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[INFO] [stdout] warning: use of deprecated function `sassy::test_cpu_features`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/main.rs:29:20 [INFO] [stdout] | [INFO] [stdout] 29 | sassy::test_cpu_features(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `sassy::test_throughput`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/main.rs:30:20 [INFO] [stdout] | [INFO] [stdout] 30 | sassy::test_throughput(); [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:19 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:29 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:3:22 [INFO] [stdout] | [INFO] [stdout] 3 | input_iterator::{InputIterator, PatternRecord}, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:3:37 [INFO] [stdout] | [INFO] [stdout] 3 | input_iterator::{InputIterator, PatternRecord}, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:4:16 [INFO] [stdout] | [INFO] [stdout] 4 | profiles::{Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:4:23 [INFO] [stdout] | [INFO] [stdout] 4 | profiles::{Iupac, Profile}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:141:24 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn matching_seq(seq1: &[u8], seq2: &[u8]) -> bool { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:170:21 [INFO] [stdout] | [INFO] [stdout] 170 | let pam_compl = Iupac::complement(pam); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:182:25 [INFO] [stdout] | [INFO] [stdout] 182 | .map(|(i, seq)| PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:179:22 [INFO] [stdout] | [INFO] [stdout] 179 | let queries: Vec = guide_sequences [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:189:21 [INFO] [stdout] | [INFO] [stdout] 189 | let task_iter = InputIterator::new(&args.path, &queries, None, true); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:36 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:47 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:198:76 [INFO] [stdout] | [INFO] [stdout] 198 | let filter_fn = |_q: &[u8], text_up_to_end: &[u8], strand: Strand| { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:200:42 [INFO] [stdout] | [INFO] [stdout] 200 | if strand == Strand::Fwd { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:201:40 [INFO] [stdout] | [INFO] [stdout] 201 | matching_seq::(pam_slice, pam) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:203:40 [INFO] [stdout] | [INFO] [stdout] 203 | matching_seq::(pam_slice, pam_compl) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:244:71 [INFO] [stdout] | [INFO] [stdout] 244 | ... let match_region = if m.strand == Strand::Rc { [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:245:43 [INFO] [stdout] | [INFO] [stdout] 245 | ... let rc = ::reverse_complement(slice); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:245:62 [INFO] [stdout] | [INFO] [stdout] 245 | ... let rc = ::reverse_complement(slice); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:253:41 [INFO] [stdout] | [INFO] [stdout] 253 | ... Strand::Fwd => "+", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:254:41 [INFO] [stdout] | [INFO] [stdout] 254 | ... Strand::Rc => "-", [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::CachedRev`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::CachedRev; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:3:29 [INFO] [stdout] | [INFO] [stdout] 3 | use sassy::input_iterator::{InputIterator, PatternRecord}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:3:44 [INFO] [stdout] | [INFO] [stdout] 3 | use sassy::input_iterator::{InputIterator, PatternRecord}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:16 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:28 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:35 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:61:43 [INFO] [stdout] | [INFO] [stdout] 61 | fn get_patterns(args: &SearchArgs) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:64:14 [INFO] [stdout] | [INFO] [stdout] 64 | vec![PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:75:27 [INFO] [stdout] | [INFO] [stdout] 75 | patterns.push(PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | m: &Match, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::CachedRev`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:98:19 [INFO] [stdout] | [INFO] [stdout] 98 | cached_text: &CachedRev>, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:107:44 [INFO] [stdout] | [INFO] [stdout] 107 | let slice_str = if m.strand == Strand::Rc { [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:110:43 [INFO] [stdout] | [INFO] [stdout] 110 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:110:60 [INFO] [stdout] | [INFO] [stdout] 110 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:113:43 [INFO] [stdout] | [INFO] [stdout] 113 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:113:62 [INFO] [stdout] | [INFO] [stdout] 113 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:123:17 [INFO] [stdout] | [INFO] [stdout] 123 | Strand::Fwd => "+", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:124:17 [INFO] [stdout] | [INFO] [stdout] 124 | Strand::Rc => "-", [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:131:11 [INFO] [stdout] | [INFO] [stdout] 131 | Ascii(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:131:20 [INFO] [stdout] | [INFO] [stdout] 