[INFO] cloning repository https://github.com/pangenome/allwave [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pangenome/allwave" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1fd52bf23f4d6ea1f97b28162f696ce25b396d2c [INFO] checking pangenome/allwave against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/pangenome/allwave [INFO] finished tweaking git repo https://github.com/pangenome/allwave [INFO] tweaked toml for git repo https://github.com/pangenome/allwave written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/pangenome/allwave on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/pangenome/allwave already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e2a5c62408ec5f2dbed9c35717f5c1b2123bd3a5bec1b240017e80decf0f8cb6 [INFO] running `Command { std: "docker" "start" "-a" "e2a5c62408ec5f2dbed9c35717f5c1b2123bd3a5bec1b240017e80decf0f8cb6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e2a5c62408ec5f2dbed9c35717f5c1b2123bd3a5bec1b240017e80decf0f8cb6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e2a5c62408ec5f2dbed9c35717f5c1b2123bd3a5bec1b240017e80decf0f8cb6", kill_on_drop: false }` [INFO] [stdout] e2a5c62408ec5f2dbed9c35717f5c1b2123bd3a5bec1b240017e80decf0f8cb6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 13382026822cd4bac33b546d066b18744383dc21138e603fcd0d2d05a9faede7 [INFO] running `Command { std: "docker" "start" "-a" "13382026822cd4bac33b546d066b18744383dc21138e603fcd0d2d05a9faede7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Checking cfg-if v1.0.1 [INFO] [stderr] Checking memchr v2.7.5 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking zlib-rs v0.5.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling cc v1.2.29 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Checking bytemuck v1.23.1 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Checking libz-rs-sys v0.5.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking bstr v1.12.0 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking hashbrown v0.15.4 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Checking anstyle v1.0.11 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking anstyle-query v1.1.3 [INFO] [stderr] Checking bytes v1.10.1 [INFO] [stderr] Checking anstream v0.6.19 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking noodles-core v0.17.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking clap_lex v0.7.5 [INFO] [stderr] Compiling lib_wfa2 v0.1.0 (https://github.com/ekg/lib_wfa2?rev=819b82cd842aabedcb962fd5b82380fe454234f6#819b82cd) [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking indexmap v2.10.0 [INFO] [stderr] Checking noodles-bgzf v0.37.0 [INFO] [stderr] Checking unicode-width v0.2.1 [INFO] [stderr] Checking linux-raw-sys v0.9.4 [INFO] [stderr] Checking bitflags v2.9.1 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking noodles-fasta v0.50.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] error: failed to run custom build command for `lib_wfa2 v0.1.0 (https://github.com/ekg/lib_wfa2?rev=819b82cd842aabedcb962fd5b82380fe454234f6#819b82cd)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/lib_wfa2-c38f3ef104b18b4c/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' (2048) panicked at /opt/rustwide/cargo-home/git/checkouts/lib_wfa2-c3eee27b1ab09b91/819b82c/build.rs:90:9: [INFO] [stderr] Failed to build WFA2-lib: Make failed: mkdir: cannot create directory 'bin': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'build': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'build': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'lib': Read-only file system [INFO] [stderr] make: *** [Makefile:70: setup] Error 1 [INFO] [stderr] [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5bbaad55d2e2 - std::backtrace_rs::backtrace::libunwind::trace::h105f921882c12e03 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5bbaad55d2e2 - std::backtrace_rs::backtrace::trace_unsynchronized::hc8b40918ba88bae2 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5bbaad55d2e2 - std::sys::backtrace::_print_fmt::h61144b3593b669a6 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5bbaad55d2e2 - ::fmt::ha7f14f4d725d0e1f [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5bbaad57c5df - core::fmt::rt::Argument::fmt::h291cffbfb6f5f437 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5bbaad57c5df - core::fmt::write::h613c8eb2432c6a8e [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5bbaad54ed53 - std::io::default_write_fmt::h1b19b0ce9c092acc [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5bbaad54ed53 - std::io::Write::write_fmt::ha60efb35d66e9b8c [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5bbaad55d5b2 - std::sys::backtrace::BacktraceLock::print::hb1963680433203b9 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5bbaad54c47c - std::panicking::default_hook::{{closure}}::h12644fad1f9f9c3f [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5bbaad54c2b6 - std::panicking::default_hook::h92d7423bfb093343 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5bbaad54be3c - std::panicking::panic_with_hook::hfd863520fce8e281 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5bbaad55d66a - std::panicking::panic_handler::{{closure}}::h75bad88e9628e7c4 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x5bbaad55d5c9 - std::sys::backtrace::__rust_end_short_backtrace::hba2ee9743eb3598b [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5bbaad54bd9d - __rustc[d20f6e1e05d5ea87]::rust_begin_unwind [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5bbaad57e6a0 - core::panicking::panic_fmt::h291b19446b355b1a [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5bbaad5303c7 - build_script_build::main::h9536155341e5b470 [INFO] [stderr] 17: 0x5bbaad535563 - core::ops::function::FnOnce::call_once::hc219d26a3bdf4371 [INFO] [stderr] 18: 0x5bbaad535dd6 - std::sys::backtrace::__rust_begin_short_backtrace::h3aad119e77a1ef79 [INFO] [stderr] 19: 0x5bbaad535db9 - std::rt::lang_start::{{closure}}::hedbe33add561a790 [INFO] [stderr] 20: 0x5bbaad55de10 - core::ops::function::impls:: for &F>::call_once::hd30f70589ce52217 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x5bbaad55de10 - std::panicking::catch_unwind::do_call::h229a800b64964a72 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x5bbaad55de10 - std::panicking::catch_unwind::hf5b1c782bbaa8c87 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x5bbaad55de10 - std::panic::catch_unwind::h44fb21a21f79e7af [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x5bbaad55de10 - std::rt::lang_start_internal::{{closure}}::h3d19e32b9588f707 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x5bbaad55de10 - std::panicking::catch_unwind::do_call::hf0c858106eb39fbd [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x5bbaad55de10 - std::panicking::catch_unwind::h92692cc8e925ec21 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x5bbaad55de10 - std::panic::catch_unwind::h4f023f48f37702a5 [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5bbaad55de10 - std::rt::lang_start_internal::h80fdaffb9834036d [INFO] [stderr] at /rustc/a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x5bbaad535da1 - std::rt::lang_start::h91c754367fc12833 [INFO] [stderr] 30: 0x5bbaad533875 - main [INFO] [stderr] 31: 0x7c25492041ca - [INFO] [stderr] 32: 0x7c254920428b - __libc_start_main [INFO] [stderr] 33: 0x5bbaad530245 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "13382026822cd4bac33b546d066b18744383dc21138e603fcd0d2d05a9faede7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "13382026822cd4bac33b546d066b18744383dc21138e603fcd0d2d05a9faede7", kill_on_drop: false }` [INFO] [stdout] 13382026822cd4bac33b546d066b18744383dc21138e603fcd0d2d05a9faede7