[INFO] fetching crate hme_toolbox 0.1.0...
[INFO] checking hme_toolbox-0.1.0 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1
[INFO] extracting crate hme_toolbox 0.1.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate hme_toolbox 0.1.0
[INFO] removed 0 missing examples
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate hme_toolbox 0.1.0
[INFO] tweaked toml for crates.io crate hme_toolbox 0.1.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate hme_toolbox 0.1.0 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hme_toolbox 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 43e6127863c1cf7a9ae9a6cb7a861a2d0b0d493a52072dd0ede3008b441a1266
[INFO] running `Command { std: "docker" "start" "-a" "43e6127863c1cf7a9ae9a6cb7a861a2d0b0d493a52072dd0ede3008b441a1266", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "43e6127863c1cf7a9ae9a6cb7a861a2d0b0d493a52072dd0ede3008b441a1266", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43e6127863c1cf7a9ae9a6cb7a861a2d0b0d493a52072dd0ede3008b441a1266", kill_on_drop: false }`
[INFO] [stdout] 43e6127863c1cf7a9ae9a6cb7a861a2d0b0d493a52072dd0ede3008b441a1266
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ae72017c2797863cdc5c6a05aee3b4b2f280bc3fd4f347001049418b7af9ab51
[INFO] running `Command { std: "docker" "start" "-a" "ae72017c2797863cdc5c6a05aee3b4b2f280bc3fd4f347001049418b7af9ab51", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling serde v1.0.216
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]    Compiling semver v1.0.24
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]     Checking bytemuck v1.21.0
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]    Compiling cc v1.2.6
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking miniz_oxide v0.8.2
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking itoa v1.0.14
[INFO] [stderr]     Checking fdeflate v0.3.7
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking libloading v0.8.6
[INFO] [stderr]    Compiling serde_json v1.0.134
[INFO] [stderr]     Checking color_quant v1.1.0
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking option-ext v0.2.0
[INFO] [stderr]    Compiling rustversion v1.0.19
[INFO] [stderr]     Checking regex-syntax v0.8.5
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking flate2 v1.0.35
[INFO] [stderr]     Checking dlib v0.5.2
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking jpeg-decoder v0.3.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling pathfinder_simd v0.5.4
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]    Compiling yeslogic-fontconfig-sys v6.0.0
[INFO] [stderr]    Compiling font-kit v0.14.2
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking weezl v0.1.8
[INFO] [stderr]     Checking once_cell v1.20.2
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]    Compiling syn v2.0.92
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking gif v0.12.0
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling freetype-sys v0.20.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling anyhow v1.0.95
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking dirs-sys v0.4.1
[INFO] [stderr]     Checking dirs v5.0.1
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]     Checking float-ord v0.3.2
[INFO] [stderr]     Checking iana-time-zone v0.1.61
[INFO] [stderr]     Checking pathfinder_geometry v0.5.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking unicode-width v0.1.14
[INFO] [stderr]     Checking bitflags v2.6.0
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking wide v0.7.30
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking image v0.24.9
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking half v1.8.3
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]    Compiling bio v0.38.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking ttf-parser v0.20.0
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.21.0
[INFO] [stderr]     Checking oorandom v11.1.4
[INFO] [stderr]     Checking criterion-plot v0.4.5
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking plotters-bitmap v0.3.7
[INFO] [stderr]     Checking simba v0.9.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]    Compiling serde_derive v1.0.216
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling getset v0.1.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.21.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking serde_cbor v0.11.2
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking fasta v0.1.3
[INFO] [stderr]     Checking criterion v0.3.6
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking hme_toolbox v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> tests/fasta_test.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufReader` and `self`
[INFO] [stdout]  --> tests/fasta_test.rs:3:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io::{self, BufReader}; // Ensure you have plotters dependency
[INFO] [stdout]   |               ^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hme_toolbox::clustering::hme::HMECluster`
[INFO] [stdout]  --> tests/fasta_test.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hme_toolbox::clustering::hme::HMECluster;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hme_toolbox::plotter::plot_clusters as imported_plot_clusters`
[INFO] [stdout]   --> tests/fasta_test.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use hme_toolbox::plotter::plot_clusters as imported_plot_clusters;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 56.23s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "ae72017c2797863cdc5c6a05aee3b4b2f280bc3fd4f347001049418b7af9ab51", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae72017c2797863cdc5c6a05aee3b4b2f280bc3fd4f347001049418b7af9ab51", kill_on_drop: false }`
[INFO] [stdout] ae72017c2797863cdc5c6a05aee3b4b2f280bc3fd4f347001049418b7af9ab51