[INFO] fetching crate nons 0.1.0... [INFO] checking nons-0.1.0 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342-1 [INFO] extracting crate nons 0.1.0 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate nons 0.1.0 [INFO] finished tweaking crates.io crate nons 0.1.0 [INFO] tweaked toml for crates.io crate nons 0.1.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate nons 0.1.0 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 57 packages to latest compatible versions [INFO] [stderr] Adding bio v0.14.2 (available: v2.3.0) [INFO] [stderr] Adding rust-htslib v0.12.1 (available: v0.50.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded ordered-float v0.5.2 [INFO] [stderr] Downloaded multimap v0.4.0 [INFO] [stderr] Downloaded bytecount v0.1.7 [INFO] [stderr] Downloaded bio v0.14.2 [INFO] [stderr] Downloaded ndarray v0.9.1 [INFO] [stderr] Downloaded itertools v0.6.5 [INFO] [stderr] Downloaded csv v0.15.0 [INFO] [stderr] Downloaded rust-htslib v0.12.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ab0377a05227aea27988881c2e7e9d793647f75a29b09c4147c96f0ecb5df4bd [INFO] running `Command { std: "docker" "start" "-a" "ab0377a05227aea27988881c2e7e9d793647f75a29b09c4147c96f0ecb5df4bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ab0377a05227aea27988881c2e7e9d793647f75a29b09c4147c96f0ecb5df4bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab0377a05227aea27988881c2e7e9d793647f75a29b09c4147c96f0ecb5df4bd", kill_on_drop: false }` [INFO] [stdout] ab0377a05227aea27988881c2e7e9d793647f75a29b09c4147c96f0ecb5df4bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5fa05cb5caab5d61b39b7e7a276be1d6687dcf2e1f646b9b0d7bab09a70f8d90 [INFO] running `Command { std: "docker" "start" "-a" "5fa05cb5caab5d61b39b7e7a276be1d6687dcf2e1f646b9b0d7bab09a70f8d90", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Checking tinyvec_macros v0.1.1 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking tinyvec v1.10.0 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking ucd-util v0.1.10 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking memchr v2.7.5 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking unicode-bidi v0.3.18 [INFO] [stderr] Checking unicode-normalization v0.1.24 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling num-complex v0.1.44 [INFO] [stderr] Checking matches v0.1.10 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Checking regex-syntax v0.5.6 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking bit-vec v0.4.4 [INFO] [stderr] Checking aho-corasick v0.6.10 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking utf8-ranges v1.0.5 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking rustc-serialize v0.3.25 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking bytecount v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking memchr v1.0.2 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v0.5.2 [INFO] [stderr] Checking approx v0.1.1 [INFO] [stderr] Checking csv v0.15.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio v0.14.2 [INFO] [stdout] error: cannot find derive macro `RustcDecodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/io/fasta.rs:350:10 [INFO] [stdout] | [INFO] [stdout] 350 | #[derive(RustcDecodable, Debug, Copy, Clone)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcEncodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/io/bed.rs:128:10 [INFO] [stdout] | [INFO] [stdout] 128 | #[derive(RustcEncodable, Default)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcDecodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:39:1 [INFO] [stdout] | [INFO] [stdout] 39 | / custom_derive! { [INFO] [stdout] 40 | | /// A newtype for probabilities. [INFO] [stdout] 41 | | /// [INFO] [stdout] 42 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 74 | | pub struct Prob(pub f64); [INFO] [stdout] 75 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcEncodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:39:1 [INFO] [stdout] | [INFO] [stdout] 39 | / custom_derive! { [INFO] [stdout] 40 | | /// A newtype for probabilities. [INFO] [stdout] 41 | | /// [INFO] [stdout] 42 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 74 | | pub struct Prob(pub f64); [INFO] [stdout] 75 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcDecodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:89:1 [INFO] [stdout] | [INFO] [stdout] 89 | / custom_derive! { [INFO] [stdout] 90 | | /// A newtype for log-scale probabilities. [INFO] [stdout] 91 | | /// [INFO] [stdout] 92 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 125 | | pub struct LogProb(pub f64); [INFO] [stdout] 126 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcEncodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:89:1 [INFO] [stdout] | [INFO] [stdout] 89 | / custom_derive! { [INFO] [stdout] 90 | | /// A newtype for log-scale