[INFO] fetching crate rust-bio-tools 0.42.2... [INFO] testing rust-bio-tools-0.42.2 against try#b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b for pr-145330-1 [INFO] extracting crate rust-bio-tools 0.42.2 into /workspace/builds/worker-6-tc2/source [INFO] removed /workspace/builds/worker-6-tc2/source/.cargo/config [INFO] started tweaking crates.io crate rust-bio-tools 0.42.2 [INFO] finished tweaking crates.io crate rust-bio-tools 0.42.2 [INFO] tweaked toml for crates.io crate rust-bio-tools 0.42.2 written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rust-bio-tools 0.42.2 on toolchain b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rust-bio-tools 0.42.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5f2d425149d22901026f6c5b808e374ce78a963f759001f81ed581a466301703 [INFO] running `Command { std: "docker" "start" "-a" "5f2d425149d22901026f6c5b808e374ce78a963f759001f81ed581a466301703", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5f2d425149d22901026f6c5b808e374ce78a963f759001f81ed581a466301703", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f2d425149d22901026f6c5b808e374ce78a963f759001f81ed581a466301703", kill_on_drop: false }` [INFO] [stdout] 5f2d425149d22901026f6c5b808e374ce78a963f759001f81ed581a466301703 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f6229faa16d33ec3babfb59949a6f13bd986c1c7b8a4778f528b80952c1fd634 [INFO] running `Command { std: "docker" "start" "-a" "f6229faa16d33ec3babfb59949a6f13bd986c1c7b8a4778f528b80952c1fd634", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling regex-syntax v0.8.3 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling futures v0.1.31 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling autocfg v0.1.8 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling thiserror v1.0.58 [INFO] [stderr] Compiling parking_lot_core v0.6.3 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling siphasher v0.3.11 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling syn v2.0.58 [INFO] [stderr] Compiling rustix v0.38.32 [INFO] [stderr] Compiling phf_shared v0.11.2 [INFO] [stderr] Compiling parking_lot v0.9.0 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling smallvec v0.6.14 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling prettyplease v0.2.17 [INFO] [stderr] Compiling hashbrown v0.14.3 [INFO] [stderr] Compiling matches v0.1.10 [INFO] [stderr] Compiling jobserver v0.1.28 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling iovec v0.1.4 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling bytes v0.4.12 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling cc v1.0.92 [INFO] [stderr] Compiling net2 v0.2.39 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling lock_api v0.3.4 [INFO] [stderr] Compiling tokio-executor v0.1.10 [INFO] [stderr] Compiling tokio-io v0.1.13 [INFO] [stderr] Compiling rustversion v1.0.15 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling phf_generator v0.11.2 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling tokio-sync v0.1.8 [INFO] [stderr] Compiling mio v0.6.23 [INFO] [stderr] Compiling openssl-src v300.2.3+3.2.1 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling unicase v2.7.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.64.0 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling bindgen v0.65.1 [INFO] [stderr] Compiling serde_json v1.0.115 [INFO] [stderr] Compiling miniz_oxide v0.7.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling tokio-reactor v0.1.12 [INFO] [stderr] Compiling crossbeam-deque v0.7.4 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling phf_codegen v0.11.2 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling http v0.1.21 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling openssl-sys v0.9.102 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling zstd-sys v2.0.10+zstd.1.5.6 [INFO] [stderr] Compiling backtrace v0.3.71 [INFO] [stderr] Compiling curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling num-complex v0.4.5 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling time v0.1.45 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling phf v0.11.2 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling gimli v0.28.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling percent-encoding v1.0.1 [INFO] [stderr] Compiling unicode-xid v0.2.4 [INFO] [stderr] Compiling iana-time-zone v0.1.60 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling unicode-segmentation v1.11.0 [INFO] [stderr] Compiling ucd-trie v0.1.6 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling openssl v0.10.64 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling chrono v0.4.37 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling url v2.5.0 [INFO] [stderr] Compiling tokio-threadpool v0.1.18 [INFO] [stderr] Compiling regex v1.10.