131 | Ascii(Searcher), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:132:9 [INFO] [stdout] | [INFO] [stdout] 132 | Dna(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:132:18 [INFO] [stdout] | [INFO] [stdout] 132 | Dna(Searcher), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:133:11 [INFO] [stdout] | [INFO] [stdout] 133 | Iupac(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:133:20 [INFO] [stdout] | [INFO] [stdout] 133 | Iupac(Searcher), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:169:29 [INFO] [stdout] | [INFO] [stdout] 169 | let ref task_iterator = InputIterator::new(&args.path, &patterns, None, rc); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:61 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:72 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:57 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:68 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:61 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:72 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:137:18 [INFO] [stdout] | [INFO] [stdout] 137 | fn search(&mut self, pattern: &[u8], input: &I, k: usize) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:137:87 [INFO] [stdout] | [INFO] [stdout] 137 | fn search(&mut self, pattern: &[u8], input: &I, k: usize) -> Vec { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `sassy::test_cpu_features`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/main.rs:29:20 [INFO] [stdout] | [INFO] [stdout] 29 | sassy::test_cpu_features(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `sassy::test_throughput`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/main.rs:30:20 [INFO] [stdout] | [INFO] [stdout] 30 | sassy::test_throughput(); [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:19 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:2:29 [INFO] [stdout] | [INFO] [stdout] 2 | RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:3:22 [INFO] [stdout] | [INFO] [stdout] 3 | input_iterator::{InputIterator, PatternRecord}, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:3:37 [INFO] [stdout] | [INFO] [stdout] 3 | input_iterator::{InputIterator, PatternRecord}, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:4:16 [INFO] [stdout] | [INFO] [stdout] 4 | profiles::{Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:4:23 [INFO] [stdout] | [INFO] [stdout] 4 | profiles::{Iupac, Profile}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:141:24 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn matching_seq(seq1: &[u8], seq2: &[u8]) -> bool { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:170:21 [INFO] [stdout] | [INFO] [stdout] 170 | let pam_compl = Iupac::complement(pam); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:182:25 [INFO] [stdout] | [INFO] [stdout] 182 | .map(|(i, seq)| PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:179:22 [INFO] [stdout] | [INFO] [stdout] 179 | let queries: Vec = guide_sequences [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:189:21 [INFO] [stdout] | [INFO] [stdout] 189 | let task_iter = InputIterator::new(&args.path, &queries, None, true); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:36 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:47 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:198:76 [INFO] [stdout] | [INFO] [stdout] 198 | let filter_fn = |_q: &[u8], text_up_to_end: &[u8], strand: Strand| { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:200:42 [INFO] [stdout] | [INFO] [stdout] 200 | if strand == Strand::Fwd { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:201:40 [INFO] [stdout] | [INFO] [stdout] 201 | matching_seq::(pam_slice, pam) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:203:40 [INFO] [stdout] | [INFO] [stdout] 203 | matching_seq::(pam_slice, pam_compl) [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:244:71 [INFO] [stdout] | [INFO] [stdout] 244 | ... let match_region = if m.strand == Strand::Rc { [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:245:43 [INFO] [stdout] | [INFO] [stdout] 245 | ... let rc = ::reverse_complement(slice); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:245:62 [INFO] [stdout] | [INFO] [stdout] 245 | ... let rc = ::reverse_complement(slice); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::is_match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:143:16 [INFO] [stdout] | [INFO] [stdout] 143 | if !P::is_match(*c1, *c2) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:253:41 [INFO] [stdout] | [INFO] [stdout] 253 | ... Strand::Fwd => "+", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:254:41 [INFO] [stdout] | [INFO] [stdout] 254 | ... Strand::Rc => "-", [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::CachedRev`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::CachedRev; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:3:29 [INFO] [stdout] | [INFO] [stdout] 3 | use sassy::input_iterator::{InputIterator, PatternRecord}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:3:44 [INFO] [stdout] | [INFO] [stdout] 3 | use sassy::input_iterator::{InputIterator, PatternRecord}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated enum `sassy::Strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | Match, RcSearchAble, Searcher, Strand, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:16 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:28 