[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] checking ncbi-vdb-sys-0.1.6 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-2-tc2/source [INFO] removed /workspace/builds/worker-2-tc2/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 46957a3c3e1fd1b31ce3ba91dfd3562d5bbf641c2287883d3b801f72d634e334 [INFO] running `Command { std: "docker" "start" "-a" "46957a3c3e1fd1b31ce3ba91dfd3562d5bbf641c2287883d3b801f72d634e334", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "46957a3c3e1fd1b31ce3ba91dfd3562d5bbf641c2287883d3b801f72d634e334", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "46957a3c3e1fd1b31ce3ba91dfd3562d5bbf641c2287883d3b801f72d634e334", kill_on_drop: false }` [INFO] [stdout] 46957a3c3e1fd1b31ce3ba91dfd3562d5bbf641c2287883d3b801f72d634e334 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ae730d97ef56456cafadbafa4492d02486f1cb5038f30fe1f042d2ab16d0c74d [INFO] running `Command { std: "docker" "start" "-a" "ae730d97ef56456cafadbafa4492d02486f1cb5038f30fe1f042d2ab16d0c74d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking clap_builder v4.5.37 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-eeeaaaa7b257f0af/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' (376) panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x606cfb03d7c2 - std::backtrace_rs::backtrace::libunwind::trace::h105f921882c12e03 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x606cfb03d7c2 - std::backtrace_rs::backtrace::trace_unsynchronized::hc8b40918ba88bae2 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x606cfb03d7c2 - std::sys::backtrace::_print_fmt::h61144b3593b669a6 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x606cfb03d7c2 - ::fmt::ha7f14f4d725d0e1f [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x606cfb05cd7f - core::fmt::rt::Argument::fmt::h291cffbfb6f5f437 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x606cfb05cd7f - core::fmt::write::h613c8eb2432c6a8e [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x606cfb02f673 - std::io::default_write_fmt::h1b19b0ce9c092acc [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x606cfb02f673 - std::io::Write::write_fmt::ha60efb35d66e9b8c [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x606cfb03da92 - std::sys::backtrace::BacktraceLock::print::hb1963680433203b9 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x606cfb02ce8c - std::panicking::default_hook::{{closure}}::h12644fad1f9f9c3f [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x606cfb02ccc6 - std::panicking::default_hook::h92d7423bfb093343 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x606cfb02c84c - std::panicking::panic_with_hook::hfd863520fce8e281 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x606cfb03db16 - std::panicking::panic_handler::{{closure}}::h75bad88e9628e7c4 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x606cfb03daa9 - std::sys::backtrace::__rust_end_short_backtrace::hba2ee9743eb3598b [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x606cfb02c7ad - __rustc[d20f6e1e05d5ea87]::rust_begin_unwind [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x606cfb05ee40 - core::panicking::panic_fmt::h291b19446b355b1a [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x606cfaffad5b - build_script_build::main::h76bfc6d5221d6dd4 [INFO] [stderr] 17: 0x606cfaff9f13 - core::ops::function::FnOnce::call_once::h9c438f67c9d01f3c [INFO] [stderr] 18: 0x606cfaffa7a6 - std::sys::backtrace::__rust_begin_short_backtrace::hf9cd1b33200f1258 [INFO] [stderr] 19: 0x606cfaffa479 - std::rt::lang_start::{{closure}}::hebe306d65947f2f1 [INFO] [stderr] 20: 0x606cfb03e2f0 - core::ops::function::impls:: for &F>::call_once::hd30f70589ce52217 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x606cfb03e2f0 - std::panicking::catch_unwind::do_call::h229a800b64964a72 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x606cfb03e2f0 - std::panicking::catch_unwind::hf5b1c782bbaa8c87 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x606cfb03e2f0 - std::panic::catch_unwind::h44fb21a21f79e7af [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x606cfb03e2f0 - std::rt::lang_start_internal::{{closure}}::h3d19e32b9588f707 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x606cfb03e2f0 - std::panicking::catch_unwind::do_call::hf0c858106eb39fbd [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x606cfb03e2f0 - std::panicking::catch_unwind::h92692cc8e925ec21 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x606cfb03e2f0 - std::panic::catch_unwind::h4f023f48f37702a5 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x606cfb03e2f0 - std::rt::lang_start_internal::h80fdaffb9834036d [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x606cfaffa461 - std::rt::lang_start::hfab9843661703c7b [INFO] [stderr] 30: 0x606cfaffd145 - main [INFO] [stderr] 31: 0x75d6db9f41ca - [INFO] [stderr] 32: 0x75d6db9f428b - __libc_start_main [INFO] [stderr] 33: 0x606cfaff8fe5 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "ae730d97ef56456cafadbafa4492d02486f1cb5038f30fe1f042d2ab16d0c74d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ae730d97ef56456cafadbafa4492d02486f1cb5038f30fe1f042d2ab16d0c74d", kill_on_drop: false }` [INFO] [stdout] ae730d97ef56456cafadbafa4492d02486f1cb5038f30fe1f042d2ab16d0c74d