[INFO] fetching crate rdkit-sys 0.4.12...
[INFO] checking rdkit-sys-0.4.12 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342-1
[INFO] extracting crate rdkit-sys 0.4.12 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate rdkit-sys 0.4.12
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rdkit-sys 0.4.12
[INFO] tweaked toml for crates.io crate rdkit-sys 0.4.12 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rdkit-sys 0.4.12 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rdkit-sys 0.4.12 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.124
[INFO] [stderr]   Downloaded cxxbridge-macro v1.0.124
[INFO] [stderr]   Downloaded cc v1.0.101
[INFO] [stderr]   Downloaded cxx-build v1.0.124
[INFO] [stderr]   Downloaded cxx v1.0.124
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] eb2da00e0698a0851893a13a850a6655f1758831490abe72c3546e699b86eed6
[INFO] running `Command { std: "docker" "start" "-a" "eb2da00e0698a0851893a13a850a6655f1758831490abe72c3546e699b86eed6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "eb2da00e0698a0851893a13a850a6655f1758831490abe72c3546e699b86eed6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eb2da00e0698a0851893a13a850a6655f1758831490abe72c3546e699b86eed6", kill_on_drop: false }`
[INFO] [stdout] eb2da00e0698a0851893a13a850a6655f1758831490abe72c3546e699b86eed6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] df41bd0114adc542992798b423d8a08d013c6cd5afabc82d3ea914e560669948
[INFO] running `Command { std: "docker" "start" "-a" "df41bd0114adc542992798b423d8a08d013c6cd5afabc82d3ea914e560669948", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.101
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling scratch v1.0.7
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.124
[INFO] [stderr]    Compiling unicode-width v0.1.13
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling syn v2.0.68
[INFO] [stderr]    Compiling link-cplusplus v1.0.9
[INFO] [stderr]    Compiling cxx v1.0.124
[INFO] [stderr]    Compiling is-terminal v0.4.12
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling cxx-build v1.0.124
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.124
[INFO] [stderr]    Compiling regex v1.10.5
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling rdkit-sys v0.4.12 (/opt/rustwide/workdir)
[INFO] [stderr] warning: rdkit-sys@0.4.12: In file included from /opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc:1:
[INFO] [stderr] warning: rdkit-sys@0.4.12: /opt/rustwide/workdir/wrapper/include/scaffold_network.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory
[INFO] [stderr] warning: rdkit-sys@0.4.12:     4 | #include <GraphMol/GraphMol.h>
[INFO] [stderr] warning: rdkit-sys@0.4.12:       |          ^~~~~~~~~~~~~~~~~~~~~
[INFO] [stderr] warning: rdkit-sys@0.4.12: compilation terminated.
[INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.4.12 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-c1311c6ea26de887/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/periodic_table.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/periodic_table.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/scaffold_network.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/scaffold_network.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/substruct_match.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/substruct_match.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/mol_ops.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/mol_ops.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/fingerprint.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/fingerprint.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/rw_mol.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/rw_mol.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/descriptors.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/descriptors.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/mol_standardize.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/mol_standardize.h
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/src/ro_mol.cc
[INFO] [stderr]   cargo:rerun-if-changed=wrapper/include/ro_mol.h
[INFO] [stderr]   cargo:CXXBRIDGE_PREFIX=rdkit-sys
[INFO] [stderr]   cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/include
[INFO] [stderr]   cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/crate
[INFO] [stderr]   OUT_DIR = Some(/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out)
[INFO] [stderr]   TARGET = Some(x86_64-unknown-linux-gnu)
[INFO] [stderr]   OPT_LEVEL = Some(0)
[INFO] [stderr]   HOST = Some(x86_64-unknown-linux-gnu)
[INFO] [stderr]   cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu
[INFO] [stderr]   CXX_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu
[INFO] [stderr]   CXX_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_CXX
[INFO] [stderr]   HOST_CXX = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CXX
[INFO] [stderr]   CXX = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT
[INFO] [stderr]   RUSTC_WRAPPER = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some(true)
[INFO] [stderr]   CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87)
[INFO] [stderr]   cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu
[INFO] [stderr]   CXXFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu
[INFO] [stderr]   CXXFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_CXXFLAGS
[INFO] [stderr]   HOST_CXXFLAGS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CXXFLAGS
[INFO] [stderr]   CXXFLAGS = None
[INFO] [stderr]   cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc:1:
[INFO] [stderr]   cargo:warning=/opt/rustwide/workdir/wrapper/include/scaffold_network.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory
[INFO] [stderr]   cargo:warning=    4 | #include <GraphMol/GraphMol.h>
[INFO] [stderr]   cargo:warning=      |          ^~~~~~~~~~~~~~~~~~~~~
[INFO] [stderr]   cargo:warning=compilation terminated.
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   CXX include path:
[INFO] [stderr]     /opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/include
[INFO] [stderr]     /opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/crate
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   error occurred: Command "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/workdir" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/bbe41af344809b03-scaffold_network.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-15b038f92bc3c94b/out/cxxbridge/sources/rdkit-sys/src/bridge/scaffold_network.rs.cc" with args c++ did not execute successfully (status code exit status: 1).
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "df41bd0114adc542992798b423d8a08d013c6cd5afabc82d3ea914e560669948", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "df41bd0114adc542992798b423d8a08d013c6cd5afabc82d3ea914e560669948", kill_on_drop: false }`
[INFO] [stdout] df41bd0114adc542992798b423d8a08d013c6cd5afabc82d3ea914e560669948