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:6:35 [INFO] [stdout] | [INFO] [stdout] 6 | profiles::{Ascii, Dna, Iupac, Profile}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:61:43 [INFO] [stdout] | [INFO] [stdout] 61 | fn get_patterns(args: &SearchArgs) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:64:14 [INFO] [stdout] | [INFO] [stdout] 64 | vec![PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::PatternRecord`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:75:27 [INFO] [stdout] | [INFO] [stdout] 75 | patterns.push(PatternRecord { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | m: &Match, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::CachedRev`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:98:19 [INFO] [stdout] | [INFO] [stdout] 98 | cached_text: &CachedRev>, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:107:44 [INFO] [stdout] | [INFO] [stdout] 107 | let slice_str = if m.strand == Strand::Rc { [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:110:43 [INFO] [stdout] | [INFO] [stdout] 110 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:110:60 [INFO] [stdout] | [INFO] [stdout] 110 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:113:43 [INFO] [stdout] | [INFO] [stdout] 113 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::reverse_complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:113:62 [INFO] [stdout] | [INFO] [stdout] 113 | String::from_utf8_lossy(&::reverse_complement(slice)).into_owned() [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:123:17 [INFO] [stdout] | [INFO] [stdout] 123 | Strand::Fwd => "+", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `sassy::Strand::Rc`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:124:17 [INFO] [stdout] | [INFO] [stdout] 124 | Strand::Rc => "-", [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:131:11 [INFO] [stdout] | [INFO] [stdout] 131 | Ascii(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:131:20 [INFO] [stdout] | [INFO] [stdout] 131 | Ascii(Searcher), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:132:9 [INFO] [stdout] | [INFO] [stdout] 132 | Dna(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:132:18 [INFO] [stdout] | [INFO] [stdout] 132 | Dna(Searcher), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:133:11 [INFO] [stdout] | [INFO] [stdout] 133 | Iupac(Searcher), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:133:20 [INFO] [stdout] | [INFO] [stdout] 133 | Iupac(Searcher), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::input_iterator::InputIterator`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:169:29 [INFO] [stdout] | [INFO] [stdout] 169 | let ref task_iterator = InputIterator::new(&args.path, &patterns, None, rc); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:61 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:72 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:57 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:68 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:61 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:72 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::RcSearchAble`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:137:18 [INFO] [stdout] | [INFO] [stdout] 137 | fn search(&mut self, pattern: &[u8], input: &I, k: usize) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:137:87 [INFO] [stdout] | [INFO] [stdout] 137 | fn search(&mut self, pattern: &[u8], input: &I, k: usize) -> Vec { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:170:28 [INFO] [stdout] | [INFO] [stdout] 170 | let pam_compl = Iupac::complement(pam); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:183:13 [INFO] [stdout] | [INFO] [stdout] 183 | id: format!("guide_{}", i + 1), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:184:13 [INFO] [stdout] | [INFO] [stdout] 184 | seq: seq.clone(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::input_iterator::InputIterator::<'a>::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:189:36 [INFO] [stdout] | [INFO] [stdout] 189 | let task_iter = InputIterator::new(&args.path, &queries, None, true); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:55 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::input_iterator::InputIterator::<'a>::next_batch`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:207:51 [INFO] [stdout] | [INFO] [stdout] 207 | while let Some(batch) = task_iter.next_batch() { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:209:47 [INFO] [stdout] | [INFO] [stdout] 209 | let guide_sequence = &item.pattern.seq; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:209:47 [INFO] [stdout] | [INFO] [stdout] 209 | let guide_sequence = &item.pattern.seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:210:40 [INFO] [stdout] | [INFO] [stdout] 210 | let id_text = &item.text; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:212:35 [INFO] [stdout] | [INFO] [stdout] 212 | let id = &id_text.id; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:213:37 [INFO] [stdout] | [INFO] [stdout] 213 | let text = &id_text.seq; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_with_fn`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:216:38 [INFO] [stdout] | [INFO] [stdout] 216 | ... searcher.search_with_fn(guide_sequence, text, args.k, true, filter_fn) [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_all`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:218:38 [INFO] [stdout] | [INFO] [stdout] 218 | ... searcher.search_all(guide_sequence, text, args.k) [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_start`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:226:41 [INFO] [stdout] | [INFO] [stdout] 226 | ... let start = m.text_start; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:227:39 [INFO] [stdout] | [INFO] [stdout] 227 | ... let end = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::RcSearchAble::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:228:45 [INFO] [stdout] | [INFO] [stdout] 228 | ... let text = text.text(); [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:244:51 [INFO] [stdout] | [INFO] [stdout] 244 | ... let match_region = if m.strand == Strand::Rc { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:250:40 [INFO] [stdout] | [INFO] [stdout] 250 | ... let cost = m.cost; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cigar`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:251:41 [INFO] [stdout] | [INFO] [stdout] 251 | ... let cigar = m.cigar.to_string(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:252:48 [INFO] [stdout] | [INFO] [stdout] 252 | ... let strand = match m.strand { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:65:13 [INFO] [stdout] | [INFO] [stdout] 65 | id: "pattern".to_string(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:66:13 [INFO] [stdout] | [INFO] [stdout] 66 | seq: p.as_bytes().to_vec(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | id, [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | seq: seqrec.seq().into_owned(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:101:16 [INFO] [stdout] | [INFO] [stdout] 101 | let cost = m.cost; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_start`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:102:17 [INFO] [stdout] | [INFO] [stdout] 102 | let start = m.text_start; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:103:15 [INFO] [stdout] | [INFO] [stdout] 103 | let end = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::CachedRev::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:104:18 [INFO] [stdout] | [INFO] [stdout] 104 | let slice = &cached_text.text.as_ref()[start..end]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:107:24 [INFO] [stdout] | [INFO] [stdout] 107 | let slice_str = if m.strand == Strand::Rc { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cigar`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:121:17 [INFO] [stdout] | [INFO] [stdout] 121 | let cigar = m.cigar.to_string(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:122:24 [INFO] [stdout] | [INFO] [stdout] 122 | let strand = match m.strand { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:139:42 [INFO] [stdout] | [INFO] [stdout] 139 | SearchWrapper::Ascii(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:140:40 [INFO] [stdout] | [INFO] [stdout] 140 | SearchWrapper::Dna(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:141:42 [INFO] [stdout] | [INFO] [stdout] 141 | SearchWrapper::Iupac(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::input_iterator::InputIterator::<'a>::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:169:44 [INFO] [stdout] | [INFO] [stdout] 169 | let ref task_iterator = InputIterator::new(&args.path, &patterns, None, rc); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:80 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:74 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:80 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::input_iterator::InputIterator::<'a>::next_batch`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:180:55 [INFO] [stdout] | [INFO] [stdout] 180 | while let Some(batch) = task_iterator.next_batch() { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:56 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:56 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:75 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:75 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:187:34 [INFO] [stdout] | [INFO] [stdout] 187 | ... &item.pattern.id, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:187:34 [INFO] [stdout] | [INFO] [stdout] 187 | ... &item.pattern.id, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:188:34 [INFO] [stdout] | [INFO] [stdout] 188 | ... &item.text.id, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:188:34 [INFO] [stdout] | [INFO] [stdout] 188 | ... &item.text.id, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:189:34 [INFO] [stdout] | [INFO] [stdout] 189 | ... &item.text.seq, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:189:34 [INFO] [stdout] | [INFO] [stdout] 189 | ... &item.text.seq, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::is_match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:143:16 [INFO] [stdout] | [INFO] [stdout] 143 | if !P::is_match(*c1, *c2) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::complement`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:170:28 [INFO] [stdout] | [INFO] [stdout] 170 | let pam_compl = Iupac::complement(pam); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:183:13 [INFO] [stdout] | [INFO] [stdout] 183 | id: format!