[INFO] cloning repository https://github.com/hillst/bamreadfilt
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hillst/bamreadfilt" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 451c40cb7beb3c32eb64c42ed165b16126358e7d
[INFO] checking hillst/bamreadfilt against try#a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d for pr-145342-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] Updating files: 100% (10/10)
Updating files: 100% (10/10), done.
[INFO] started tweaking git repo https://github.com/hillst/bamreadfilt
[INFO] finished tweaking git repo https://github.com/hillst/bamreadfilt
[INFO] tweaked toml for git repo https://github.com/hillst/bamreadfilt written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/hillst/bamreadfilt on toolchain a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/hillst/bamreadfilt already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b0ea2286a2440996c7f61b73541f0a270b87f674d3e4176eab347565247bb696
[INFO] running `Command { std: "docker" "start" "-a" "b0ea2286a2440996c7f61b73541f0a270b87f674d3e4176eab347565247bb696", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b0ea2286a2440996c7f61b73541f0a270b87f674d3e4176eab347565247bb696", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b0ea2286a2440996c7f61b73541f0a270b87f674d3e4176eab347565247bb696", kill_on_drop: false }`
[INFO] [stdout] b0ea2286a2440996c7f61b73541f0a270b87f674d3e4176eab347565247bb696
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a4980311fb7bb9e7893708e6bd3fbbfb2819fd3d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8cba5da15d560dd123cd825cb5fa1d7ec29f38f2b46ce18ba8ee8063e6e55583
[INFO] running `Command { std: "docker" "start" "-a" "8cba5da15d560dd123cd825cb5fa1d7ec29f38f2b46ce18ba8ee8063e6e55583", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling ucd-util v0.1.8
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]    Compiling log v0.3.9
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling clap v2.33.1
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]     Checking tinyvec v0.3.3
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking lazy_static v0.2.11
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]     Checking argparse v0.2.2
[INFO] [stderr]     Checking idna v0.1.5
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling rust-htslib v0.16.0
[INFO] [stdout] error: expected one of `!`, `(`, `+`, `::`, or `<`, found `/`
[INFO] [stdout]   --> /opt/rustwide/target/debug/build/rust-htslib-b077fa87ba6be16a/out/bindings.rs:96:3543
[INFO] [stdout]    |
[INFO] [stdout] 96 | ...ruct htsFormat { pub category : htsFormatCategory , pub format : htsExactFormat , pub version : htsFormat_struct_(unnamed_at__/htslib/...
[INFO] [stdout]    |         --------- while parsing this struct                                                                                      ^ expected one of `!`, `(`, `+`, `::`, or `<`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: expected one of `!`, `(`, `)`, `+`, `,`, `::`, or `<`, found `/`
[INFO] [stdout]   --> /opt/rustwide/target/debug/build/rust-htslib-b077fa87ba6be16a/out/bindings.rs:96:3816
[INFO] [stdout]    |
[INFO] [stdout] 96 | ...one ) ] pub struct htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5) { pub major : :: std :: os :: raw :: c_short , pub minor ...
