[INFO] fetching crate cheminee 0.1.52... [INFO] checking cheminee-0.1.52 against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] extracting crate cheminee 0.1.52 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate cheminee 0.1.52 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate cheminee 0.1.52 [INFO] tweaked toml for crates.io crate cheminee 0.1.52 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate cheminee 0.1.52 on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate cheminee 0.1.52 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bbafb8ea79677cb55482b5edea12a5941e85eafe08933b051ea236fb3defcd5b [INFO] running `Command { std: "docker" "start" "-a" "bbafb8ea79677cb55482b5edea12a5941e85eafe08933b051ea236fb3defcd5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bbafb8ea79677cb55482b5edea12a5941e85eafe08933b051ea236fb3defcd5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bbafb8ea79677cb55482b5edea12a5941e85eafe08933b051ea236fb3defcd5b", kill_on_drop: false }` [INFO] [stdout] bbafb8ea79677cb55482b5edea12a5941e85eafe08933b051ea236fb3defcd5b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dbda046dfb31e3da25f63cd779e439cf1db5b414cb4eda57b697e194c4a87460 [INFO] running `Command { std: "docker" "start" "-a" "dbda046dfb31e3da25f63cd779e439cf1db5b414cb4eda57b697e194c4a87460", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling libc v0.2.168 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking itoa v1.0.14 [INFO] [stderr] Checking pin-project-lite v0.2.15 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking once_cell v1.20.2 [INFO] [stderr] Checking futures-core v0.3.31 [INFO] [stderr] Compiling serde v1.0.215 [INFO] [stderr] Checking bytes v1.9.0 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Checking foldhash v0.1.3 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking futures-io v0.3.31 [INFO] [stderr] Compiling httparse v1.9.5 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking futures-channel v0.3.31 [INFO] [stderr] Checking futures-task v0.3.31 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling num-conv v0.1.0 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling rustix v0.38.42 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling openssl v0.10.68 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.90 [INFO] [stderr] Checking subtle v2.6.1 [INFO] [stderr] Checking log v0.4.22 [INFO] [stderr] Checking tracing-core v0.1.33 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling native-tls v0.2.12 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling socket2 v0.5.8 [INFO] [stderr] Compiling indexmap v2.7.0 [INFO] [stderr] Compiling openssl-probe v0.1.5 [INFO] [stderr] Compiling cc v1.2.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling litemap v0.7.4 [INFO] [stderr] Compiling mio v1.0.3 [INFO] [stderr] Compiling http v1.2.0 [INFO] [stderr] Compiling crypto-common v0.1.6 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling cpufeatures v0.2.16 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking signal-hook-registry v1.4.2 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling time-macros v0.2.19 [INFO] [stderr] Compiling tokio v1.42.0 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling icu_properties_data v1.5.0 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling foreign-types-shared v0.1.1 [INFO] [stderr] Compiling zstd-safe v5.0.2+zstd.1.5.2 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling foreign-types v0.3.2 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling http-body v1.0.1 [INFO] [stderr] Compiling inout v0.1.3 [INFO] [stderr] Compiling filetime v0.2.25 [INFO] [stderr] Checking http v0.2.12 [INFO] [stderr] Compiling protobuf v2.27.1 [INFO] [stderr] Compiling toml_datetime v0.6.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling winnow v0.5.40 [INFO] [stderr] Compiling base64ct v1.6.0 [INFO] [stderr] Compiling write16 v1.0.0 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling openssl-sys v0.9.104 [INFO] [stderr] Compiling zstd-sys v2.0.9+zstd.1.5.5 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.78+curl-8.11.0 [INFO] [stderr] Compiling xattr v1.3.1 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Compiling try-lock v0.2.5 [INFO] [stderr] Compiling atomic-waker v1.1.2 [INFO] [stderr] Compiling icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling utf16_iter v1.0.5 [INFO] [stderr] Checking want v0.3.1 [INFO] [stderr] Compiling deranged v0.3.11 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling tar v0.4.43 [INFO] [stderr] Compiling password-hash v0.4.2 [INFO] [stderr] Compiling link-cplusplus v1.0.9 [INFO] [stderr] Compiling cipher v0.4.4 [INFO] [stderr] Compiling hmac v0.12.1 [INFO] [stderr] Compiling sha2 v0.10.8 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling scratch v1.0.7 [INFO] [stderr] Compiling crunchy v0.2.2 [INFO] [stderr] Compiling curl v0.4.47 [INFO] [stderr] Compiling pin-project-internal v0.4.30 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Compiling aes v0.8.4 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling pbkdf2 v0.11.0 [INFO] [stderr] Compiling time v0.3.37 [INFO] [stderr] Checking universal-hash v0.5.1 [INFO] [stderr] Compiling sha1 v0.10.6 [INFO] [stderr] Compiling cxxbridge-flags v1.0.133 [INFO] [stderr] Compiling tower-service v0.3.3 [INFO] [stderr] Compiling mime 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Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.215 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling tokio-macros v2.4.0 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling async-trait v0.1.83 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling hyper v1.5.1 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Checking opentelemetry v0.21.0 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking pin-project v0.4.30 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Checking httpdate v1.0.3 [INFO] [stderr] Checking bytes v0.5.6 [INFO] [stderr] Checking base64 v0.21.7 [INFO] [stderr] Checking utf8-ranges v1.0.5 [INFO] [stderr] Checking glob v0.3.1 [INFO] [stderr] Compiling base64 v0.22.