[INFO] fetching crate gsetl 0.7.1...
[INFO] checking gsetl-0.7.1 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145342-1
[INFO] extracting crate gsetl 0.7.1 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate gsetl 0.7.1
[INFO] finished tweaking crates.io crate gsetl 0.7.1
[INFO] tweaked toml for crates.io crate gsetl 0.7.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gsetl 0.7.1 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate gsetl 0.7.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.4
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 965fa23d50ab7d4f8655c8c6d552b88b5e25ad3d98e84000746eece0e2a36878
[INFO] running `Command { std: "docker" "start" "-a" "965fa23d50ab7d4f8655c8c6d552b88b5e25ad3d98e84000746eece0e2a36878", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "965fa23d50ab7d4f8655c8c6d552b88b5e25ad3d98e84000746eece0e2a36878", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "965fa23d50ab7d4f8655c8c6d552b88b5e25ad3d98e84000746eece0e2a36878", kill_on_drop: false }`
[INFO] [stdout] 965fa23d50ab7d4f8655c8c6d552b88b5e25ad3d98e84000746eece0e2a36878
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2800462e7bb023e68cc0dd26c1d82ccad12ae9a52041aedd109f2d25a3c5b127
[INFO] running `Command { std: "docker" "start" "-a" "2800462e7bb023e68cc0dd26c1d82ccad12ae9a52041aedd109f2d25a3c5b127", kill_on_drop: false }`
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[INFO] [stderr]    Compiling enum-map-derive v0.17.0
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[INFO] [stderr]    Compiling polars-lazy v0.46.0
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[INFO] [stderr]     Checking idna_adapter v1.2.0
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[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
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[INFO] [stderr]     Checking gsetl v0.7.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `fmt::Display`
[INFO] [stdout]  --> src/non_aligned_bam_etl/mod.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fmt::Display,
[INFO] [stdout]   |     ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/non_aligned_bam_etl/fact_bam_basic.rs:2:16
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fs::{self, File},
[INFO] [stdout]   |                ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `fmt::Display`
[INFO] [stdout]  --> src/non_aligned_bam_etl/mod.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fmt::Display,
[INFO] [stdout]   |     ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/non_aligned_bam_etl/fact_bam_basic.rs:2:16
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fs::{self, File},
[INFO] [stdout]   |                ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic2` is never used
[INFO] [stdout]   --> src/non_aligned_bam_etl/mod.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 30 | pub fn fact_bam_basic2(bam_file: &str) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:100:4
[INFO] [stdout]     |
[INFO] [stdout] 100 | fn base_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_base_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:110:4
[INFO] [stdout]     |
[INFO] [stdout] 110 | fn base_level_base_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:119:4
[INFO] [stdout]     |
[INFO] [stdout] 119 | fn channel_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `speed` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:128:4
[INFO] [stdout]     |
[INFO] [stdout] 128 | fn speed(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Stat` is never constructed
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:141:8
[INFO] [stdout]     |
[INFO] [stdout] 141 | struct Stat {
[INFO] [stdout]     |        ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:175:12
[INFO] [stdout]     |
[INFO] [stdout] 174 | impl Stat {
[INFO] [stdout]     | --------- associated items in this implementation
[INFO] [stdout] 175 |     pub fn new(rng: StdRng, channel_sample_rate: f64) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 202 |     pub fn update(&mut self, rec: &Record) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 240 |     fn update_base_level_info(&mut self, bases: &[u8], dws: &[f64], ars: &[f64], crs: &[f64]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 284 |     fn update_channel_info(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 306 |     pub fn finish(&mut self) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 321 |     pub fn csv(&self) -> String {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 355 |     pub fn to_histgram_data(&self) -> String {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic_v0` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:388:8
[INFO] [stdout]     |
[INFO] [stdout] 388 | pub fn fact_bam_basic_v0(param: &NonAlignedBamParams, output_dir: &str) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_records_num` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:439:4
[INFO] [stdout]     |
[INFO] [stdout] 439 | fn get_records_num(bam_file: &str, bam_threads: usize) -> usize {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `partition` is never used
[INFO] [stdout]  --> src/utils.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn partition<T: PartialOrd + Copy>(data: &mut [T], pivot_index: usize) -> usize {
