[INFO] fetching crate cytos 1.2.1... [INFO] checking cytos-1.2.1 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] extracting crate cytos 1.2.1 into /workspace/builds/worker-6-tc2/source [INFO] started tweaking crates.io crate cytos 1.2.1 [INFO] finished tweaking crates.io crate cytos 1.2.1 [INFO] tweaked toml for crates.io crate cytos 1.2.1 written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate cytos 1.2.1 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate cytos 1.2.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 702e09078cdb096fc194a51a5731c3729820e1b36d4ab2ed92ef45995a825771 [INFO] running `Command { std: "docker" "start" "-a" "702e09078cdb096fc194a51a5731c3729820e1b36d4ab2ed92ef45995a825771", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "702e09078cdb096fc194a51a5731c3729820e1b36d4ab2ed92ef45995a825771", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "702e09078cdb096fc194a51a5731c3729820e1b36d4ab2ed92ef45995a825771", kill_on_drop: false }` [INFO] [stdout] 702e09078cdb096fc194a51a5731c3729820e1b36d4ab2ed92ef45995a825771 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 05ff9acf596bec3977a846c5466e3819f05bbd6b2286b012fc47ab2fce6356c1 [INFO] running `Command { std: "docker" "start" "-a" "05ff9acf596bec3977a846c5466e3819f05bbd6b2286b012fc47ab2fce6356c1", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling libc v0.2.150 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking memchr v2.6.4 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling serde v1.0.192 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Checking bytemuck v1.14.0 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking regex-syntax v0.8.2 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Checking getrandom v0.2.11 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling syn v2.0.39 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking wide v0.7.13 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking num-complex v0.4.4 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking utf8parse v0.2.1 [INFO] [stderr] Compiling thiserror v1.0.50 [INFO] [stderr] Compiling rustix v0.38.24 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking anstyle-parse v0.2.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking anstyle v1.0.4 [INFO] [stderr] Checking hashbrown v0.14.2 [INFO] [stderr] Checking colorchoice v1.0.0 [INFO] [stderr] Checking anstyle-query v1.0.0 [INFO] [stderr] Compiling anyhow v1.0.75 [INFO] [stderr] Checking regex-automata v0.4.3 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking bitflags v2.4.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Checking linux-raw-sys v0.4.11 [INFO] [stderr] Checking anstream v0.6.4 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking either v1.9.0 [INFO] [stderr] Checking indexmap v2.1.0 [INFO] [stderr] Checking clap_lex v0.6.0 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking itoa v1.0.9 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking ryu v1.0.15 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking clap_builder v4.4.8 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking is-terminal v0.4.9 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking regex v1.10.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking iana-time-zone v0.1.58 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking log v0.4.20 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking termcolor v1.4.0 [INFO] [stderr] Checking bytecount v0.6.7 [INFO] [stderr] Checking chrono v0.4.31 [INFO] [stderr] Checking env_logger v0.10.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling serde_derive v1.0.192 [INFO] [stderr] Compiling thiserror-impl v1.0.50 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Compiling clap_derive v4.4.7 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking clap v4.4.8 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.4.0 [INFO] [stderr] Checking cytos v1.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/cli/msa/concat.rs:25:28 [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult> { [INFO] [stdout] | ^^^^^^^^^^^^^ -------- --------- the same lifetime is hidden here [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/model/fasta/fasta_file.rs:17:24 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult { [INFO] [stdout] | ^^ the lifetime is named here --------- the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/cli/msa/concat.rs:25:28 [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult> { [INFO] [stdout] | ^^^^^^^^^^^^^ -------- --------- the same lifetime is hidden here [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/model/fasta/fasta_file.rs:17:24 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult { [INFO] [stdout] | ^^ the lifetime is named here --------- the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 13s [INFO] running `Command { std: "docker" "inspect" "05ff9acf596bec3977a846c5466e3819f05bbd6b2286b012fc47ab2fce6356c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "05ff9acf596bec3977a846c5466e3819f05bbd6b2286b012fc47ab2fce6356c1", kill_on_drop: false }` [INFO] [stdout] 05ff9acf596bec3977a846c5466e3819f05bbd6b2286b012fc47ab2fce6356c1