[INFO] fetching crate hpo 0.12.0...
[INFO] testing hpo-0.12.0 against try#b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b for pr-145330-1
[INFO] extracting crate hpo 0.12.0 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate hpo 0.12.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate hpo 0.12.0
[INFO] tweaked toml for crates.io crate hpo 0.12.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate hpo 0.12.0 on toolchain b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hpo 0.12.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4e5c3acd249bb00fd9385d92ff40938b866145eff135e36ccf050b66d68a377f
[INFO] running `Command { std: "docker" "start" "-a" "4e5c3acd249bb00fd9385d92ff40938b866145eff135e36ccf050b66d68a377f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4e5c3acd249bb00fd9385d92ff40938b866145eff135e36ccf050b66d68a377f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4e5c3acd249bb00fd9385d92ff40938b866145eff135e36ccf050b66d68a377f", kill_on_drop: false }`
[INFO] [stdout] 4e5c3acd249bb00fd9385d92ff40938b866145eff135e36ccf050b66d68a377f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] daa84bb082d699d3453a55254411b546e8b369f7c16845ac4793b34cdb4a9c44
[INFO] running `Command { std: "docker" "start" "-a" "daa84bb082d699d3453a55254411b546e8b369f7c16845ac4793b34cdb4a9c44", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.98
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.76s
[INFO] running `Command { std: "docker" "inspect" "daa84bb082d699d3453a55254411b546e8b369f7c16845ac4793b34cdb4a9c44", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "daa84bb082d699d3453a55254411b546e8b369f7c16845ac4793b34cdb4a9c44", kill_on_drop: false }`
[INFO] [stdout] daa84bb082d699d3453a55254411b546e8b369f7c16845ac4793b34cdb4a9c44
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 563ad72c875dd570b8c8ae44e5f65d104a2d41ba5c2802377d96042e80616bd3
[INFO] running `Command { std: "docker" "start" "-a" "563ad72c875dd570b8c8ae44e5f65d104a2d41ba5c2802377d96042e80616bd3", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling serde_json v1.0.139
[INFO] [stderr]    Compiling os_str_bytes v6.6.1
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling time-macros v0.2.19
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling serde_derive v1.0.218
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling time v0.3.37
[INFO] [stderr]    Compiling simple_logger v4.3.3
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.4.0
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 23.68s
[INFO] running `Command { std: "docker" "inspect" "563ad72c875dd570b8c8ae44e5f65d104a2d41ba5c2802377d96042e80616bd3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "563ad72c875dd570b8c8ae44e5f65d104a2d41ba5c2802377d96042e80616bd3", kill_on_drop: false }`
[INFO] [stdout] 563ad72c875dd570b8c8ae44e5f65d104a2d41ba5c2802377d96042e80616bd3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+b6ae10aa7319b7ebb6c7b3331dd71a9d6c9c5b4b" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3bd76cbac489972be865c25106d98013fc31a22cf6c1e7383f0b7b76bf8e1251
[INFO] running `Command { std: "docker" "start" "-a" "3bd76cbac489972be865c25106d98013fc31a22cf6c1e7383f0b7b76bf8e1251", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hpo-c1aa8057bd8ac04e)
[INFO] [stdout] 
[INFO] [stdout] running 84 tests
[INFO] [stdout] test annotations::gene::test::gene_to_and_from_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_to_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_long_name ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_non_utf8_name ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_and_from_binary ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_binary ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_long_name ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_non_utf8_name ... ok
[INFO] [stdout] test matrix::tests::test_col_iterator_sums ... ok
[INFO] [stdout] test matrix::tests::test_column_index_iterator ... ok
[INFO] [stdout] test matrix::tests::test_column_iterator ... ok
[INFO] [stdout] test matrix::tests::test_empty_row_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_index_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_wrong_length ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator_sums ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_wrong_length ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_omim ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_hpo_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_fails ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_input ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_omim_id ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_not ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_comment ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_orpha_not ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_orpha ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hashtag ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_ncbi_gene ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hpo_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_empty_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_id ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_fcache ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_build ... ok
[INFO] [stdout] test stats::test::iterate_counts ... ok
[INFO] [stdout] test stats::test::iterate_frequencies ... ok
[INFO] [stdout] test term::group::tests::test_bitand ... ok
[INFO] [stdout] test term::group::tests::test_bitand_2 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set1 ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_cdf ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_max ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set2 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set3 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set4 ... ok
[INFO] [stdout] test term::group::tests::test_hpogroup_iter ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::min ... ok
[INFO] [stdout] test ontology::test::add_terms_from_bytes ... ok
[INFO] [stdout] test ontology::test::diseases_by_name ... ok
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/hpo-c1aa8057bd8ac04e` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "3bd76cbac489972be865c25106d98013fc31a22cf6c1e7383f0b7b76bf8e1251", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3bd76cbac489972be865c25106d98013fc31a22cf6c1e7383f0b7b76bf8e1251", kill_on_drop: false }`
[INFO] [stdout] 3bd76cbac489972be865c25106d98013fc31a22cf6c1e7383f0b7b76bf8e1251