[INFO] fetching crate pombase-gocam 0.96.0... [INFO] testing pombase-gocam-0.96.0 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1 [INFO] extracting crate pombase-gocam 0.96.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate pombase-gocam 0.96.0 [INFO] finished tweaking crates.io crate pombase-gocam 0.96.0 [INFO] tweaked toml for crates.io crate pombase-gocam 0.96.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate pombase-gocam 0.96.0 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate pombase-gocam 0.96.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a735e5912cfbf296de9f19ef0410116d65d5a9f6d44d303214436b9a6a89a332 [INFO] running `Command { std: "docker" "start" "-a" "a735e5912cfbf296de9f19ef0410116d65d5a9f6d44d303214436b9a6a89a332", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a735e5912cfbf296de9f19ef0410116d65d5a9f6d44d303214436b9a6a89a332", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a735e5912cfbf296de9f19ef0410116d65d5a9f6d44d303214436b9a6a89a332", kill_on_drop: false }` [INFO] [stdout] a735e5912cfbf296de9f19ef0410116d65d5a9f6d44d303214436b9a6a89a332 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ab18194af59d080f81b791ff5d010954a0fbffdf9b80d840e43168d490659a70 [INFO] running `Command { std: "docker" "start" "-a" "ab18194af59d080f81b791ff5d010954a0fbffdf9b80d840e43168d490659a70", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling pombase-gocam v0.96.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 18.73s [INFO] running `Command { std: "docker" "inspect" "ab18194af59d080f81b791ff5d010954a0fbffdf9b80d840e43168d490659a70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab18194af59d080f81b791ff5d010954a0fbffdf9b80d840e43168d490659a70", kill_on_drop: false }` [INFO] [stdout] ab18194af59d080f81b791ff5d010954a0fbffdf9b80d840e43168d490659a70 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f53a655e7e0323c62d596ce82bb9f3fc65b64d82f968b42ad2e27059dca48b45 [INFO] running `Command { std: "docker" "start" "-a" "f53a655e7e0323c62d596ce82bb9f3fc65b64d82f968b42ad2e27059dca48b45", kill_on_drop: false }` [INFO] [stderr] Compiling pombase-gocam v0.96.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.67s [INFO] running `Command { std: "docker" "inspect" "f53a655e7e0323c62d596ce82bb9f3fc65b64d82f968b42ad2e27059dca48b45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f53a655e7e0323c62d596ce82bb9f3fc65b64d82f968b42ad2e27059dca48b45", kill_on_drop: false }` [INFO] [stdout] f53a655e7e0323c62d596ce82bb9f3fc65b64d82f968b42ad2e27059dca48b45 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 90060f5ad1e48102a7f7b5c546e79aa21f784573b746e365b6ac4f8eedfd1b36 [INFO] running `Command { std: "docker" "start" "-a" "90060f5ad1e48102a7f7b5c546e79aa21f784573b746e365b6ac4f8eedfd1b36", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pombase_gocam-2276df8806dc735a) [INFO] [stdout] [INFO] [stdout] running 21 tests [INFO] [stdout] test graph::tests::parse_raw_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test ... ok [INFO] [stdout] test gocam_py::tests::parse_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test_with_complement ... ok [INFO] [stdout] test tests::model_activity_enabled_by_test ... ok [INFO] [stdout] test tests::parse_test ... ok [INFO] [stdout] test tests::remove_chemicals_inputs_outputs_only_test ... ok [INFO] [stdout] test tests::location_of_chemical ... ok [INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok [INFO] [stdout] test tests::retain_enabling_genes_test ... ok [INFO] [stdout] test tests::merge_test_three_models ... ok [INFO] [stdout] test tests::retain_largest_subgraph_test ... ok [INFO] [stdout] test tests::test_genes_enabling_activities ... ok [INFO] [stdout] test tests::merge_test ... ok [INFO] [stdout] test tests::remove_chemicals_test ... ok [INFO] [stdout] test tests::test_genes_in_model ... ok [INFO] [stdout] test tests::test_modified_genes_in_model ... ok [INFO] [stdout] test tests::test_node_rel_direction ... ok [INFO] [stdout] test tests::find_overlaps_test ... ok [INFO] [stdout] test tests::merge_test_mss51 ... ok [INFO] [stdout] test tests::overlap_test ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 21 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.38s [INFO] [stdout] [INFO] [stderr] Doc-tests pombase_gocam [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test src/lib.rs - (line 17) ... ok [INFO] [stdout] test src/raw.rs - raw::GoCamRawModel (line 289) ... ok [INFO] [stdout] test src/raw.rs - raw::gocam_parse_raw (line 445) ... ok [INFO] [stdout] test src/raw.rs - raw (line 8) ... ok [INFO] [stdout] test src/lib.rs - GoCamModel::new (line 221) ... ok [INFO] [stdout] test src/lib.rs - parse_gocam_model (line 2143) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "90060f5ad1e48102a7f7b5c546e79aa21f784573b746e365b6ac4f8eedfd1b36", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90060f5ad1e48102a7f7b5c546e79aa21f784573b746e365b6ac4f8eedfd1b36", kill_on_drop: false }` [INFO] [stdout] 90060f5ad1e48102a7f7b5c546e79aa21f784573b746e365b6ac4f8eedfd1b36