[INFO] [stdout]    |                                                     ^ expected one of 7 possible tokens
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:55:29
[INFO] [stdout]    |
[INFO] [stdout] 55 |     pub inner: *mut htslib::bam1_t,
[INFO] [stdout]    |                             ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_copy1` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:67:26
[INFO] [stdout]    |
[INFO] [stdout] 67 |         unsafe { htslib::bam_copy1(copy.inner, self.inner) };
[INFO] [stdout]    |                          ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_init1` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:76:38
[INFO] [stdout]    |
[INFO] [stdout] 76 |         let inner = unsafe { htslib::bam_init1() };
[INFO] [stdout]    |                                      ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:82:43
[INFO] [stdout]    |
[INFO] [stdout] 82 |     pub fn from_inner(inner: *mut htslib::bam1_t) -> Self {
[INFO] [stdout]    |                                           ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_parse1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:101:21
[INFO] [stdout]     |
[INFO] [stdout] 101 |             htslib::sam_parse1(&mut sam_string, header_view.inner_ptr_mut(), record.inner)
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:117:49
[INFO] [stdout]     |
[INFO] [stdout] 117 |     pub fn inner_mut(&mut self) -> &mut htslib::bam1_t {
[INFO] [stdout]     |                                                 ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:122:37
[INFO] [stdout]     |
[INFO] [stdout] 122 |     pub fn inner(&self) -> &htslib::bam1_t {
[INFO] [stdout]     |                                     ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:377:36
[INFO] [stdout]     |
[INFO] [stdout] 377 |         let aux = unsafe { htslib::bam_aux_get(self.inner, ffi::CString::new(tag).unwrap().as_ptr() as *mut i8 ) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2i` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:384:76
[INFO] [stdout]     |
[INFO] [stdout] 384 |                 b'c'|b'C'|b's'|b'S'|b'i'|b'I' => Some(Aux::Integer(htslib::bam_aux2i(aux))),
[INFO] [stdout]     |                                                                            ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2f` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:385:54
[INFO] [stdout]     |
[INFO] [stdout] 385 |                 b'f'|b'd' => Some(Aux::Float(htslib::bam_aux2f(aux))),
[INFO] [stdout]     |                                                      ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux2A` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:386:48
[INFO] [stdout]     |
[INFO] [stdout] 386 |                 b'A' => Some(Aux::Char(htslib::bam_aux2A(aux) as u8)),
[INFO] [stdout]     |                                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:403:44
[INFO] [stdout]     |
[INFO] [stdout] 403 |                 Aux::Integer(v) => htslib::bam_aux_append(self.inner, ctag, b'i' as i8, 4, [v].as_mut_ptr() as *mut u8),
[INFO] [stdout]     |                                            ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:404:42
[INFO] [stdout]     |
[INFO] [stdout] 404 |                 Aux::Float(v) => htslib::bam_aux_append(self.inner, ctag, b'f' as i8, 4, [v].as_mut_ptr() as *mut u8),
[INFO] [stdout]     |                                          ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:405:41
[INFO] [stdout]     |
[INFO] [stdout] 405 |                 Aux::Char(v) => htslib::bam_aux_append(self.inner, ctag, b'A' as i8, 1, [v].as_mut_ptr() as *mut u8),
[INFO] [stdout]     |                                         ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:406:43
[INFO] [stdout]     |
[INFO] [stdout] 406 |                 Aux::String(v) => htslib::bam_aux_append(
[INFO] [stdout]     |                                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:425:36
[INFO] [stdout]     |
[INFO] [stdout] 425 |         let aux = unsafe { htslib::bam_aux_get(self.inner, ffi::CString::new(tag).unwrap().as_ptr() as *mut i8 ) };
[INFO] [stdout]     |                                    ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_aux_del` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:430:25
[INFO] [stdout]     |
[INFO] [stdout] 430 |                 htslib::bam_aux_del(self.inner, aux);
[INFO] [stdout]     |                         ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_destroy1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/record.rs:454:30
[INFO] [stdout]     |
[INFO] [stdout] 454 |             unsafe { htslib::bam_destroy1(self.inner) };
[INFO] [stdout]     |                              ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:17:29
[INFO] [stdout]    |
[INFO] [stdout] 17 |     slice::Iter<'a, htslib::bam_pileup1_t>,
[INFO] [stdout]    |                             ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:18:20