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling ipnet v2.10.1 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Checking tantivy-fst v0.5.0 [INFO] [stderr] Compiling rdkit-sys v0.4.12 [INFO] [stderr] Compiling darling_macro v0.14.4 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling hyper-util v0.1.10 [INFO] [stderr] Compiling proc-macro-crate v2.0.2 [INFO] [stderr] Compiling cxxbridge-macro v1.0.133 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking futures-executor v0.3.31 [INFO] [stderr] Checking futures v0.3.31 [INFO] [stderr] Checking opentelemetry_sdk v0.21.2 [INFO] [stderr] Checking futures_codec v0.4.1 [INFO] [stderr] Checking aes-gcm v0.10.3 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking hkdf v0.12.4 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking tantivy-bitpacker v0.6.0 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Checking headers-core v0.2.0 [INFO] [stderr] Checking http-body v0.4.6 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Checking iana-time-zone v0.1.61 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking unsafe-libyaml v0.2.11 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Checking minimal-lexical v0.2.1 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Checking crc-catalog v2.4.0 [INFO] [stderr] Checking regex-syntax v0.6.29 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking murmurhash32 v0.3.1 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Compiling tokio-native-tls v0.3.1 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Compiling hyper-tls v0.6.0 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Checking crc v3.2.1 [INFO] [stderr] Checking chrono v0.4.39 [INFO] [stderr] Checking wyz v0.5.1 [INFO] [stderr] Checking opentelemetry-prometheus v0.14.1 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking headers v0.3.9 [INFO] [stderr] Checking rfc7239 v0.1.2 [INFO] [stderr] Compiling poem-derive v1.3.59 [INFO] [stderr] Checking sse-codec v0.3.2 [INFO] [stderr] Compiling darling v0.14.4 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Compiling tensorflow-internal-macros v0.0.3 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking nix v0.27.1 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking half v2.4.1 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking instant v0.1.13 [INFO] [stderr] Checking overload v0.1.1 [INFO] [stderr] Checking indenter v0.3.3 [INFO] [stderr] Checking quick-xml v0.30.0 [INFO] [stderr] Checking serde_yaml v0.9.34+deprecated [INFO] [stderr] Checking downcast-rs v1.2.1 [INFO] [stderr] Checking fastdivide v0.4.2 [INFO] [stderr] Compiling convert_case v0.4.0 [INFO] [stderr] Checking tokio-stream v0.1.17 [INFO] [stderr] Checking h2 v0.3.26 [INFO] [stderr] Compiling proc-macro-crate v1.3.1 [INFO] [stderr] Checking wildmatch v2.4.0 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking tantivy-query-grammar v0.22.0 [INFO] [stderr] Compiling derive_more v0.99.18 [INFO] [stderr] Checking clap_builder v4.5.23 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking nu-ansi-term v0.46.0 [INFO] [stderr] Checking bitvec v1.0.1 [INFO] [stderr] Checking uuid v1.11.0 [INFO] [stderr] Checking tantivy-tokenizer-api v0.3.0 [INFO] [stderr] Checking quick-xml v0.26.0 [INFO] [stderr] Checking sketches-ddsketch v0.2.2 [INFO] [stderr] Checking rust-stemmers v1.2.0 [INFO] [stderr] Checking measure_time v0.8.3 [INFO] [stderr] Checking matchers v0.1.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling poem-openapi-derive v2.0.27 [INFO] [stderr] Checking fs4 v0.8.4 [INFO] [stderr] Checking tantivy-common v0.7.0 [INFO] [stderr] Checking crossbeam-channel v0.5.13 [INFO] [stderr] warning: rdkit-sys@0.4.12: In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_standardize.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-mol_standardize.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_standardize.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/descriptors.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-descriptors.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/descriptors.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-fingerprint.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/ro_mol.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-ro_mol.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/ro_mol.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_ops.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/mol_ops.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-mol_ops.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_ops.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/scaffold_network.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-scaffold_network.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-rw_mol.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/substruct_match.rs.cc:1: [INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-substruct_match.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/substruct_match.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/periodic_table.cc:2:10: fatal error: rdkit/GraphMol/PeriodicTable.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-periodic_table.o" "-c" "wrapper/src/periodic_table.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/mol_standardize.cc:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 4 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-mol_standardize.o" "-c" "wrapper/src/mol_standardize.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/descriptors.cc:2:10: fatal error: GraphMol/Descriptors/Property.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-descriptors.o" "-c" "wrapper/src/descriptors.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/fingerprint.cc:2:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-fingerprint.o" "-c" "wrapper/src/fingerprint.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/ro_mol.cc:2:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-ro_mol.o" "-c" "wrapper/src/ro_mol.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/mol_ops.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-mol_ops.o" "-c" "wrapper/src/mol_ops.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/scaffold_network.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-scaffold_network.o" "-c" "wrapper/src/scaffold_network.