[INFO] fetching crate phenopackets 0.2.2-post1... [INFO] testing phenopackets-0.2.2-post1 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1 [INFO] extracting crate phenopackets 0.2.2-post1 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate phenopackets 0.2.2-post1 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate phenopackets 0.2.2-post1 [INFO] tweaked toml for crates.io crate phenopackets 0.2.2-post1 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate phenopackets 0.2.2-post1 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate phenopackets 0.2.2-post1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded prost-types v0.13.5 [INFO] [stderr] Downloaded tempfile v3.19.0 [INFO] [stderr] Downloaded prost-build v0.13.5 [INFO] [stderr] Downloaded rustix v1.0.2 [INFO] [stderr] Downloaded petgraph v0.7.1 [INFO] [stderr] Downloaded linux-raw-sys v0.9.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2252085d04eb769280570ae16ecbba82346ccf7612a99ec2f6c718ece225c0c6 [INFO] running `Command { std: "docker" "start" "-a" "2252085d04eb769280570ae16ecbba82346ccf7612a99ec2f6c718ece225c0c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2252085d04eb769280570ae16ecbba82346ccf7612a99ec2f6c718ece225c0c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2252085d04eb769280570ae16ecbba82346ccf7612a99ec2f6c718ece225c0c6", kill_on_drop: false }` [INFO] [stdout] 2252085d04eb769280570ae16ecbba82346ccf7612a99ec2f6c718ece225c0c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7e7a00505a49e1dd13893e4d307db856d5d3dda66c2aacff741a8a9ec862372c [INFO] running `Command { std: "docker" "start" "-a" "7e7a00505a49e1dd13893e4d307db856d5d3dda66c2aacff741a8a9ec862372c", kill_on_drop: false }` [INFO] [stderr] Compiling anyhow v1.0.97 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling bytes v1.10.1 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling prost-derive v0.13.5 [INFO] [stderr] Compiling prost v0.13.5 [INFO] [stderr] Compiling prost-types v0.13.5 [INFO] [stderr] Compiling phenopackets v0.2.2-post1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.27s [INFO] running `Command { std: "docker" "inspect" "7e7a00505a49e1dd13893e4d307db856d5d3dda66c2aacff741a8a9ec862372c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e7a00505a49e1dd13893e4d307db856d5d3dda66c2aacff741a8a9ec862372c", kill_on_drop: false }` [INFO] [stdout] 7e7a00505a49e1dd13893e4d307db856d5d3dda66c2aacff741a8a9ec862372c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 87d7361abfec2c7419676e417c71c16868081533474b2925e570a88b02bedf70 [INFO] running `Command { std: "docker" "start" "-a" "87d7361abfec2c7419676e417c71c16868081533474b2925e570a88b02bedf70", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling phenopackets v0.2.2-post1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 8.09s [INFO] running `Command { std: "docker" "inspect" "87d7361abfec2c7419676e417c71c16868081533474b2925e570a88b02bedf70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "87d7361abfec2c7419676e417c71c16868081533474b2925e570a88b02bedf70", kill_on_drop: false }` [INFO] [stdout] 87d7361abfec2c7419676e417c71c16868081533474b2925e570a88b02bedf70 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0cca1244d252b3a36e9a99a67d1c3223fc33106e88b971fc3c40c7a89f2d9b8b [INFO] running `Command { std: "docker" "start" "-a" "0cca1244d252b3a36e9a99a67d1c3223fc33106e88b971fc3c40c7a89f2d9b8b", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phenopackets-41efd32a40e9f7ad) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test tests::api::top_level_elements_are_partial_eq ... ok [INFO] [stdout] test tests::api::top_level_elements_are_debug ... ok [INFO] [stdout] test tests::api::top_level_elements_are_send_and_sync ... ok [INFO] [stdout] test tests::api::top_level_elements_can_be_cloned ... ok [INFO] [stdout] test tests::protobuf::v1::decode_cohort ... ok [INFO] [stdout] test tests::protobuf::v1::decode_phenopacket ... ok [INFO] [stdout] test tests::protobuf::v2::decode_phenopacket ... ok [INFO] [stdout] test tests::protobuf::v2::decode_cohort ... ok [INFO] [stdout] test tests::protobuf::v2::decode_family ... ok [INFO] [stdout] test tests::protobuf::v1::decode_family ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/basic.rs (/opt/rustwide/target/debug/deps/basic-483f96b4f878fe06) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test ontology_class ... ok [INFO] [stdout] test phenotypic_feature ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests phenopackets [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/lib.rs - (line 13) ... ok [INFO] [stdout] test src/lib.rs - (line 47) ... ok [INFO] [stdout] test src/lib.rs - (line 65) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.43s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0cca1244d252b3a36e9a99a67d1c3223fc33106e88b971fc3c40c7a89f2d9b8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0cca1244d252b3a36e9a99a67d1c3223fc33106e88b971fc3c40c7a89f2d9b8b", kill_on_drop: false }` [INFO] [stdout] 0cca1244d252b3a36e9a99a67d1c3223fc33106e88b971fc3c40c7a89f2d9b8b