[INFO] [stdout]    |
[INFO] [stdout] 18 |     fn(&'a htslib::bam_pileup1_t) -> Alignment<'a>
[INFO] [stdout]    |                    ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:24:27
[INFO] [stdout]    |
[INFO] [stdout] 24 |     inner: *const htslib::bam_pileup1_t,
[INFO] [stdout]    |                           ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:48:34
[INFO] [stdout]    |
[INFO] [stdout] 48 |     fn inner(&self) -> &[htslib::bam_pileup1_t] {
[INFO] [stdout]    |                                  ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:49:67
[INFO] [stdout]    |
[INFO] [stdout] 49 |         unsafe { slice::from_raw_parts(self.inner as *mut htslib::bam_pileup1_t, self.depth as usize) }
[INFO] [stdout]    |                                                                   ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:56:24
[INFO] [stdout]    |
[INFO] [stdout] 56 |     inner: &'a htslib::bam_pileup1_t,
[INFO] [stdout]    |                        ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:61:35
[INFO] [stdout]    |
[INFO] [stdout] 61 |     pub fn new(inner: &'a htslib::bam_pileup1_t) -> Self {
[INFO] [stdout]    |                                   ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:124:18
[INFO] [stdout]     |
[INFO] [stdout] 124 |     itr: htslib::bam_plp_t,
[INFO] [stdout]     |                  ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:129:48
[INFO] [stdout]     |
[INFO] [stdout] 129 |     pub fn new(reader: &'a mut R, itr: htslib::bam_plp_t) -> Self {
[INFO] [stdout]     |                                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_set_maxcnt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:134:26
[INFO] [stdout]     |
[INFO] [stdout] 134 |         unsafe { htslib::bam_plp_set_maxcnt(self.itr, depth as i32); }
[INFO] [stdout]     |                          ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_auto` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:145:21
[INFO] [stdout]     |
[INFO] [stdout] 145 |             htslib::bam_plp_auto(self.itr, &mut tid, &mut pos, &mut depth)
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_reset` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:167:21
[INFO] [stdout]     |
[INFO] [stdout] 167 |             htslib::bam_plp_reset(self.itr);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/pileup.rs:168:21
[INFO] [stdout]     |
[INFO] [stdout] 168 |             htslib::bam_plp_destroy(self.itr);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:47:36
[INFO] [stdout]    |
[INFO] [stdout] 47 |     fn bgzf(&self) -> *mut htslib::BGZF;
[INFO] [stdout]    |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_seek` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:54:36
[INFO] [stdout]    |
[INFO] [stdout] 54 |         let ret = unsafe { htslib::bgzf_seek(self.bgzf(), offset, libc::SEEK_SET) };
[INFO] [stdout]    |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:73:24
[INFO] [stdout]    |
[INFO] [stdout] 73 |     bgzf: *mut htslib::BGZF,
[INFO] [stdout]    |                        ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:115:39
[INFO] [stdout]     |
[INFO] [stdout] 115 |         let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stdout]     |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:119:83
[INFO] [stdout]     |
[INFO] [stdout] 119 |     extern fn pileup_read(data: *mut ::std::os::raw::c_void, record: *mut htslib::bam1_t) -> i32 {
[INFO] [stdout]     |                                                                                   ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:121:26
[INFO] [stdout]     |
[INFO] [stdout] 121 |         unsafe { htslib::bam_read1(_self.bgzf, record) }
[INFO] [stdout]     |                          ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:128:32
[INFO] [stdout]     |
[INFO] [stdout] 128 |         match unsafe { htslib::bam_read1(self.bgzf, record.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:147:21
[INFO] [stdout]     |
[INFO] [stdout] 147 |             htslib::bam_plp_init(
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:155:36
[INFO] [stdout]     |
[INFO] [stdout] 155 |     fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stdout]     |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:168:21
[INFO] [stdout]     |
[INFO] [stdout] 168 |             htslib::bgzf_close(self.bgzf);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:175:24
[INFO] [stdout]     |
[INFO] [stdout] 175 |     bgzf: *mut htslib::BGZF,
[INFO] [stdout]     |                        ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `hts_idx_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:177:23
[INFO] [stdout]     |
[INFO] [stdout] 177 |     idx: *mut htslib::hts_idx_t,
[INFO] [stdout]     |                       ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:178:31
[INFO] [stdout]     |
[INFO] [stdout] 178 |     itr: Option<*mut htslib:: hts_itr_t>,
