[INFO] fetching crate hts 0.1.18... [INFO] checking hts-0.1.18 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342-1 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e5d0d2dd099818704cb174db68665ac80709c88b38e2d318143062d3e19d9af9 [INFO] running `Command { std: "docker" "start" "-a" "e5d0d2dd099818704cb174db68665ac80709c88b38e2d318143062d3e19d9af9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e5d0d2dd099818704cb174db68665ac80709c88b38e2d318143062d3e19d9af9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e5d0d2dd099818704cb174db68665ac80709c88b38e2d318143062d3e19d9af9", kill_on_drop: false }` [INFO] [stdout] e5d0d2dd099818704cb174db68665ac80709c88b38e2d318143062d3e19d9af9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c48d96d4668c756308d22bd907f3a8e65212a86d863aaae0f307c59a650822fc [INFO] running `Command { std: "docker" "start" "-a" "c48d96d4668c756308d22bd907f3a8e65212a86d863aaae0f307c59a650822fc", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling hts v0.1.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hts v0.1.18 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-7df553a851fb2359/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/hts-7e78c7686cbea720/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/hts-7e78c7686cbea720/out/htslib [INFO] [stderr] + git clone --recursive -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] [INFO] [stderr] thread 'main' (729) panicked at build.rs:33:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5a351c3e8c52 - std::backtrace_rs::backtrace::libunwind::trace::h0fb8082ca5562a61 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5a351c3e8c52 - std::backtrace_rs::backtrace::trace_unsynchronized::hfaa258994374a3cd [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5a351c3e8c52 - std::sys::backtrace::_print_fmt::h11496fe34963a885 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5a351c3e8c52 - ::fmt::hff1a9408d012ee89 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5a351c40c37f - core::fmt::rt::Argument::fmt::hf11195b61445f5d1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5a351c40c37f - core::fmt::write::h2f1fc679f228cc52 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5a351c3d9bf3 - std::io::default_write_fmt::hdd5e6d67566e664d [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5a351c3d9bf3 - std::io::Write::write_fmt::haa2231cbd9aebf95 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5a351c3e8aa2 - std::sys::backtrace::BacktraceLock::print::h28bfdbcac6d3828b [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5a351c3d66bc - std::panicking::default_hook::{{closure}}::h1f968e3a24b0e3b4 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5a351c3d6503 - std::panicking::default_hook::h43da101644971931 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5a351c3d6bfa - std::panicking::panic_with_hook::hb4e916c3e65eccec [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5a351c3e85f6 - std::panicking::panic_handler::{{closure}}::hbff715d0475cf1bd [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x5a351c3e8589 - std::sys::backtrace::__rust_end_short_backtrace::hd6f43484e45a4955 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5a351c3d70ed - __rustc[b29d3319de9a3146]::rust_begin_unwind [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5a351c414a10 - core::panicking::panic_fmt::h5f8d281875be5ff1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5a351c41463c - core::panicking::panic::h7985379807a7ee96 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panicking.rs:145:5 [INFO] [stderr] 17: 0x5a351c0424e4 - build_script_build::build_own_htslib::h4c52eb73fb026de4 [INFO] [stderr] 18: 0x5a351c042b21 - build_script_build::main::h9fec1e556ceab9fb [INFO] [stderr] 19: 0x5a351c041093 - core::ops::function::FnOnce::call_once::heaa3417b12a64d70 [INFO] [stderr] 20: 0x5a351c040d06 - std::sys::backtrace::__rust_begin_short_backtrace::h5a209661681791e7 [INFO] [stderr] 21: 0x5a351c040e19 - std::rt::lang_start::{{closure}}::h8383a175d71deeaf [INFO] [stderr] 22: 0x5a351c3e9260 - core::ops::function::impls:: for &F>::call_once::h32dc2b2f49a48277 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 23: 0x5a351c3e9260 - std::panicking::catch_unwind::do_call::h3353546a38525559 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stderr] 24: 0x5a351c3e9260 - std::panicking::catch_unwind::h57fb70202d1ae368 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stderr] 25: 0x5a351c3e9260 - std::panic::catch_unwind::h4b724a52bb5803b4 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x5a351c3e9260 - std::rt::lang_start_internal::{{closure}}::h3724b3072c80532a [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x5a351c3e9260 - std::panicking::catch_unwind::do_call::h4f6e90f858bd1c3f [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stderr] 28: 0x5a351c3e9260 - std::panicking::catch_unwind::h81c085c0d350991c [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stderr] 29: 0x5a351c3e9260 - std::panic::catch_unwind::h289049af1176d82a [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x5a351c3e9260 - std::rt::lang_start_internal::h3c37ebeb799b11e1 [INFO] [stderr] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x5a351c040e01 - std::rt::lang_start::h143839cb4beaecdc [INFO] [stderr] 32: 0x5a351c043c15 - main [INFO] [stderr] 33: 0x7aef6945a1ca - [INFO] [stderr] 34: 0x7aef6945a28b - __libc_start_main [INFO] [stderr] 35: 0x5a351c03f795 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "c48d96d4668c756308d22bd907f3a8e65212a86d863aaae0f307c59a650822fc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c48d96d4668c756308d22bd907f3a8e65212a86d863aaae0f307c59a650822fc", kill_on_drop: false }` [INFO] [stdout] c48d96d4668c756308d22bd907f3a8e65212a86d863aaae0f307c59a650822fc