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling parse-zoneinfo v0.3.0 [INFO] [stderr] Compiling addr2line v0.21.0 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Compiling tokio-tcp v0.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling tokio-timer v0.2.13 [INFO] [stderr] Compiling tokio-current-thread v0.1.7 [INFO] [stderr] Compiling chrono-tz-build v0.2.1 [INFO] [stderr] Compiling tokio-buf v0.1.1 [INFO] [stderr] Compiling string v0.2.1 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling hyper v0.12.36 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling lock_api v0.4.11 [INFO] [stderr] Compiling object v0.32.2 [INFO] [stderr] Compiling bstr v1.9.1 [INFO] [stderr] Compiling unic-common v0.9.0 [INFO] [stderr] Compiling native-tls v0.2.11 [INFO] [stderr] Compiling unic-char-range v0.9.0 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling parking_lot_core v0.9.9 [INFO] [stderr] Compiling rustc-demangle v0.1.23 [INFO] [stderr] Compiling want v0.2.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling http-body v0.1.0 [INFO] [stderr] Compiling unic-char-property v0.9.0 [INFO] [stderr] Compiling unic-ucd-version v0.9.0 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling thiserror-impl v1.0.58 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling globset v0.4.14 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling h2 v0.1.26 [INFO] [stderr] Compiling mime_guess v2.0.4 [INFO] [stderr] Compiling tokio v0.1.22 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling pest v2.7.9 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling futures-cpupool v0.1.8 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling chrono-tz v0.8.6 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling GSL-sys v3.0.0 [INFO] [stderr] Compiling openssl-probe v0.1.5 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling anyhow v1.0.82 [INFO] [stderr] Compiling publicsuffix v1.5.6 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling ignore v0.4.22 [INFO] [stderr] Compiling unic-ucd-segment v0.9.0 [INFO] [stderr] Compiling pest_meta v2.7.9 [INFO] [stderr] Compiling cookie v0.12.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling try_from v0.3.2 [INFO] [stderr] Compiling deunicode v1.4.3 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling dtoa v0.4.8 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling slug v0.1.5 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling libxlsxwriter-sys v1.1.5 [INFO] [stderr] Compiling globwalk v0.8.1 [INFO] [stderr] Compiling pest_generator v2.7.9 [INFO] [stderr] Compiling uuid v0.7.4 [INFO] [stderr] Compiling librocksdb-sys v0.8.3+7.4.4 [INFO] [stderr] Compiling unic-segment v0.9.0 [INFO] [stderr] Compiling parking_lot v0.12.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling pest_derive v2.7.9 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling number_prefix v0.2.8 [INFO] [stderr] Compiling humansize v2.1.3 [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--version-script=/tmp/rustcbifZ7T/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustcbifZ7T/symbols.o" "<1 object files omitted>" "/tmp/rustcbifZ7T/rmeta.o" "-Wl,--as-needed" "-Wl,-Bdynamic" "-lgsl" "-lgslcblas" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibc-c64eddf1d3f0dc2a.rlib" "-Wl,-Bdynamic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-9fbdd90241d2d923.so" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-*.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcbifZ7T/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libgsl_sys-5ecbdcd4308e50e9.so" "-shared" "-Wl,-soname=libgsl_sys-5ecbdcd4308e50e9.so" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: unable to find library -lgsl [INFO] [stdout] rust-lld: error: unable to find library -lgslcblas [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] error: could not compile `GSL-sys` (lib) due to 1 previous error [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "f6229faa16d33ec3babfb59949a6f13bd986c1c7b8a4778f528b80952c1fd634", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6229faa16d33ec3babfb59949a6f13bd986c1c7b8a4778f528b80952c1fd634", kill_on_drop: false }` [INFO] [stdout] f6229faa16d33ec3babfb59949a6f13bd986c1c7b8a4778f528b80952c1fd634