[INFO] [stdout]     |                               ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:214:39
[INFO] [stdout]     |
[INFO] [stdout] 214 |         let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stdout]     |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_idx_load` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:216:21
[INFO] [stdout]     |
[INFO] [stdout] 216 |             htslib::hts_idx_load(
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:230:30
[INFO] [stdout]     |
[INFO] [stdout] 230 |             unsafe { htslib::hts_itr_destroy(itr) }
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_itr_queryi` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:233:21
[INFO] [stdout]     |
[INFO] [stdout] 233 |             htslib::sam_itr_queryi(self.idx, tid as i32, beg as i32, end as i32)
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:245:83
[INFO] [stdout]     |
[INFO] [stdout] 245 |     extern fn pileup_read(data: *mut ::std::os::raw::c_void, record: *mut htslib::bam1_t) -> i32 {
[INFO] [stdout]     |                                                                                   ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:249:43
[INFO] [stdout]     |
[INFO] [stdout] 249 |             None      => unsafe { htslib::bam_read1(_self.bgzf, record) } // ordinary reading
[INFO] [stdout]     |                                           ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:279:21
[INFO] [stdout]     |
[INFO] [stdout] 279 |             htslib::bam_plp_init(
[INFO] [stdout]     |                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:287:36
[INFO] [stdout]     |
[INFO] [stdout] 287 |     fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stdout]     |                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:301:25
[INFO] [stdout]     |
[INFO] [stdout] 301 |                 htslib::hts_itr_destroy(self.itr.unwrap());
[INFO] [stdout]     |                         ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_idx_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:303:21
[INFO] [stdout]     |
[INFO] [stdout] 303 |             htslib::hts_idx_destroy(self.idx);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:304:21
[INFO] [stdout]     |
[INFO] [stdout] 304 |             htslib::bgzf_close(self.bgzf);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:312:21
[INFO] [stdout]     |
[INFO] [stdout] 312 |     f: *mut htslib::BGZF,
[INFO] [stdout]     |                     ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:368:31
[INFO] [stdout]     |
[INFO] [stdout] 368 |             let rec = htslib::sam_hdr_parse(
[INFO] [stdout]     |                               ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:378:26
[INFO] [stdout]     |
[INFO] [stdout] 378 |         unsafe { htslib::bam_hdr_write(f, header_record); }
[INFO] [stdout]     |                          ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_mt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:389:34
[INFO] [stdout]     |
[INFO] [stdout] 389 |         let r = unsafe { htslib::bgzf_mt(self.f, n_threads as i32, 256) };
[INFO] [stdout]     |                                  ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_write1` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:403:29
[INFO] [stdout]     |
[INFO] [stdout] 403 |         if unsafe { htslib::bam_write1(self.f, record.inner) } == -1 {
[INFO] [stdout]     |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:422:21
[INFO] [stdout]     |
[INFO] [stdout] 422 |             htslib::bgzf_close(self.f);
[INFO] [stdout]     |                     ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:587:68
[INFO] [stdout]     |
[INFO] [stdout] 587 | fn bgzf_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::BGZF, BGZFError> {
[INFO] [stdout]     |                                                                    ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bgzf_open` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:589:17
[INFO] [stdout]     |
[INFO] [stdout] 589 |         htslib::bgzf_open(
[INFO] [stdout]     |                 ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:603:32
[INFO] [stdout]     |
[INFO] [stdout] 603 | fn itr_next(bgzf: *mut htslib::BGZF, itr: *mut htslib:: hts_itr_t, record: *mut htslib::bam1_t) -> i32 {
[INFO] [stdout]     |                                ^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:603:57
[INFO] [stdout]     |
[INFO] [stdout] 603 | fn itr_next(bgzf: *mut htslib::BGZF, itr: *mut htslib:: hts_itr_t, record: *mut htslib::bam1_t) -> i32 {
[INFO] [stdout]     |                                                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:603:89
[INFO] [stdout]     |
[INFO] [stdout] 603 | fn itr_next(bgzf: *mut htslib::BGZF, itr: *mut htslib:: hts_itr_t, record: *mut htslib::bam1_t) -> i32 {
