[INFO] fetching crate ncbi-vdb-sys 0.1.6...
[INFO] testing ncbi-vdb-sys-0.1.6 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1
[INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-3-tc1/source
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a9577bfb6304457ef463210f6c4fa2e992e1dc8a58af37ddadea44e71494079f
[INFO] running `Command { std: "docker" "start" "-a" "a9577bfb6304457ef463210f6c4fa2e992e1dc8a58af37ddadea44e71494079f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a9577bfb6304457ef463210f6c4fa2e992e1dc8a58af37ddadea44e71494079f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a9577bfb6304457ef463210f6c4fa2e992e1dc8a58af37ddadea44e71494079f", kill_on_drop: false }`
[INFO] [stdout] a9577bfb6304457ef463210f6c4fa2e992e1dc8a58af37ddadea44e71494079f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 205feb49c00ccb69917d5866e0ad68c3f2de80d41d31a9c784157b25d1ebb51c
[INFO] running `Command { std: "docker" "start" "-a" "205feb49c00ccb69917d5866e0ad68c3f2de80d41d31a9c784157b25d1ebb51c", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-eeeaaaa7b257f0af/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/libs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env
[INFO] [stderr]   Configuring NCBI-VDB package
[INFO] [stderr]   checking system type... Linux
[INFO] [stderr]   checking OS distributor... 
[INFO] [stderr]   checking machine architecture... x86_64
[INFO] [stderr]   checking for supported architecture... x86_64 (64 bits) is supported
[INFO] [stderr]   checking for supported OS... Linux (linux) is supported
[INFO] [stderr]   checking for supported tool chain... gcc tool chain is supported
[INFO] [stderr]   checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
[INFO] [stderr]   checking for g++... yes
[INFO] [stderr]   checking for Python 3... /usr/bin/python3
[INFO] [stderr]   checking whether g++ accepts -static-libstdc++... no
[INFO] [stderr]   checking for cmake... yes
[INFO] [stderr]   checking for fuse library... no
[INFO] [stderr]   checking for hdf5 library... no
[INFO] [stderr]   checking for magic library... no
[INFO] [stderr]   checking for xml2 library... no
[INFO] [stderr] 
[INFO] [stderr]   configure: creating 'build/ld.linux.exe_cmd.sh'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (244) panicked at build.rs:37:13:
[INFO] [stderr]   Configure failed
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5e01757edab2 - std::backtrace_rs::backtrace::libunwind::trace::h0fb8082ca5562a61
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5e01757edab2 - std::backtrace_rs::backtrace::trace_unsynchronized::hfaa258994374a3cd
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5e01757edab2 - std::sys::backtrace::_print_fmt::h11496fe34963a885
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5e01757edab2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hff1a9408d012ee89
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5e017580ce6f - core::fmt::rt::Argument::fmt::hf11195b61445f5d1
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x5e017580ce6f - core::fmt::write::h2f1fc679f228cc52
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/mod.rs:1468:25
[INFO] [stderr]      6:     0x5e01757df693 - std::io::default_write_fmt::hdd5e6d67566e664d
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5e01757df693 - std::io::Write::write_fmt::haa2231cbd9aebf95
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x5e01757ed902 - std::sys::backtrace::BacktraceLock::print::h28bfdbcac6d3828b
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5e01757dcc1c - std::panicking::default_hook::{{closure}}::h1f968e3a24b0e3b4
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x5e01757dca63 - std::panicking::default_hook::h43da101644971931
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x5e01757dd15a - std::panicking::panic_with_hook::hb4e916c3e65eccec
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x5e01757ed456 - std::panicking::panic_handler::{{closure}}::hbff715d0475cf1bd
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:700:13
[INFO] [stderr]     13:     0x5e01757ed3e9 - std::sys::backtrace::__rust_end_short_backtrace::hd6f43484e45a4955
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x5e01757dd54d - __rustc[b29d3319de9a3146]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x5e017580f0c0 - core::panicking::panic_fmt::h5f8d281875be5ff1
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x5e01757aae8b - build_script_build::main::hc85b3be41ebeb3f9
[INFO] [stderr]     17:     0x5e01757a9923 - core::ops::function::FnOnce::call_once::he69f2ec2a93ea9eb
[INFO] [stderr]     18:     0x5e01757aa486 - std::sys::backtrace::__rust_begin_short_backtrace::h7a174030d0d3c21b
[INFO] [stderr]     19:     0x5e01757aa469 - std::rt::lang_start::{{closure}}::he3e900069c136ca4
[INFO] [stderr]     20:     0x5e01757ee080 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h32dc2b2f49a48277
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:290:21
[INFO] [stderr]     21:     0x5e01757ee080 - std::panicking::catch_unwind::do_call::h3353546a38525559
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40
[INFO] [stderr]     22:     0x5e01757ee080 - std::panicking::catch_unwind::h57fb70202d1ae368
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19
[INFO] [stderr]     23:     0x5e01757ee080 - std::panic::catch_unwind::h4b724a52bb5803b4
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x5e01757ee080 - std::rt::lang_start_internal::{{closure}}::h3724b3072c80532a
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x5e01757ee080 - std::panicking::catch_unwind::do_call::h4f6e90f858bd1c3f
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40
[INFO] [stderr]     26:     0x5e01757ee080 - std::panicking::catch_unwind::h81c085c0d350991c
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19
[INFO] [stderr]     27:     0x5e01757ee080 - std::panic::catch_unwind::h289049af1176d82a
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x5e01757ee080 - std::rt::lang_start_internal::h3c37ebeb799b11e1
[INFO] [stderr]                                  at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x5e01757aa451 - std::rt::lang_start::hf57fe0baee25bbf1
[INFO] [stderr]     30:     0x5e01757ad135 - main
[INFO] [stderr]     31:     0x7de7437e41ca - <unknown>
[INFO] [stderr]     32:     0x7de7437e428b - __libc_start_main
[INFO] [stderr]     33:     0x5e01757a8fd5 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "205feb49c00ccb69917d5866e0ad68c3f2de80d41d31a9c784157b25d1ebb51c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "205feb49c00ccb69917d5866e0ad68c3f2de80d41d31a9c784157b25d1ebb51c", kill_on_drop: false }`
[INFO] [stdout] 205feb49c00ccb69917d5866e0ad68c3f2de80d41d31a9c784157b25d1ebb51c