[INFO] fetching crate omics-tools 0.1.0...
[INFO] testing omics-tools-0.1.0 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1
[INFO] extracting crate omics-tools 0.1.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate omics-tools 0.1.0
[INFO] finished tweaking crates.io crate omics-tools 0.1.0
[INFO] tweaked toml for crates.io crate omics-tools 0.1.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate omics-tools 0.1.0 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate omics-tools 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded termion v1.5.5
[INFO] [stderr]   Downloaded stderrlog v0.4.3
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[INFO] [stderr]   Downloaded url v2.1.1
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[INFO] [stderr]   Downloaded serde_derive v1.0.116
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[INFO] [stderr]   Downloaded num-integer v0.1.43
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[INFO] [stderr]   Downloaded rustc_version v0.1.7
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[INFO] [stderr]   Downloaded redox_termios v0.1.1
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[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
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[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]   Downloaded openssl-src v111.10.2+1.1.1g
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 74cb6e3069915150d6623696dcaeff733c6f5ddca917d86d7e3c86a5063f3d54
[INFO] running `Command { std: "docker" "start" "-a" "74cb6e3069915150d6623696dcaeff733c6f5ddca917d86d7e3c86a5063f3d54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "74cb6e3069915150d6623696dcaeff733c6f5ddca917d86d7e3c86a5063f3d54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "74cb6e3069915150d6623696dcaeff733c6f5ddca917d86d7e3c86a5063f3d54", kill_on_drop: false }`
[INFO] [stdout] 74cb6e3069915150d6623696dcaeff733c6f5ddca917d86d7e3c86a5063f3d54
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 74d20c0ec0a9a4d6850e2697ec7e0676ff0eba776d781aa54fdd5fc69c3ad238
[INFO] running `Command { std: "docker" "start" "-a" "74d20c0ec0a9a4d6850e2697ec7e0676ff0eba776d781aa54fdd5fc69c3ad238", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling syn v1.0.40
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling tinyvec v0.3.4
[INFO] [stderr]    Compiling rayon-core v1.8.0
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.13
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling either v1.6.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling chrono v0.4.15
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling structopt-derive v0.4.10
[INFO] [stderr]    Compiling thiserror v1.0.20
[INFO] [stderr]    Compiling structopt v0.3.17
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling rust-htslib v0.32.0
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Opt` is never constructed
[INFO] [stdout]   --> src/bin/bam-util.rs:14:8
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 42s
[INFO] running `Command { std: "docker" "inspect" "74d20c0ec0a9a4d6850e2697ec7e0676ff0eba776d781aa54fdd5fc69c3ad238", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "74d20c0ec0a9a4d6850e2697ec7e0676ff0eba776d781aa54fdd5fc69c3ad238", kill_on_drop: false }`
[INFO] [stdout] 74d20c0ec0a9a4d6850e2697ec7e0676ff0eba776d781aa54fdd5fc69c3ad238
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5870b6a67796a45d59639e34c0448c0107960905820734b3e402dda4559d0086
[INFO] running `Command { std: "docker" "start" "-a" "5870b6a67796a45d59639e34c0448c0107960905820734b3e402dda4559d0086", kill_on_drop: false }`
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Opt` is never constructed
[INFO] [stdout]   --> src/bin/bam-util.rs:14:8
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.57s
[INFO] running `Command { std: "docker" "inspect" "5870b6a67796a45d59639e34c0448c0107960905820734b3e402dda4559d0086", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5870b6a67796a45d59639e34c0448c0107960905820734b3e402dda4559d0086", kill_on_drop: false }`
[INFO] [stdout] 5870b6a67796a45d59639e34c0448c0107960905820734b3e402dda4559d0086
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0c1a57d84f2e2c9ded321fd24bdf9eb787f1cfa4fbaa57c71833d2539861a471
[INFO] running `Command { std: "docker" "start" "-a" "0c1a57d84f2e2c9ded321fd24bdf9eb787f1cfa4fbaa57c71833d2539861a471", kill_on_drop: false }`
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> src/bin/bam-util.rs:1:1
[INFO] [stderr]   |
[INFO] [stderr] 1 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: struct `Opt` is never constructed
[INFO] [stderr]   --> src/bin/bam-util.rs:14:8
[INFO] [stderr]    |
[INFO] [stderr] 14 | struct Opt {
[INFO] [stderr]    |        ^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `omics-tools` (bin "bam-util" test) generated 2 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_tools-cdfcfc16c4f6914f)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bam-util.rs (/opt/rustwide/target/debug/deps/bam_util-c2285e0fae220284)
[INFO] [stderr]    Doc-tests omics_tools
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope
[INFO] [stdout]  --> src/bam/cigar.rs:22:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | let removed = remove_whitespace("  each(S) && all(M)");
[INFO] [stdout]   |               ^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 + use omics_tools::bam::cigar::remove_whitespace;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "0c1a57d84f2e2c9ded321fd24bdf9eb787f1cfa4fbaa57c71833d2539861a471", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c1a57d84f2e2c9ded321fd24bdf9eb787f1cfa4fbaa57c71833d2539861a471", kill_on_drop: false }`
[INFO] [stdout] 0c1a57d84f2e2c9ded321fd24bdf9eb787f1cfa4fbaa57c71833d2539861a471