[INFO] fetching crate deepbiop-cli 0.1.15...
[INFO] checking deepbiop-cli-0.1.15 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1
[INFO] extracting crate deepbiop-cli 0.1.15 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.15
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.15
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.15 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.15 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.15 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 37a4d9c03139a9fe31545f7f95bdcff486fba99f843da22b7a238e6ef29bc60d
[INFO] running `Command { std: "docker" "start" "-a" "37a4d9c03139a9fe31545f7f95bdcff486fba99f843da22b7a238e6ef29bc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "37a4d9c03139a9fe31545f7f95bdcff486fba99f843da22b7a238e6ef29bc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "37a4d9c03139a9fe31545f7f95bdcff486fba99f843da22b7a238e6ef29bc60d", kill_on_drop: false }`
[INFO] [stdout] 37a4d9c03139a9fe31545f7f95bdcff486fba99f843da22b7a238e6ef29bc60d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 738a13726c711e931fe72fe7b29f4d55816d69426014a0bae50484d7e179ecd4
[INFO] running `Command { std: "docker" "start" "-a" "738a13726c711e931fe72fe7b29f4d55816d69426014a0bae50484d7e179ecd4", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]     Checking once_cell v1.20.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking bytes v1.9.0
[INFO] [stderr]    Compiling serde v1.0.217
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]     Checking regex-syntax v0.8.5
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking lexical-util v1.0.6
[INFO] [stderr]     Checking iana-time-zone v0.1.61
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]     Checking arrow-schema v54.0.0
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]     Checking indexmap v2.7.1
[INFO] [stderr]     Checking miniz_oxide v0.8.3
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling semver v1.0.25
[INFO] [stderr]    Compiling seq-macro v0.3.5
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]     Checking itoa v1.0.14
[INFO] [stderr]     Checking raw-cpuid v10.7.0
[INFO] [stderr]    Compiling pyo3-build-config v0.23.4
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling serde_json v1.0.137
[INFO] [stderr]     Checking bitflags v2.8.0
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking lexical-write-integer v1.0.5
[INFO] [stderr]     Checking lexical-parse-integer v1.0.5
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling cc v1.2.10
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]     Checking lexical-write-float v1.0.5
[INFO] [stderr]     Checking lexical-parse-float v1.0.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]     Checking log v0.4.25
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling flatbuffers v24.12.23
[INFO] [stderr]    Compiling toml_datetime v0.6.8
[INFO] [stderr]    Compiling winnow v0.6.24
[INFO] [stderr]     Checking base64 v0.22.1
[INFO] [stderr]     Checking lexical-core v1.0.5
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]    Compiling anyhow v1.0.95
[INFO] [stderr]     Checking alloc-no-stdlib v2.0.4
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking anstyle-parse v0.2.6
[INFO] [stderr]     Checking alloc-stdlib v0.2.2
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]     Checking anstyle-query v1.1.2
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking colorchoice v1.0.3
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]     Checking brotli-decompressor v4.0.2
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking anstream v0.6.18
[INFO] [stderr]     Checking twox-hash v1.6.3
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking rustc-hash v2.1.0
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]     Checking lz4_flex v0.11.3
[INFO] [stderr]    Compiling libz-ng-sys v1.1.21
[INFO] [stderr]    Compiling zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.11
[INFO] [stderr]    Compiling pyo3-ffi v0.23.4
[INFO] [stderr]    Compiling pyo3-macros-backend v0.23.4
[INFO] [stderr]    Compiling pyo3 v0.23.4
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]     Checking linux-raw-sys v0.4.15
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking inventory v0.3.17
[INFO] [stderr]     Checking memmap2 v0.9.5
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]     Checking lexical v7.0.4
[INFO] [stderr]     Checking brotli v7.0.0
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking fastrand v2.3.0
[INFO] [stderr]    Compiling toml_edit v0.22.22
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking unicode-width v0.1.14
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]    Compiling object v0.36.7
