[INFO] fetching crate vcfverifier 0.1.1...
[INFO] testing vcfverifier-0.1.1 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1
[INFO] extracting crate vcfverifier 0.1.1 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate vcfverifier 0.1.1
[INFO] finished tweaking crates.io crate vcfverifier 0.1.1
[INFO] tweaked toml for crates.io crate vcfverifier 0.1.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate vcfverifier 0.1.1 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate vcfverifier 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unicode-ident v1.0.2
[INFO] [stderr]   Downloaded proc-macro2 v1.0.42
[INFO] [stderr]   Downloaded os_str_bytes v6.2.0
[INFO] [stderr]   Downloaded once_cell v1.13.0
[INFO] [stderr]   Downloaded quote v1.0.20
[INFO] [stderr]   Downloaded clap_derive v3.2.15
[INFO] [stderr]   Downloaded openssl-sys v0.9.75
[INFO] [stderr]   Downloaded miniz_oxide v0.5.3
[INFO] [stderr]   Downloaded jobserver v0.1.24
[INFO] [stderr]   Downloaded unicode-normalization v0.1.21
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded memmap2 v0.3.1
[INFO] [stderr]   Downloaded strum_macros v0.24.2
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded faimm v0.3.0
[INFO] [stderr]   Downloaded clap v3.2.15
[INFO] [stderr]   Downloaded regex v1.6.0
[INFO] [stderr]   Downloaded syn v1.0.98
[INFO] [stderr]   Downloaded rustversion v1.0.8
[INFO] [stderr]   Downloaded regex-syntax v0.6.27
[INFO] [stderr]   Downloaded lzma-sys v0.1.19
[INFO] [stderr]   Downloaded curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]   Downloaded hts-sys v2.0.2
[INFO] [stderr]   Downloaded openssl-src v111.22.0+1.1.1q
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3862257dfb57c61418679dfbedf3a5260310532c078248e0525cb064e7cc539a
[INFO] running `Command { std: "docker" "start" "-a" "3862257dfb57c61418679dfbedf3a5260310532c078248e0525cb064e7cc539a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3862257dfb57c61418679dfbedf3a5260310532c078248e0525cb064e7cc539a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3862257dfb57c61418679dfbedf3a5260310532c078248e0525cb064e7cc539a", kill_on_drop: false }`
[INFO] [stdout] 3862257dfb57c61418679dfbedf3a5260310532c078248e0525cb064e7cc539a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ed460941be849679262122ea32364da787ec130518da9c8c758cbf1df109e68c
[INFO] running `Command { std: "docker" "start" "-a" "ed460941be849679262122ea32364da787ec130518da9c8c758cbf1df109e68c", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling proc-macro2 v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.2
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustversion v1.0.8
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]    Compiling regex-syntax v0.6.27
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling unicode-normalization v0.1.21
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling unicode-bidi v0.3.8
[INFO] [stderr]    Compiling os_str_bytes v6.2.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling miniz_oxide v0.5.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling once_cell v1.13.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling textwrap v0.15.0
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling memmap2 v0.3.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling flate2 v1.0.24
[INFO] [stderr]    Compiling faimm v0.3.0
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling openssl-src v111.22.0+1.1.1q
[INFO] [stderr]    Compiling lzma-sys v0.1.19
[INFO] [stderr]    Compiling curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling openssl-sys v0.9.75
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.2
[INFO] [stderr]    Compiling clap_derive v3.2.15
[INFO] [stderr]    Compiling thiserror v1.0.31
[INFO] [stderr]    Compiling clap v3.2.15
[INFO] [stderr]    Compiling bio-types v0.13.0
[INFO] [stderr]    Compiling rust-htslib v0.39.5
[INFO] [stderr]    Compiling vcfverifier v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&str` instead of cloning the inner type
[INFO] [stdout]   --> src/main.rs:65:18
[INFO] [stdout]    |
[INFO] [stdout] 65 |           .unwrap()
[INFO] [stdout]    |  __________________^
[INFO] [stdout] 66 | |         .clone();
[INFO] [stdout]    | |________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 09s
[INFO] running `Command { std: "docker" "inspect" "ed460941be849679262122ea32364da787ec130518da9c8c758cbf1df109e68c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed460941be849679262122ea32364da787ec130518da9c8c758cbf1df109e68c", kill_on_drop: false }`
[INFO] [stdout] ed460941be849679262122ea32364da787ec130518da9c8c758cbf1df109e68c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4bad5ba41c6d1206c24d73825f36d0ad936c471ace76b8f8d3b6dfc498354ec9
[INFO] running `Command { std: "docker" "start" "-a" "4bad5ba41c6d1206c24d73825f36d0ad936c471ace76b8f8d3b6dfc498354ec9", kill_on_drop: false }`
[INFO] [stderr]    Compiling vcfverifier v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&str` instead of cloning the inner type
[INFO] [stdout]   --> src/main.rs:65:18
[INFO] [stdout]    |
[INFO] [stdout] 65 |           .unwrap()
[INFO] [stdout]    |  __________________^
[INFO] [stdout] 66 | |         .clone();
[INFO] [stdout]    | |________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.03s
[INFO] running `Command { std: "docker" "inspect" "4bad5ba41c6d1206c24d73825f36d0ad936c471ace76b8f8d3b6dfc498354ec9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4bad5ba41c6d1206c24d73825f36d0ad936c471ace76b8f8d3b6dfc498354ec9", kill_on_drop: false }`
[INFO] [stdout] 4bad5ba41c6d1206c24d73825f36d0ad936c471ace76b8f8d3b6dfc498354ec9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 27c3237ab7ecfd647f41460d2fa0e6740fe1b1b26ad5b46097f87996dbf1911b
[INFO] running `Command { std: "docker" "start" "-a" "27c3237ab7ecfd647f41460d2fa0e6740fe1b1b26ad5b46097f87996dbf1911b", kill_on_drop: false }`
[INFO] [stderr] warning: using `.clone()` on a double reference, which returns `&str` instead of cloning the inner type
[INFO] [stderr]   --> src/main.rs:65:18
[INFO] [stderr]    |
[INFO] [stderr] 65 |           .unwrap()
[INFO] [stderr]    |  __________________^
[INFO] [stderr] 66 | |         .clone();
[INFO] [stderr]    | |________________^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `vcfverifier` (bin "vcfverifier" test) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/vcfverifier-fd99b1f81c6aff08)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::gzip_vcf ... ok
[INFO] [stdout] test tests::plaintext_vcf ... ok
[INFO] [stdout] test tests::bgzip_vcf ... ok
[INFO] [stdout] test tests::missing_fasta - should panic ... ok
[INFO] [stdout] test tests::missing_vcf - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "27c3237ab7ecfd647f41460d2fa0e6740fe1b1b26ad5b46097f87996dbf1911b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "27c3237ab7ecfd647f41460d2fa0e6740fe1b1b26ad5b46097f87996dbf1911b", kill_on_drop: false }`
[INFO] [stdout] 27c3237ab7ecfd647f41460d2fa0e6740fe1b1b26ad5b46097f87996dbf1911b