[INFO] fetching crate krakenuniq-rs 0.0.4... [INFO] testing krakenuniq-rs-0.0.4 against master#350d0ef0ec0493e6d21cfb265cb8211a0e74d766 for pr-145330-1 [INFO] extracting crate krakenuniq-rs 0.0.4 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate krakenuniq-rs 0.0.4 [INFO] finished tweaking crates.io crate krakenuniq-rs 0.0.4 [INFO] tweaked toml for crates.io crate krakenuniq-rs 0.0.4 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate krakenuniq-rs 0.0.4 on toolchain 350d0ef0ec0493e6d21cfb265cb8211a0e74d766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate krakenuniq-rs 0.0.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded console v0.15.10 [INFO] [stderr] Downloaded thiserror-impl v2.0.9 [INFO] [stderr] Downloaded spinners v4.1.1 [INFO] [stderr] Downloaded thiserror v2.0.9 [INFO] [stderr] Downloaded miniz_oxide v0.8.2 [INFO] [stderr] Downloaded indicatif v0.17.9 [INFO] [stderr] Downloaded flate2 v1.0.35 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5eccb3814daf5b18d719e34143fac44253169168abd19912e882adf28a5feefe [INFO] running `Command { std: "docker" "start" "-a" "5eccb3814daf5b18d719e34143fac44253169168abd19912e882adf28a5feefe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5eccb3814daf5b18d719e34143fac44253169168abd19912e882adf28a5feefe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5eccb3814daf5b18d719e34143fac44253169168abd19912e882adf28a5feefe", kill_on_drop: false }` [INFO] [stdout] 5eccb3814daf5b18d719e34143fac44253169168abd19912e882adf28a5feefe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 470ba5f17230cd6b121e3f2f71b650ccd72e5c0b1d23fd7ac802aa315d652a93 [INFO] running `Command { std: "docker" "start" "-a" "470ba5f17230cd6b121e3f2f71b650ccd72e5c0b1d23fd7ac802aa315d652a93", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling portable-atomic v1.10.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling thiserror v2.0.9 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling miniz_oxide v0.8.2 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling syn v2.0.93 [INFO] [stderr] Compiling console v0.15.10 [INFO] [stderr] Compiling parking_lot v0.12.3 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling indicatif v0.17.9 [INFO] [stderr] Compiling thiserror-impl v2.0.9 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling strum v0.24.1 [INFO] [stderr] Compiling spinners v4.1.1 [INFO] [stderr] Compiling env_filter v0.1.3 [INFO] [stderr] Compiling env_logger v0.11.6 [INFO] [stderr] Compiling krakenuniq-rs v0.0.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::collections::BTreeMap` [INFO] [stdout] --> src/krakendb.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::BTreeMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufRead` and `BufReader` [INFO] [stdout] --> src/krakendb.rs:5:15 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error as IoError, ErrorKind, Read, Seek, SeekFrom}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ErrorKind` and `Error` [INFO] [stdout] --> src/taxdb.rs:5:35 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error, ErrorKind}; [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::AHashMap` [INFO] [stdout] --> src/lib.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use ahash::AHashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `old_base` [INFO] [stdout] --> src/classify/classify_sequence.rs:41:29 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_old_base` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/classify/classify_sequence.rs:262:14 [INFO] [stdout] | [INFO] [stdout] 262 | let (mut encoded, valid) = encode_first_kmer(window); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t0` [INFO] [stdout] --> src/lib.rs:141:9 [INFO] [stdout] | [INFO] [stdout] 141 | let t0 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t0` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t1` [INFO] [stdout] --> src/lib.rs:147:9 [INFO] [stdout] | [INFO] [stdout] 147 | let t1 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `roll_kmer_2bit` is never used [INFO] [stdout] --> src/classify/classify_sequence.rs:41:4 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 17.07s [INFO] running `Command { std: "docker" "inspect" "470ba5f17230cd6b121e3f2f71b650ccd72e5c0b1d23fd7ac802aa315d652a93", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "470ba5f17230cd6b121e3f2f71b650ccd72e5c0b1d23fd7ac802aa315d652a93", kill_on_drop: false }` [INFO] [stdout] 470ba5f17230cd6b121e3f2f71b650ccd72e5c0b1d23fd7ac802aa315d652a93 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9b3b24a5a55fae27659d167a799afb308efb3aab164f59df3eaf7e5ff7499fdc [INFO] running `Command { std: "docker" "start" "-a" "9b3b24a5a55fae27659d167a799afb308efb3aab164f59df3eaf7e5ff7499fdc", kill_on_drop: false }` [INFO] [stderr] Compiling krakenuniq-rs v0.0.