[INFO] [stderr]     Checking clap_builder v4.5.27
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]     Checking gimli v0.31.1
[INFO] [stderr]    Compiling nix v0.29.0
[INFO] [stderr]     Checking rustc-demangle v0.1.24
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking bstr v1.11.3
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]     Checking uuid v1.12.1
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-fastq v0.16.0
[INFO] [stderr]     Checking env_filter v0.1.3
[INFO] [stderr]     Checking tempfile v3.15.0
[INFO] [stderr]     Checking env_logger v0.11.6
[INFO] [stderr]     Checking ctrlc v3.4.5
[INFO] [stderr]    Compiling darling_core v0.20.10
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]     Checking addr2line v0.24.2
[INFO] [stderr]    Compiling proc-macro-crate v3.2.0
[INFO] [stderr]    Compiling bytemuck_derive v1.8.1
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.217
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerofrom-derive v0.1.5
[INFO] [stderr]    Compiling pyo3-stub-gen-derive v0.6.2
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling num_enum_derive v0.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]     Checking bytemuck v1.21.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.10.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]     Checking liblzma v0.3.5
[INFO] [stderr]    Compiling clap_derive v4.5.24
[INFO] [stderr]     Checking backtrace v0.3.74
[INFO] [stderr]     Checking zerofrom v0.1.5
[INFO] [stderr]    Compiling darling_macro v0.20.10
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking pulp v0.18.22
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking num_enum v0.7.3
[INFO] [stderr]    Compiling darling v0.20.10
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]    Compiling pyo3-macros v0.23.4
[INFO] [stderr]     Checking clap v4.5.27
[INFO] [stderr]     Checking zstd v0.13.2
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]     Checking clap-markdown v0.1.4
[INFO] [stderr]     Checking clap-verbosity-flag v3.0.2
[INFO] [stderr]     Checking clap_complete v4.5.42
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking half v2.4.1
[INFO] [stderr]     Checking arrow-buffer v54.0.0
[INFO] [stderr]     Checking gemm-common v0.17.1
[INFO] [stderr]     Checking gemm-f32 v0.17.1
[INFO] [stderr]     Checking gemm-f64 v0.17.1
[INFO] [stderr]     Checking gemm-c32 v0.17.1
[INFO] [stderr]     Checking gemm-c64 v0.17.1
[INFO] [stderr]     Checking arrow-data v54.0.0
[INFO] [stderr]     Checking gemm-f16 v0.17.1
[INFO] [stderr]     Checking arrow-array v54.0.0
[INFO] [stderr]     Checking gemm v0.17.1
[INFO] [stderr]     Checking serde_spanned v0.6.8
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking os_info v3.9.2
[INFO] [stderr]     Checking flate2 v1.0.35
[INFO] [stderr]     Checking noodles-bgzf v0.34.0
[INFO] [stderr]     Checking needletail v0.6.1
[INFO] [stderr]     Checking arrow-select v54.0.0
[INFO] [stderr]     Checking arrow-ipc v54.0.0
[INFO] [stderr]     Checking arrow-row v54.0.0
[INFO] [stderr]     Checking arrow-arith v54.0.0
[INFO] [stderr]     Checking noodles-csi v0.41.0
[INFO] [stderr]     Checking noodles-fasta v0.46.0
[INFO] [stderr]     Checking noodles-sam v0.68.0
[INFO] [stderr]     Checking safetensors v0.4.5
[INFO] [stderr]     Checking ug v0.0.2
[INFO] [stderr]     Checking arrow-cast v54.0.0
[INFO] [stderr]     Checking arrow-string v54.0.0
[INFO] [stderr]     Checking arrow-ord v54.0.0
[INFO] [stderr]     Checking toml v0.8.19
[INFO] [stderr]     Checking candle-core v0.8.2
[INFO] [stderr]     Checking human-panic v2.0.2
[INFO] [stderr]     Checking noodles-bam v0.72.0
[INFO] [stderr]     Checking arrow-csv v54.0.0
[INFO] [stderr]     Checking arrow-json v54.0.0
[INFO] [stderr]     Checking parquet v54.0.0
[INFO] [stderr]     Checking noodles v0.87.0
[INFO] [stderr]     Checking arrow v54.0.0
[INFO] [stderr]     Checking numpy v0.23.0
[INFO] [stderr]     Checking pyo3-stub-gen v0.6.2
[INFO] [stderr]     Checking deepbiop-utils v0.1.15
[INFO] [stderr]     Checking deepbiop-core v0.1.15
[INFO] [stderr]     Checking deepbiop-fq v0.1.15
[INFO] [stderr]     Checking deepbiop-fa v0.1.15
[INFO] [stderr]     Checking deepbiop-bam v0.1.15
[INFO] [stderr]     Checking deepbiop-cli v0.1.15 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.84s
[INFO] running `Command { std: "docker" "inspect" "738a13726c711e931fe72fe7b29f4d55816d69426014a0bae50484d7e179ecd4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "738a13726c711e931fe72fe7b29f4d55816d69426014a0bae50484d7e179ecd4", kill_on_drop: false }`
[INFO] [stdout] 738a13726c711e931fe72fe7b29f4d55816d69426014a0bae50484d7e179ecd4