probabilities. [INFO] [stdout] 91 | | /// [INFO] [stdout] 92 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 125 | | pub struct LogProb(pub f64); [INFO] [stdout] 126 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcDecodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:129:1 [INFO] [stdout] | [INFO] [stdout] 129 | / custom_derive! { [INFO] [stdout] 130 | | /// A newtype for PHRED-scale probabilities. [INFO] [stdout] 131 | | /// [INFO] [stdout] 132 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 160 | | pub struct PHREDProb(pub f64); [INFO] [stdout] 161 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: cannot find derive macro `RustcEncodable` in this scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/stats/probs/mod.rs:129:1 [INFO] [stdout] | [INFO] [stdout] 129 | / custom_derive! { [INFO] [stdout] 130 | | /// A newtype for PHRED-scale probabilities. [INFO] [stdout] 131 | | /// [INFO] [stdout] 132 | | /// # Example [INFO] [stdout] ... | [INFO] [stdout] 160 | | pub struct PHREDProb(pub f64); [INFO] [stdout] 161 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in the macro `custom_derive` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: the trait bound `IndexRecord: Decodable` is not satisfied [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/io/fasta.rs:112:31 [INFO] [stdout] | [INFO] [stdout] 112 | for row in fai_reader.decode() { [INFO] [stdout] | ^^^^^^ the trait `Decodable` is not implemented for `IndexRecord` [INFO] [stdout] | [INFO] [stdout] = help: the following other types implement trait `Decodable`: [INFO] [stdout] () [INFO] [stdout] (T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T10, T11) [INFO] [stdout] (T11,) [INFO] [stdout] (T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] and 71 others [INFO] [stdout] = note: required for `(std::string::String, IndexRecord)` to implement `Decodable` [INFO] [stdout] note: required by a bound in `csv::Reader::::decode` [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/csv-0.15.0/src/reader.rs:279:26 [INFO] [stdout] | [INFO] [stdout] 279 | pub fn decode<'a, D: Decodable>(&'a mut self) -> DecodedRecords<'a, R, D> { [INFO] [stdout] | ^^^^^^^^^ required by this bound in `Reader::::decode` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: the trait bound `IndexRecord: Decodable` is not satisfied [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/io/fasta.rs:112:20 [INFO] [stdout] | [INFO] [stdout] 112 | for row in fai_reader.decode() { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ the trait `Decodable` is not implemented for `IndexRecord` [INFO] [stdout] | [INFO] [stdout] = help: the following other types implement trait `Decodable`: [INFO] [stdout] () [INFO] [stdout] (T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T10, T11) [INFO] [stdout] (T11,) [INFO] [stdout] (T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] and 71 others [INFO] [stdout] = note: required for `(std::string::String, IndexRecord)` to implement `Decodable` [INFO] [stdout] = note: required for `DecodedRecords<'_, R, (std::string::String, IndexRecord)>` to implement `Iterator` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: the trait bound `bed::Record: Encodable` is not satisfied [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.14.2/src/io/bed.rs:120:31 [INFO] [stdout] | [INFO] [stdout] 120 | self.inner.encode(record) [INFO] [stdout] | ------ ^^^^^^ the trait `Encodable` is not implemented for `bed::Record` [INFO] [stdout] | | [INFO] [stdout] | required by a bound introduced by this call [INFO] [stdout] | [INFO] [stdout] = help: the following other types implement trait `Encodable`: [INFO] [stdout] &'a T [INFO] [stdout] () [INFO] [stdout] (T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T10, T11) [INFO] [stdout] (T11,) [INFO] [stdout] (T2, T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] (T3, T4, T5, T6, T7, T8, T9, T10, T11) [INFO] [stdout] and 75 others [INFO] [stdout] = note: required for `&bed::Record` to implement `Encodable` [INFO] [stdout] note: required by a bound in `csv::Writer::::encode` [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/csv-0.15.0/src/writer.rs:208:62 [INFO] [stdout] | [INFO] [stdout] 208 | pub fn encode(&mut self, e: E) -> Result<()> where E: Encodable { [INFO] [stdout] | ^^^^^^^^^ required by this bound in `Writer::::encode` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0277`. [INFO] [stdout] [INFO] [stderr] error: could not compile `bio` (lib) due to 11 previous errors [INFO] running `Command { std: "docker" "inspect" "5fa05cb5caab5d61b39b7e7a276be1d6687dcf2e1f646b9b0d7bab09a70f8d90", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5fa05cb5caab5d61b39b7e7a276be1d6687dcf2e1f646b9b0d7bab09a70f8d90", kill_on_drop: false }` [INFO] [stdout] 5fa05cb5caab5d61b39b7e7a276be1d6687dcf2e1f646b9b0d7bab09a70f8d90