[INFO] fetching crate rumi 0.2.1... [INFO] checking rumi-0.2.1 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342-1 [INFO] extracting crate rumi 0.2.1 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate rumi 0.2.1 [INFO] finished tweaking crates.io crate rumi 0.2.1 [INFO] tweaked toml for crates.io crate rumi 0.2.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rumi 0.2.1 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rumi 0.2.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded percent-encoding v2.1.0 [INFO] [stderr] Downloaded smallvec v0.6.10 [INFO] [stderr] Downloaded matches v0.1.8 [INFO] [stderr] Downloaded unicode-bidi v0.3.4 [INFO] [stderr] Downloaded snafu v0.5.0 [INFO] [stderr] Downloaded memoffset v0.5.1 [INFO] [stderr] Downloaded quick-error v1.2.2 [INFO] [stderr] Downloaded cexpr v0.3.5 [INFO] [stderr] Downloaded basebits v1.2.0 [INFO] [stderr] Downloaded nodrop v0.1.13 [INFO] [stderr] Downloaded unicode-xid v0.2.0 [INFO] [stderr] Downloaded atty v0.2.13 [INFO] [stderr] Downloaded proc-macro2 v1.0.6 [INFO] [stderr] Downloaded arrayvec v0.4.11 [INFO] [stderr] Downloaded rustc_version v0.2.3 [INFO] [stderr] Downloaded scopeguard v1.0.0 [INFO] [stderr] Downloaded crossbeam-epoch v0.7.2 [INFO] [stderr] Downloaded clang-sys v0.28.0 [INFO] [stderr] Downloaded rayon-core v1.5.0 [INFO] [stderr] Downloaded bindgen v0.51.1 [INFO] [stderr] Downloaded idna v0.2.0 [INFO] [stderr] Downloaded unicode-width v0.1.5 [INFO] [stderr] Downloaded serde v1.0.97 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded bzip2-sys v0.1.7 [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] [stderr] Downloaded backtrace-sys v0.1.32 [INFO] [stderr] Downloaded itertools v0.8.0 [INFO] [stderr] Downloaded aho-corasick v0.7.6 [INFO] [stderr] Downloaded crossbeam-deque v0.6.3 [INFO] [stderr] Downloaded clap v2.33.0 [INFO] [stderr] Downloaded crossbeam-queue v0.1.2 [INFO] [stderr] Downloaded rayon v1.1.0 [INFO] [stderr] Downloaded num_cpus v1.10.1 [INFO] [stderr] Downloaded regex-syntax v0.6.12 [INFO] [stderr] Downloaded nom v4.2.3 [INFO] [stderr] Downloaded syn v0.15.39 [INFO] [stderr] Downloaded version_check v0.1.5 [INFO] [stderr] Downloaded glob v0.2.11 [INFO] [stderr] Downloaded libloading v0.5.2 [INFO] [stderr] Downloaded regex v1.3.1 [INFO] [stderr] Downloaded ansi_term v0.11.0 [INFO] [stderr] Downloaded vec_map v0.8.1 [INFO] [stderr] Downloaded vcpkg v0.2.7 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded pkg-config v0.3.14 [INFO] [stderr] Downloaded libc v0.2.65 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded thread_local v0.3.6 [INFO] [stderr] Downloaded cfg-if v0.1.9 [INFO] [stderr] Downloaded rustc-demangle v0.1.16 [INFO] [stderr] Downloaded doc-comment v0.3.1 [INFO] [stderr] Downloaded semver-parser v0.7.0 [INFO] [stderr] Downloaded libz-sys v1.0.25 [INFO] [stderr] Downloaded semver v0.9.0 [INFO] [stderr] Downloaded humantime v1.2.0 [INFO] [stderr] Downloaded rust-htslib v0.26.0 [INFO] [stderr] Downloaded wincolor v1.0.1 [INFO] [stderr] Downloaded termcolor v1.0.5 [INFO] [stderr] Downloaded env_logger v0.6.2 [INFO] [stderr] Downloaded log v0.4.7 [INFO] [stderr] Downloaded which v3.1.0 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded backtrace v0.3.40 [INFO] [stderr] Downloaded crossbeam-utils v0.6.6 [INFO] [stderr] Downloaded byteorder v1.3.2 [INFO] [stderr] Downloaded serde_derive v1.0.97 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded memchr v2.2.1 [INFO] [stderr] Downloaded cc v1.0.37 [INFO] [stderr] Downloaded unicode-normalization v0.1.8 [INFO] [stderr] Downloaded quote v1.0.2 [INFO] [stderr] Downloaded winapi v0.3.7 [INFO] [stderr] Downloaded rustc-hash v1.0.1 [INFO] [stderr] Downloaded bitflags v1.2.1 [INFO] [stderr] Downloaded fs-utils v1.1.1 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded peeking_take_while v0.1.2 [INFO] [stderr] Downloaded shlex v0.1.1 [INFO] [stderr] Downloaded snafu-derive v0.5.0 [INFO] [stderr] Downloaded url v2.1.0 [INFO] [stderr] Downloaded either v1.5.2 [INFO] [stderr] Downloaded winapi-util v0.1.2 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 75dae7a19eeb6f56489eb6718a7f6c0e45c45e8672687db12e4b88821a44a55c [INFO] running `Command { std: "docker" "start" "-a" "75dae7a19eeb6f56489eb6718a7f6c0e45c45e8672687db12e4b88821a44a55c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "75dae7a19eeb6f56489eb6718a7f6c0e45c45e8672687db12e4b88821a44a55c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "75dae7a19eeb6f56489eb6718a7f6c0e45c45e8672687db12e4b88821a44a55c", kill_on_drop: false }` [INFO] [stdout] 75dae7a19eeb6f56489eb6718a7f6c0e45c45e8672687db12e4b88821a44a55c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 50e00621fdfd9d3f92fed7903491f7061283828ea5742d2083122b72738438c0 [INFO] running `Command { std: "docker" "start" "-a" "50e00621fdfd9d3f92fed7903491f7061283828ea5742d2083122b72738438c0", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Checking cfg-if v0.1.9 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking crossbeam-utils v0.6.