("guide_{}", i + 1), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:184:13 [INFO] [stdout] | [INFO] [stdout] 184 | seq: seq.clone(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::input_iterator::InputIterator::<'a>::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:189:36 [INFO] [stdout] | [INFO] [stdout] 189 | let task_iter = InputIterator::new(&args.path, &queries, None, true); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:196:55 [INFO] [stdout] | [INFO] [stdout] 196 | let mut searcher = Searcher::::new(args.no_rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::input_iterator::InputIterator::<'a>::next_batch`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:207:51 [INFO] [stdout] | [INFO] [stdout] 207 | while let Some(batch) = task_iter.next_batch() { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:209:47 [INFO] [stdout] | [INFO] [stdout] 209 | let guide_sequence = &item.pattern.seq; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:209:47 [INFO] [stdout] | [INFO] [stdout] 209 | let guide_sequence = &item.pattern.seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:210:40 [INFO] [stdout] | [INFO] [stdout] 210 | let id_text = &item.text; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:212:35 [INFO] [stdout] | [INFO] [stdout] 212 | let id = &id_text.id; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:213:37 [INFO] [stdout] | [INFO] [stdout] 213 | let text = &id_text.seq; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_with_fn`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:216:38 [INFO] [stdout] | [INFO] [stdout] 216 | ... searcher.search_with_fn(guide_sequence, text, args.k, true, filter_fn) [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_all`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:218:38 [INFO] [stdout] | [INFO] [stdout] 218 | ... searcher.search_all(guide_sequence, text, args.k) [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_start`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:226:41 [INFO] [stdout] | [INFO] [stdout] 226 | ... let start = m.text_start; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:227:39 [INFO] [stdout] | [INFO] [stdout] 227 | ... let end = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::RcSearchAble::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:228:45 [INFO] [stdout] | [INFO] [stdout] 228 | ... let text = text.text(); [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:244:51 [INFO] [stdout] | [INFO] [stdout] 244 | ... let match_region = if m.strand == Strand::Rc { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:250:40 [INFO] [stdout] | [INFO] [stdout] 250 | ... let cost = m.cost; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cigar`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:251:41 [INFO] [stdout] | [INFO] [stdout] 251 | ... let cigar = m.cigar.to_string(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/crispr.rs:252:48 [INFO] [stdout] | [INFO] [stdout] 252 | ... let strand = match m.strand { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:65:13 [INFO] [stdout] | [INFO] [stdout] 65 | id: "pattern".to_string(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:66:13 [INFO] [stdout] | [INFO] [stdout] 66 | seq: p.as_bytes().to_vec(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | id, [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | seq: seqrec.seq().into_owned(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:101:16 [INFO] [stdout] | [INFO] [stdout] 101 | let cost = m.cost; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_start`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:102:17 [INFO] [stdout] | [INFO] [stdout] 102 | let start = m.text_start; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:103:15 [INFO] [stdout] | [INFO] [stdout] 103 | let end = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::CachedRev::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:104:18 [INFO] [stdout] | [INFO] [stdout] 104 | let slice = &cached_text.text.as_ref()[start..end]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:107:24 [INFO] [stdout] | [INFO] [stdout] 107 | let slice_str = if m.strand == Strand::Rc { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cigar`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:121:17 [INFO] [stdout] | [INFO] [stdout] 121 | let cigar = m.cigar.to_string(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::strand`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:122:24 [INFO] [stdout] | [INFO] [stdout] 122 | let strand = match m.strand { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:139:42 [INFO] [stdout] | [INFO] [stdout] 139 | SearchWrapper::Ascii(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:140:40 [INFO] [stdout] | [INFO] [stdout] 140 | SearchWrapper::Dna(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:141:42 [INFO] [stdout] | [INFO] [stdout] 141 | SearchWrapper::Iupac(s) => s.search(pattern, input, k), [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::input_iterator::InputIterator::<'a>::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:169:44 [INFO] [stdout] | [INFO] [stdout] 169 | let ref task_iterator = InputIterator::new(&args.path, &patterns, None, rc); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:175:80 [INFO] [stdout] | [INFO] [stdout] 175 | Alphabet::Ascii => SearchWrapper::Ascii(Searcher::::new(false, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:176:74 [INFO] [stdout] | [INFO] [stdout] 176 | Alphabet::Dna => SearchWrapper::Dna(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:177:80 [INFO] [stdout] | [INFO] [stdout] 177 | Alphabet::Iupac => SearchWrapper::Iupac(Searcher::::new(rc, None)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::input_iterator::InputIterator::<'a>::next_batch`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:180:55 [INFO] [stdout] | [INFO] [stdout] 180 | while let Some(batch) = task_iterator.next_batch() { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:56 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:56 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:75 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:182:75 [INFO] [stdout] | [INFO] [stdout] 182 | let matches = searcher.search(&item.pattern.seq, &item.text.seq, k); [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::pattern`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:187:34 [INFO] [stdout] | [INFO] [stdout] 187 | ... &item.pattern.id, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::PatternRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:187:34 [INFO] [stdout] | [INFO] [stdout] 187 | ... &item.pattern.id, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:188:34 [INFO] [stdout] | [INFO] [stdout] 188 | ... &item.text.id, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::id`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:188:34 [INFO] [stdout] | [INFO] [stdout] 188 | ... &item.text.id, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::Task::text`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:189:34 [INFO] [stdout] | [INFO] [stdout] 189 | ... &item.text.seq, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::input_iterator::TextRecord::seq`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> bin/search.rs:189:34 [INFO] [stdout] | [INFO] [stdout] 189 | ... &item.text.seq, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling edlib_rs v0.2.0 (https://github.com/pairwise-alignment/edlib-rs#57d6aad3) [INFO] [stderr] Checking benchmarks v0.1.0 (/opt/rustwide/workdir/evals) [INFO] [stdout] warning: use of deprecated module `sassy::profiles`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:6:12 [INFO] [stdout] | [INFO] [stdout] 6 | use sassy::profiles::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:27:16 [INFO] [stdout] | [INFO] [stdout] 27 | if Iupac::is_match(a, b) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use sassy::{Match, Searcher}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:4:20 [INFO] [stdout] | [INFO] [stdout] 4 | use sassy::{Match, Searcher}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:171:59 [INFO] [stdout] | [INFO] [stdout] 171 | type SearchFn = Box Vec>; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:32 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:60 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:32 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:60 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:32 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:60 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::Searcher; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:28 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:56 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::Searcher; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:33:25 [INFO] [stdout] | [INFO] [stdout] 33 | P: sassy::profiles::Profile, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:36:24 [INFO] [stdout] | [INFO] [stdout] 36 | let mut searcher = Searcher::

::new_fwd(); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:79:50 [INFO] [stdout] | [INFO] [stdout] 79 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:82:50 [INFO] [stdout] | [INFO] [stdout] 82 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:85:50 [INFO] [stdout] | [INFO] [stdout] 85 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated module `sassy::profiles`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:6:12 [INFO] [stdout] | [INFO] [stdout] 6 | use sassy::profiles::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:27:16 [INFO] [stdout] | [INFO] [stdout] 27 | if Iupac::is_match(a, b) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use sassy::{Match, Searcher}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:4:20 [INFO] [stdout] | [INFO] [stdout] 4 | use sassy::{Match, Searcher}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:171:59 [INFO] [stdout] | [INFO] [stdout] 171 | type SearchFn = Box Vec>; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:32 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:60 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:32 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:60 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:32 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:60 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::Searcher; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:28 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:56 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use sassy::Searcher; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated trait `sassy::profiles::Profile`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:33:25 [INFO] [stdout] | [INFO] [stdout] 33 | P: sassy::profiles::Profile, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::Searcher`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:36:24 [INFO] [stdout] | [INFO] [stdout] 36 | let mut searcher = Searcher::