[INFO] [stdout]   |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `select_nth` is never used
[INFO] [stdout]   --> src/utils.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn select_nth<T: PartialOrd + Copy>(data: &mut [T], n: usize) -> T {
[INFO] [stdout]    |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `median` is never used
[INFO] [stdout]   --> src/utils.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn median<T: PartialOrd + Copy + Add<Output = T> + Into<f64>>(data: &mut [T]) -> Option<f64> {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record_ext`
[INFO] [stdout]    --> src/non_aligned_bam_etl/fact_bam_basic.rs:133:17
[INFO] [stdout]     |
[INFO] [stdout] 133 |             let record_ext = BamRecordExt::new(&record);
[INFO] [stdout]     |                 ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_ext`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic2` is never used
[INFO] [stdout]   --> src/non_aligned_bam_etl/mod.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 30 | pub fn fact_bam_basic2(bam_file: &str) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:100:4
[INFO] [stdout]     |
[INFO] [stdout] 100 | fn base_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_base_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:110:4
[INFO] [stdout]     |
[INFO] [stdout] 110 | fn base_level_base_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:119:4
[INFO] [stdout]     |
[INFO] [stdout] 119 | fn channel_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `speed` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:128:4
[INFO] [stdout]     |
[INFO] [stdout] 128 | fn speed(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:142:5
[INFO] [stdout]     |
[INFO] [stdout] 141 | struct Stat {
[INFO] [stdout]     |        ---- fields in this struct
[INFO] [stdout] 142 |     rng: StdRng,
[INFO] [stdout]     |     ^^^
[INFO] [stdout] 143 |     channel_sample_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 153 |     cq_mean: f64,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 154 |     all_oe: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 155 |     oe_median: f64,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 156 |     
[INFO] [stdout] 157 |     all_read_length: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 158 |     read_length_median: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 159 |
[INFO] [stdout] 160 |     speed: f64,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout] 161 |
[INFO] [stdout] 162 |     sampled_channel_dw: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 163 |     sampled_channel_ar: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 164 |
[INFO] [stdout] 165 |     sampled_channel_read_length: Vec<usize>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 171 |     channel_cnt: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `Stat` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `update`, `update_channel_info`, `finish`, `csv`, and `to_histgram_data` are never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:202:12
[INFO] [stdout]     |
[INFO] [stdout] 174 | impl Stat {
[INFO] [stdout]     | --------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 202 |     pub fn update(&mut self, rec: &Record) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 284 |     fn update_channel_info(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 306 |     pub fn finish(&mut self) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 321 |     pub fn csv(&self) -> String {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 355 |     pub fn to_histgram_data(&self) -> String {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic_v0` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:388:8
[INFO] [stdout]     |
[INFO] [stdout] 388 | pub fn fact_bam_basic_v0(param: &NonAlignedBamParams, output_dir: &str) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_records_num` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:439:4
[INFO] [stdout]     |
[INFO] [stdout] 439 | fn get_records_num(bam_file: &str, bam_threads: usize) -> usize {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `partition` is never used
[INFO] [stdout]  --> src/utils.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn partition<T: PartialOrd + Copy>(data: &mut [T], pivot_index: usize) -> usize {
[INFO] [stdout]   |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `select_nth` is never used
[INFO] [stdout]   --> src/utils.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn select_nth<T: PartialOrd + Copy>(data: &mut [T], n: usize) -> T {
[INFO] [stdout]    |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `median` is never used
[INFO] [stdout]   --> src/utils.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn median<T: PartialOrd + Copy + Add<Output = T> + Into<f64>>(data: &mut [T]) -> Option<f64> {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7m 29s
[INFO] running `Command { std: "docker" "inspect" "2800462e7bb023e68cc0dd26c1d82ccad12ae9a52041aedd109f2d25a3c5b127", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2800462e7bb023e68cc0dd26c1d82ccad12ae9a52041aedd109f2d25a3c5b127", kill_on_drop: false }`
[INFO] [stdout] 2800462e7bb023e68cc0dd26c1d82ccad12ae9a52041aedd109f2d25a3c5b127