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Checking nodrop v0.1.13 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking smallvec v0.6.10 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling serde v1.0.97 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Checking scopeguard v1.0.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Checking crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling rayon-core v1.5.0 [INFO] [stderr] Checking either v1.5.2 [INFO] [stderr] Checking rustc-demangle v0.1.16 [INFO] [stderr] Checking crossbeam-deque v0.6.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Checking num_cpus v1.10.1 [INFO] [stderr] Checking crossbeam-queue v0.1.2 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking itertools v0.8.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Checking basebits v1.2.0 [INFO] [stderr] Checking rayon v1.1.0 [INFO] [stderr] Checking backtrace v0.3.40 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking url v2.1.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.97 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Compiling rust-htslib v0.26.0 [INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.26.0` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-7c80ff2b3da0607f/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#define HAVE_LIBBZ2 1' >> config.h [INFO] [stderr] echo '#define HAVE_LIBLZMA 1' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#define HAVE_FSEEKO 1' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION "1.9"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/files.o cram/files.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/sam_header.o cram/sam_header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o [INFO] [stderr] ranlib libhts.a [INFO] [stderr] running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-685e3274e542dd3e/out/wrapper.o" "-c" "wrapper.c" [INFO] [stderr] exit status: 0 [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_AR = None [INFO] [stderr] AR = None [INFO] [stderr] running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-685e3274e542dd3e/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-685e3274e542dd3e/out/wrapper.o" [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rustc-link-lib=static=wrapper [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-685e3274e542dd3e/out [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hts.c: In function 'hts_idx_init': [INFO] [stderr] hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow] [INFO] [stderr] 1386 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; [INFO] [stderr] | ^~~ [INFO] [stderr] [INFO] [stderr] thread 'main' (1830) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.6/src/fallback.rs:594:9: [INFO] [stderr] "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56e531348522 - std::backtrace_rs::backtrace::libunwind::trace::h0fb8082ca5562a61 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x56e531348522 - std::backtrace_rs::backtrace::trace_unsynchronized::hfaa258994374a3cd [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x56e531348522 - std::sys::backtrace::_print_fmt::h11496fe34963a885 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x56e531348522 - ::fmt::hff1a9408d012ee89 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x56e53136c87f - core::fmt::rt::Argument::fmt::hf11195b61445f5d1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x56e53136c87f - core::fmt::write::h2f1fc679f228cc52 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x56e531338853 - std::io::default_write_fmt::hdd5e6d67566e664d [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x56e531338853 - std::io::Write::write_fmt::haa2231cbd9aebf95 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x56e531348372 - std::sys::backtrace::BacktraceLock::print::h28bfdbcac6d3828b [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x56e53133524c - std::panicking::default_hook::{{closure}}::h1f968e3a24b0e3b4 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x56e531335093 - std::panicking::default_hook::h43da101644971931 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x56e53133578a - std::panicking::panic_with_hook::hb4e916c3e65eccec [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x56e531347efa - std::panicking::panic_handler::{{closure}}::hbff715d0475cf1bd [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x56e531347e59 - std::sys::backtrace::__rust_end_short_backtrace::hd6f43484e45a4955 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x56e531335c7d - __rustc[b29d3319de9a3146]::rust_begin_unwind [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x56e531374f10 - core::panicking::panic_fmt::h5f8d281875be5ff1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x56e53122cdaf - proc_macro2::fallback::validate_ident::h9a3276e5aa1ead6f [INFO] [stderr] 17: 0x56e53122a961 - proc_macro2::fallback::Ident::_new::hbd4b1e3e37e9a002 [INFO] [stderr] 18: 0x56e531230daf - proc_macro2::fallback::Ident::new::h700cb98a85ffbf1b [INFO] [stderr] 19: 0x56e531229568 - proc_macro2::Ident::new::h2d5610a78020d775 [INFO] [stderr] 20: 0x56e53104dc95 - bindgen::ir::context::BindgenContext::rust_ident_raw::h13163abfca1759cc [INFO] [stderr] 21: 0x56e53104e380 - bindgen::ir::context::BindgenContext::rust_ident::h13c62bd61199fda9 [INFO] [stderr] 22: 0x56e53108305a - ::codegen::hd945169429d8a811 [INFO] [stderr] 23: 0x56e5310a1fcf - ::codegen::h7dddf89f9cc4d054 [INFO] [stderr] 24: 0x56e531032a29 - ::codegen::h2cb355368c34beaa [INFO] [stderr] 25: 0x56e53108ae1a - ::codegen::hd945169429d8a811 [INFO] [stderr] 26: 0x56e5310a1fcf - ::codegen::h7dddf89f9cc4d054 [INFO] [stderr] 27: 0x56e531032a29 - ::codegen::h2cb355368c34beaa [INFO] [stderr] 28: 0x56e5310eb805 - ::codegen::{{closure}}::h94264e8c3437c81c [INFO] [stderr] 29: 0x56e5310c70e1 - ::codegen::hb43797b11a7c3d48 [INFO] [stderr] 30: 0x56e531032a04 - ::codegen::h2cb355368c34beaa [INFO] [stderr] 31: 0x56e5310e10f2 - bindgen::codegen::codegen::{{closure}}::hb3c2d8fdade99e28 [INFO] [stderr] 32: 0x56e53104d118 - bindgen::ir::context::BindgenContext::gen::hd118e63c687e9de5 [INFO] [stderr] 33: 0x56e5310e970d - bindgen::codegen::codegen::h4fdd57898d11e60f [INFO] [stderr] 34: 0x56e53102212e - bindgen::Bindings::generate::h811c19e1e81e8408 [INFO] [stderr] 35: 0x56e531026e01 - bindgen::Builder::generate::hf8a49e5aea1a7647 [INFO] [stderr] 36: 0x56e530f94d8f - build_script_build::main::h90bdef8f31640792 [INFO] [stderr] 37: 0x56e530f92bf3 - core::ops::function::FnOnce::call_once::h96957cb1c463d1a1 [INFO] [stderr] 38: 0x56e530f93516 - std::sys::backtrace::__rust_begin_short_backtrace::h7ecadd2dec88f829 [INFO] [stderr] 39: 0x56e530f928b9 - std::rt::lang_start::{{closure}}::h4aa4c0ac7bab3c2e [INFO] [stderr] 40: 0x56e531348b30 - core::ops::function::impls:: for &F>::call_once::h32dc2b2f49a48277 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 41: 0x56e531348b30 - std::panicking::catch_unwind::do_call::h3353546a38525559 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x56e531348b30 - std::panicking::catch_unwind::h57fb70202d1ae368 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x56e531348b30 - std::panic::catch_unwind::h4b724a52bb5803b4 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x56e531348b30 - std::rt::lang_start_internal::{{closure}}::h3724b3072c80532a [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x56e531348b30 - std::panicking::catch_unwind::do_call::h4f6e90f858bd1c3f [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x56e531348b30 - std::panicking::catch_unwind::h81c085c0d350991c [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x56e531348b30 - std::panic::catch_unwind::h289049af1176d82a [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x56e531348b30 - std::rt::lang_start_internal::h3c37ebeb799b11e1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x56e530f928a1 - std::rt::lang_start::h2349cc621b2972eb [INFO] [stderr] 50: 0x56e530f96035 - main [INFO] [stderr] 51: 0x76586ca3a1ca - [INFO] [stderr] 52: 0x76586ca3a28b - __libc_start_main [INFO] [stderr] 53: 0x56e530f90ec5 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "50e00621fdfd9d3f92fed7903491f7061283828ea5742d2083122b72738438c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50e00621fdfd9d3f92fed7903491f7061283828ea5742d2083122b72738438c0", kill_on_drop: false }` [INFO] [stdout] 50e00621fdfd9d3f92fed7903491f7061283828ea5742d2083122b72738438c0