::new_fwd(); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Dna`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:79:50 [INFO] [stdout] | [INFO] [stdout] 79 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Iupac`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:82:50 [INFO] [stdout] | [INFO] [stdout] 82 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `sassy::profiles::Ascii`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:85:50 [INFO] [stdout] | [INFO] [stdout] 85 | benchmark_profile::(&query, &text, config.k, iterations); [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::is_match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:27:23 [INFO] [stdout] | [INFO] [stdout] 27 | if Iupac::is_match(a, b) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:68 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:183:46 [INFO] [stdout] | [INFO] [stdout] 183 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:66 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:189:46 [INFO] [stdout] | [INFO] [stdout] 189 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:68 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:195:46 [INFO] [stdout] | [INFO] [stdout] 195 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new_fwd_with_overhang`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:64 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_all`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:69:32 [INFO] [stdout] | [INFO] [stdout] 69 | let matches = searcher.search_all(&query, &text, query.len() * 2); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:75:27 [INFO] [stdout] | [INFO] [stdout] 75 | let end_pos = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:87:65 [INFO] [stdout] | [INFO] [stdout] 87 | writeln!(file, "{},{},{}", alpha, adjusted_end_pos, m.cost).unwrap(); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new_fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:36:39 [INFO] [stdout] | [INFO] [stdout] 36 | let mut searcher = Searcher::

::new_fwd(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:40:33 [INFO] [stdout] | [INFO] [stdout] 40 | let _matches = searcher.search(query, &text, k); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:46:33 [INFO] [stdout] | [INFO] [stdout] 46 | let _matches = searcher.search(query, &text, k); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::profiles::Profile::is_match`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/edlib.rs:27:23 [INFO] [stdout] | [INFO] [stdout] 27 | if Iupac::is_match(a, b) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:182:68 [INFO] [stdout] | [INFO] [stdout] 182 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:183:46 [INFO] [stdout] | [INFO] [stdout] 183 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:188:66 [INFO] [stdout] | [INFO] [stdout] 188 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:189:46 [INFO] [stdout] | [INFO] [stdout] 189 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:194:68 [INFO] [stdout] | [INFO] [stdout] 194 | let mut searcher = Searcher::::new(rc, None); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/edlib_bench/runner.rs:195:46 [INFO] [stdout] | [INFO] [stdout] 195 | Box::new(move |q, t, k| searcher.search(&q, &t, k)) [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new_fwd_with_overhang`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:68:64 [INFO] [stdout] | [INFO] [stdout] 68 | let mut searcher = Searcher::::new_fwd_with_overhang(alpha); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search_all`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:69:32 [INFO] [stdout] | [INFO] [stdout] 69 | let matches = searcher.search_all(&query, &text, query.len() * 2); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::text_end`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:75:27 [INFO] [stdout] | [INFO] [stdout] 75 | let end_pos = m.text_end; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `sassy::Match::cost`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/overhang/runner.rs:87:65 [INFO] [stdout] | [INFO] [stdout] 87 | writeln!(file, "{},{},{}", alpha, adjusted_end_pos, m.cost).unwrap(); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `sassy::Searcher::

::new_fwd`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:36:39 [INFO] [stdout] | [INFO] [stdout] 36 | let mut searcher = Searcher::

::new_fwd(); [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:40:33 [INFO] [stdout] | [INFO] [stdout] 40 | let _matches = searcher.search(query, &text, k); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `sassy::Searcher::

::search`: Sassy currently requires x86-64 with AVX2 and BMI2 instructions. Compile using `-C target-cpu=x64-64-v3`. [INFO] [stdout] --> evals/src/profiles/runner.rs:46:33 [INFO] [stdout] | [INFO] [stdout] 46 | let _matches = searcher.search(query, &text, k); [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 39s [INFO] running `Command { std: "docker" "inspect" "82c91e43c14da7771fda67d6463ce4fa6bd4106a519dce28e88a514eeabbb572", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82c91e43c14da7771fda67d6463ce4fa6bd4106a519dce28e88a514eeabbb572", kill_on_drop: false }` [INFO] [stdout] 82c91e43c14da7771fda67d6463ce4fa6bd4106a519dce28e88a514eeabbb572