[INFO] fetching crate seqtk-rs 0.2.0... [INFO] testing seqtk-rs-0.2.0 against try#b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b for pr-145330-1 [INFO] extracting crate seqtk-rs 0.2.0 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate seqtk-rs 0.2.0 [INFO] finished tweaking crates.io crate seqtk-rs 0.2.0 [INFO] tweaked toml for crates.io crate seqtk-rs 0.2.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate seqtk-rs 0.2.0 on toolchain b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate seqtk-rs 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 97aef0657ac960b61322f8bcc4dc79b8febc69554d1a67cd9468193089606194 [INFO] running `Command { std: "docker" "start" "-a" "97aef0657ac960b61322f8bcc4dc79b8febc69554d1a67cd9468193089606194", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "97aef0657ac960b61322f8bcc4dc79b8febc69554d1a67cd9468193089606194", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "97aef0657ac960b61322f8bcc4dc79b8febc69554d1a67cd9468193089606194", kill_on_drop: false }` [INFO] [stdout] 97aef0657ac960b61322f8bcc4dc79b8febc69554d1a67cd9468193089606194 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ded2374ed60652bbbf1675e0b0da230b99b7e5d02c0b3faec05dd4fac2da698f [INFO] running `Command { std: "docker" "start" "-a" "ded2374ed60652bbbf1675e0b0da230b99b7e5d02c0b3faec05dd4fac2da698f", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling libc v0.2.173 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling clap_builder v4.5.41 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling seqtk-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 24s [INFO] running `Command { std: "docker" "inspect" "ded2374ed60652bbbf1675e0b0da230b99b7e5d02c0b3faec05dd4fac2da698f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ded2374ed60652bbbf1675e0b0da230b99b7e5d02c0b3faec05dd4fac2da698f", kill_on_drop: false }` [INFO] [stdout] ded2374ed60652bbbf1675e0b0da230b99b7e5d02c0b3faec05dd4fac2da698f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 754a266fdb52026aa7cdd3dc5f08197c0b004cefac10bd1b32b4d9f1121218e4 [INFO] running `Command { std: "docker" "start" "-a" "754a266fdb52026aa7cdd3dc5f08197c0b004cefac10bd1b32b4d9f1121218e4", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling prettyplease v0.2.35 [INFO] [stderr] Compiling easy-cast v0.5.3 [INFO] [stderr] Compiling float-ord v0.3.2 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling average v0.16.0 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling clap_derive v4.5.41 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling equator-macro v0.2.1 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling csscolorparser v0.6.2 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling colorgrad v0.6.2 [INFO] [stderr] Compiling equator v0.2.2 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling clap v4.5.41 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling toml_edit v0.22.27 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling toml v0.8.23 [INFO] [stderr] Compiling diol v0.13.1 [INFO] [stderr] Compiling seqtk-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 01s [INFO] running `Command { std: "docker" "inspect" "754a266fdb52026aa7cdd3dc5f08197c0b004cefac10bd1b32b4d9f1121218e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "754a266fdb52026aa7cdd3dc5f08197c0b004cefac10bd1b32b4d9f1121218e4", kill_on_drop: false }` [INFO] [stdout] 754a266fdb52026aa7cdd3dc5f08197c0b004cefac10bd1b32b4d9f1121218e4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7f65e5b11ba44b69f7f90dc097f74d75b3b99438ffed0fa938dfe706597f6fc2 [INFO] running `Command { std: "docker" "start" "-a" "7f65e5b11ba44b69f7f90dc097f74d75b3b99438ffed0fa938dfe706597f6fc2", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/seqtk_rs-09232257b25d272b) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test dna::tests::test_count_nucleotides ... ok [INFO] [stdout] test bed::tests::test_is_overlapping ... ok [INFO] [stdout] test seq::tests::test_modify_qual ... ok [INFO] [stdout] test seq::tests::test_modify_seq ... ok [INFO] [stdout] test seq::tests::test_add_newlines ... ok [INFO] [stdout] test seq::tests::test_revcomp ... ok [INFO] [stdout] test seq::tests::test_is_filtered ... ok [INFO] [stdout] test dna::tests::test_get_cp_index ... ok [INFO] [stdout] test bed::tests::test_merge_bed ... ok [INFO] [stdout] test trim::tests::test_trim_read ... ok [INFO] [stdout] test stats::tests::test_qp_converter ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests seqtk_rs [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7f65e5b11ba44b69f7f90dc097f74d75b3b99438ffed0fa938dfe706597f6fc2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7f65e5b11ba44b69f7f90dc097f74d75b3b99438ffed0fa938dfe706597f6fc2", kill_on_drop: false }` [INFO] [stdout] 7f65e5b11ba44b69f7f90dc097f74d75b3b99438ffed0fa938dfe706597f6fc2