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/rw_mol.cc:2:10: fatal error: GraphMol/FileParsers/FileParsers.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-rw_mol.o" "-c" "wrapper/src/rw_mol.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/substruct_match.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdkit-sys@0.4.12: 2 | #include [INFO] [stderr] warning: rdkit-sys@0.4.12: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated. [INFO] [stderr] warning: rdkit-sys@0.4.12: ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-substruct_match.o" "-c" "wrapper/src/substruct_match.cc" with args c++ did not execute successfully (status code exit status: 1). [INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.4.12` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-6821941e8d1c2f5d/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/periodic_table.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/periodic_table.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/mol_standardize.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/mol_standardize.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/descriptors.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/descriptors.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/fingerprint.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/fingerprint.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/ro_mol.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/ro_mol.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/mol_ops.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/mol_ops.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/scaffold_network.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/scaffold_network.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/rw_mol.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/rw_mol.h [INFO] [stderr] cargo:rerun-if-changed=wrapper/src/substruct_match.cc [INFO] [stderr] cargo:rerun-if-changed=wrapper/include/substruct_match.h [INFO] [stderr] cargo:CXXBRIDGE_PREFIX=rdkit-sys [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_standardize.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-mol_standardize.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_standardize.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/descriptors.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-descriptors.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/descriptors.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-fingerprint.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/ro_mol.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-ro_mol.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/ro_mol.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_ops.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/mol_ops.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-mol_ops.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/mol_ops.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/scaffold_network.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-scaffold_network.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-rw_mol.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/rw_mol.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/substruct_match.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12/wrapper/include/ro_mol.h:4:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/516ff958617d9e25-substruct_match.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/sources/rdkit-sys/src/bridge/substruct_match.rs.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/periodic_table.cc:2:10: fatal error: rdkit/GraphMol/PeriodicTable.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-periodic_table.o" "-c" "wrapper/src/periodic_table.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/mol_standardize.cc:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-mol_standardize.o" "-c" "wrapper/src/mol_standardize.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/descriptors.cc:2:10: fatal error: GraphMol/Descriptors/Property.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-descriptors.o" "-c" "wrapper/src/descriptors.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/fingerprint.cc:2:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-fingerprint.o" "-c" "wrapper/src/fingerprint.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/ro_mol.cc:2:10: fatal error: DataStructs/ExplicitBitVect.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-ro_mol.o" "-c" "wrapper/src/ro_mol.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/mol_ops.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-mol_ops.o" "-c" "wrapper/src/mol_ops.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/scaffold_network.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-scaffold_network.o" "-c" "wrapper/src/scaffold_network.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/rw_mol.cc:2:10: fatal error: GraphMol/FileParsers/FileParsers.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-rw_mol.o" "-c" "wrapper/src/rw_mol.cc" with args c++ did not execute successfully (status code exit status: 1).cargo:warning=wrapper/src/substruct_match.cc:2:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 2 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] exit status: 1 [INFO] [stderr] cargo:warning=ToolExecError: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-substruct_match.o" "-c" "wrapper/src/substruct_match.cc" with args c++ did not execute successfully (status code exit status: 1). [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: Command LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rdkit-sys-0.4.12" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-e9fb28cfb8a7d5cd/out/743184b52ecb2d74-substruct_match.o" "-c" "wrapper/src/substruct_match.cc" with args c++ did not execute successfully (status code exit status: 1). [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "dbda046dfb31e3da25f63cd779e439cf1db5b414cb4eda57b697e194c4a87460", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dbda046dfb31e3da25f63cd779e439cf1db5b414cb4eda57b697e194c4a87460", kill_on_drop: false }` [INFO] [stdout] dbda046dfb31e3da25f63cd779e439cf1db5b414cb4eda57b697e194c4a87460