[INFO] [stdout]     |                                                                                         ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_itr_next` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:605:17
[INFO] [stdout]     |
[INFO] [stdout] 605 |         htslib::hts_itr_next(
[INFO] [stdout]     |                 ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:616:25
[INFO] [stdout]     |
[INFO] [stdout] 616 |     inner: *mut htslib::bam_hdr_t,
[INFO] [stdout]     |                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:636:31
[INFO] [stdout]     |
[INFO] [stdout] 636 |             let rec = htslib::sam_hdr_parse(
[INFO] [stdout]     |                               ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:649:36
[INFO] [stdout]     |
[INFO] [stdout] 649 |     pub fn new(inner: *mut htslib::bam_hdr_t) -> Self {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:657:36
[INFO] [stdout]     |
[INFO] [stdout] 657 |     pub fn inner(&self) -> htslib::bam_hdr_t {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:663:47
[INFO] [stdout]     |
[INFO] [stdout] 663 |     pub fn inner_ptr(&self) -> *const htslib::bam_hdr_t {
[INFO] [stdout]     |                                               ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:669:49
[INFO] [stdout]     |
[INFO] [stdout] 669 |     pub fn inner_ptr_mut(&self) -> *mut htslib::bam_hdr_t {
[INFO] [stdout]     |                                                 ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_name2id` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:675:21
[INFO] [stdout]     |
[INFO] [stdout] 675 |             htslib::bam_name2id(
[INFO] [stdout]     |                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:718:37
[INFO] [stdout]     |
[INFO] [stdout] 718 |             inner: unsafe { htslib::bam_hdr_dup(self.inner) },
[INFO] [stdout]     |                                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bam_hdr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bam/mod.rs:728:30
[INFO] [stdout]     |
[INFO] [stdout] 728 |             unsafe { htslib::bam_hdr_destroy(self.inner); }
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:83:29
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub inner: *mut htslib::bcf1_t,
[INFO] [stdout]    |                             ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_init` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:91:38
[INFO] [stdout]    |
[INFO] [stdout] 91 |         let inner = unsafe { htslib::bcf_init() };
[INFO] [stdout]    |                                      ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:105:37
[INFO] [stdout]     |
[INFO] [stdout] 105 |     pub fn inner(&self) -> &htslib::bcf1_t {
[INFO] [stdout]     |                                     ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:109:49
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub fn inner_mut(&mut self) -> &mut htslib::bcf1_t {
[INFO] [stdout]     |                                                 ^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:135:26
[INFO] [stdout]     |
[INFO] [stdout] 135 |         unsafe { htslib::bcf_unpack(self.inner, htslib::BCF_UN_STR as i32) };
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_format` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:198:24
[INFO] [stdout]     |
[INFO] [stdout] 198 |             if htslib::bcf_update_format(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_update_info` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:228:24
[INFO] [stdout]     |
[INFO] [stdout] 228 |             if htslib::bcf_update_info(
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_trim_alleles` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:246:32
[INFO] [stdout]     |
[INFO] [stdout] 246 |         match unsafe { htslib::bcf_trim_alleles(self.header().inner, self.inner) } {
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:350:26
[INFO] [stdout]     |
[INFO] [stdout] 350 |         unsafe { htslib::bcf_destroy(self.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_info_values` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:370:21
[INFO] [stdout]     |
[INFO] [stdout] 370 |             htslib::bcf_get_info_values(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:467:25
[INFO] [stdout]     |
[INFO] [stdout] 467 |     inner: *mut htslib::bcf_fmt_t,
[INFO] [stdout]     |                         ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_fmt` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:474:38
[INFO] [stdout]     |
[INFO] [stdout] 474 |         let inner = unsafe { htslib::bcf_get_fmt(
[INFO] [stdout]     |                                      ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:482:37
[INFO] [stdout]     |
[INFO] [stdout] 482 |     pub fn inner(&self) -> &htslib::bcf_fmt_t {
[INFO] [stdout]     |                                     ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:486:49
[INFO] [stdout]     |
[INFO] [stdout] 486 |     pub fn inner_mut(&mut self) -> &mut htslib::bcf_fmt_t {
