599:6 [INFO] [stdout] | [INFO] [stdout] 599 | enum Abi3730Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:604:8 [INFO] [stdout] | [INFO] [stdout] 603 | impl Abi3730Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 604 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `save_new_product` is never used [INFO] [stdout] --> src/file_io/save.rs:265:8 [INFO] [stdout] | [INFO] [stdout] 265 | pub fn save_new_product(name: &str, state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `NT_COLOR` is never used [INFO] [stdout] --> src/gui/ab1.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const NT_COLOR: Color32 = Color32::from_rgb(180, 220, 220); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:476:12 [INFO] [stdout] | [INFO] [stdout] 457 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 476 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 485 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:146:8 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:150:8 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/state.rs:482:9 [INFO] [stdout] | [INFO] [stdout] 478 | pub struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 482 | pub tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_TRACT_SCAN_FRAME` is never used [INFO] [stdout] --> src/toxic_proteins.rs:10:7 [INFO] [stdout] | [INFO] [stdout] 10 | const GLN_TRACT_SCAN_FRAME: usize = 35; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_MAX_PORTION` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const GLN_MAX_PORTION: f32 = 0.75; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `ToxicStatus` is never used [INFO] [stdout] --> src/toxic_proteins.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | enum ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_glu_tracts` is never used [INFO] [stdout] --> src/toxic_proteins.rs:27:4 [INFO] [stdout] | [INFO] [stdout] 27 | fn check_glu_tracts(seq: &[Nucleotide]) -> ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:23:7 [INFO] [stdout] | [INFO] [stdout] 23 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "617af17bb7fc978ff8f8dfdc6e1067c607148387551bfe51592fe9e986bcd933", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "617af17bb7fc978ff8f8dfdc6e1067c607148387551bfe51592fe9e986bcd933", kill_on_drop: false }` [INFO] [stdout] 617af17bb7fc978ff8f8dfdc6e1067c607148387551bfe51592fe9e986bcd933