[INFO] [stdout]     |                                                 ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_get_format_values` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/record.rs:498:21
[INFO] [stdout]     |
[INFO] [stdout] 498 |             htslib::bcf_get_format_values(
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:19:29
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stdout]    |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_init` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:28:37
[INFO] [stdout]    |
[INFO] [stdout] 28 |             inner: unsafe { htslib::bcf_hdr_init(ffi::CString::new(&b"w"[..]).unwrap().as_ptr()) },
[INFO] [stdout]    |                                     ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:34:42
[INFO] [stdout]    |
[INFO] [stdout] 34 |         Header { inner: unsafe { htslib::bcf_hdr_dup(header.inner) }, subset: None }
[INFO] [stdout]    |                                          ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_subset` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:42:21
[INFO] [stdout]    |
[INFO] [stdout] 42 |             htslib::bcf_hdr_subset(
[INFO] [stdout]    |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_add_sample` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:58:26
[INFO] [stdout]    |
[INFO] [stdout] 58 |         unsafe { htslib::bcf_hdr_add_sample(self.inner, ffi::CString::new(sample).unwrap().as_ptr()) };
[INFO] [stdout]    |                          ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_append` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:64:26
[INFO] [stdout]    |
[INFO] [stdout] 64 |         unsafe { htslib::bcf_hdr_append(self.inner, ffi::CString::new(record).unwrap().as_ptr()) };
[INFO] [stdout]    |                          ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_remove` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |             htslib::bcf_hdr_remove(self.inner, htslib::BCF_HL_INFO as i32, tag.as_ptr() as *const i8);
[INFO] [stdout]    |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_remove` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:77:21
[INFO] [stdout]    |
[INFO] [stdout] 77 |             htslib::bcf_hdr_remove(
[INFO] [stdout]    |                     ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:90:26
[INFO] [stdout]    |
[INFO] [stdout] 90 |         unsafe { htslib::bcf_hdr_destroy(self.inner) };
[INFO] [stdout]    |                          ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:97:29
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stdout]    |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:102:36
[INFO] [stdout]     |
[INFO] [stdout] 102 |     pub fn new(inner: *mut htslib::bcf_hdr_t) -> Self {
[INFO] [stdout]     |                                    ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:107:32
[INFO] [stdout]     |
[INFO] [stdout] 107 |     fn inner(&self) -> htslib::bcf_hdr_t {
[INFO] [stdout]     |                                ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:130:27
[INFO] [stdout]     |
[INFO] [stdout] 130 |             match htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                           ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:151:30
[INFO] [stdout]     |
[INFO] [stdout] 151 |             let id = htslib::bcf_hdr_id2int(
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:188:37
[INFO] [stdout]     |
[INFO] [stdout] 188 |             inner: unsafe { htslib::bcf_hdr_dup(self.inner) }
[INFO] [stdout]     |                                     ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/header.rs:197:21
[INFO] [stdout]     |
[INFO] [stdout] 197 |             htslib::bcf_hdr_destroy(self.inner);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:26:25
[INFO] [stdout]    |
[INFO] [stdout] 26 |     inner: *mut htslib::htsFile,
[INFO] [stdout]    |                         ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_read` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:59:39
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let header = unsafe { htslib::bcf_hdr_read(htsfile) };
[INFO] [stdout]    |                                       ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_read` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:79:32
[INFO] [stdout]    |
[INFO] [stdout] 79 |         match unsafe { htslib::bcf_read(self.inner, self.header.inner, record.inner) } {
[INFO] [stdout]    |                                ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:99:21
[INFO] [stdout]    |
[INFO] [stdout] 99 |             htslib::hts_close(self.inner);
[INFO] [stdout]    |                     ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stdout]    |
[INFO] [stdout]   ::: /opt/rustwide/target/debug/build/rust-htslib-b077fa87ba6be16a/out/bindings.rs:96:2
[INFO] [stdout]    |
[INFO] [stdout] 96 |  pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]    |  ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:107:25
[INFO] [stdout]     |
[INFO] [stdout] 107 |     inner: *mut htslib::htsFile,
[INFO] [stdout]     |                         ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:147:26
[INFO] [stdout]     |
[INFO] [stdout] 147 |         unsafe { htslib::bcf_hdr_write(htsfile, header.inner) };
[INFO] [stdout]     |                          ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:150:62
[INFO] [stdout]     |
[INFO] [stdout] 150 |             header: Rc::new(HeaderView::new(unsafe { htslib::bcf_hdr_dup(header.inner) })),
[INFO] [stdout]     |                                                              ^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_translate` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:168:21
[INFO] [stdout]     |
[INFO] [stdout] 168 |             htslib::bcf_translate(self.header.inner, record.header().inner, record.inner);
[INFO] [stdout]     |                     ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_subset` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:177:25
[INFO] [stdout]     |
[INFO] [stdout] 177 |                 htslib::bcf_subset(self.header.inner, record.inner, subset.len() as i32, subset.as_mut_ptr());
[INFO] [stdout]     |                         ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `bcf_write` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:184:29
[INFO] [stdout]     |
[INFO] [stdout] 184 |         if unsafe { htslib::bcf_write(self.inner, self.header.inner, record.inner) } == -1 {
[INFO] [stdout]     |                             ^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:197:21
[INFO] [stdout]     |
[INFO] [stdout] 197 |             htslib::hts_close(self.inner);
[INFO] [stdout]     |                     ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/target/debug/build/rust-htslib-b077fa87ba6be16a/out/bindings.rs:96:2
[INFO] [stdout]     |
[INFO] [stdout]  96 |  pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]     |  ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:246:62
[INFO] [stdout]     |
[INFO] [stdout] 246 | fn bcf_open(path: &[u8], mode: &[u8]) -> Result<*mut htslib::htsFile, BCFError> {
[INFO] [stdout]     |                                                              ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/bcf/mod.rs:249:17
[INFO] [stdout]     |
[INFO] [stdout] 249 |         htslib::hts_open(
[INFO] [stdout]     |                 ^^^^^^^^ not found in `htslib`
[INFO] [stdout]     |
[INFO] [stdout] note: function `sam::hts_open` exists but is inaccessible
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:17:1
[INFO] [stdout]     |
[INFO] [stdout]  17 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not accessible
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:12:21
[INFO] [stdout]    |
[INFO] [stdout] 12 |     f: *mut htslib::htsFile,
[INFO] [stdout]    |                     ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:17:67
[INFO] [stdout]    |
[INFO] [stdout] 17 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stdout]    |                                                                   ^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:19:17
[INFO] [stdout]    |
[INFO] [stdout] 19 |         htslib::hts_open(
[INFO] [stdout]    |                 ^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_hdr_write` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:59:26
[INFO] [stdout]    |
[INFO] [stdout] 59 |         unsafe { htslib::sam_hdr_write(f, &header_view.inner()); }
[INFO] [stdout]    |                          ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `sam_write1` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:69:29
[INFO] [stdout]    |
[INFO] [stdout] 69 |         if unsafe { htslib::sam_write1(self.f, &self.header.inner(), record.inner) } == -1 {
[INFO] [stdout]    |                             ^^^^^^^^^^ not found in `htslib`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.16.0/src/sam/mod.rs:82:21
[INFO] [stdout]    |
[INFO] [stdout] 82 |             htslib::hts_close(self.f);
[INFO] [stdout]    |                     ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stdout]    |
[INFO] [stdout]   ::: /opt/rustwide/target/debug/build/rust-htslib-b077fa87ba6be16a/out/bindings.rs:96:2
[INFO] [stdout]    |
[INFO] [stdout] 96 |  pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stdout]    |  ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0412, E0425.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0412`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rust-htslib` (lib) due to 128 previous errors
[INFO] running `Command { std: "docker" "inspect" "8cba5da15d560dd123cd825cb5fa1d7ec29f38f2b46ce18ba8ee8063e6e55583", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8cba5da15d560dd123cd825cb5fa1d7ec29f38f2b46ce18ba8ee8063e6e55583", kill_on_drop: false }`
[INFO] [stdout] 8cba5da15d560dd123cd825cb5fa1d7ec29f38f2b46ce18ba8ee8063e6e55583