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::collections::BTreeMap` [INFO] [stdout] --> src/krakendb.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::BTreeMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufRead` and `BufReader` [INFO] [stdout] --> src/krakendb.rs:5:15 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error as IoError, ErrorKind, Read, Seek, SeekFrom}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ErrorKind` and `Error` [INFO] [stdout] --> src/taxdb.rs:5:35 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error, ErrorKind}; [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::AHashMap` [INFO] [stdout] --> src/lib.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use ahash::AHashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `old_base` [INFO] [stdout] --> src/classify/classify_sequence.rs:41:29 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_old_base` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/classify/classify_sequence.rs:262:14 [INFO] [stdout] | [INFO] [stdout] 262 | let (mut encoded, valid) = encode_first_kmer(window); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t0` [INFO] [stdout] --> src/lib.rs:141:9 [INFO] [stdout] | [INFO] [stdout] 141 | let t0 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t0` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t1` [INFO] [stdout] --> src/lib.rs:147:9 [INFO] [stdout] | [INFO] [stdout] 147 | let t1 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `roll_kmer_2bit` is never used [INFO] [stdout] --> src/classify/classify_sequence.rs:41:4 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::BTreeMap` [INFO] [stdout] --> src/krakendb.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::BTreeMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufRead` and `BufReader` [INFO] [stdout] --> src/krakendb.rs:5:15 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error as IoError, ErrorKind, Read, Seek, SeekFrom}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ErrorKind` and `Error` [INFO] [stdout] --> src/taxdb.rs:5:35 [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::{BufRead, BufReader, Error, ErrorKind}; [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::AHashMap` [INFO] [stdout] --> src/lib.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use ahash::AHashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `old_base` [INFO] [stdout] --> src/classify/classify_sequence.rs:41:29 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_old_base` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/classify/classify_sequence.rs:262:14 [INFO] [stdout] | [INFO] [stdout] 262 | let (mut encoded, valid) = encode_first_kmer(window); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t0` [INFO] [stdout] --> src/lib.rs:141:9 [INFO] [stdout] | [INFO] [stdout] 141 | let t0 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t0` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t1` [INFO] [stdout] --> src/lib.rs:147:9 [INFO] [stdout] | [INFO] [stdout] 147 | let t1 = Instant::now(); [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_t1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `roll_kmer_2bit` is never used [INFO] [stdout] --> src/classify/classify_sequence.rs:41:4 [INFO] [stdout] | [INFO] [stdout] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.89s [INFO] running `Command { std: "docker" "inspect" "9b3b24a5a55fae27659d167a799afb308efb3aab164f59df3eaf7e5ff7499fdc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b3b24a5a55fae27659d167a799afb308efb3aab164f59df3eaf7e5ff7499fdc", kill_on_drop: false }` [INFO] [stdout] 9b3b24a5a55fae27659d167a799afb308efb3aab164f59df3eaf7e5ff7499fdc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+350d0ef0ec0493e6d21cfb265cb8211a0e74d766" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e526a2bb99287f0e6c5dd87eb08d10cd946dafd3a9fc2d1ae4c36fb6c8fa9a9f [INFO] running `Command { std: "docker" "start" "-a" "e526a2bb99287f0e6c5dd87eb08d10cd946dafd3a9fc2d1ae4c36fb6c8fa9a9f", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `std::collections::BTreeMap` [INFO] [stderr] --> src/krakendb.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use std::collections::BTreeMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `BufRead` and `BufReader` [INFO] [stderr] --> src/krakendb.rs:5:15 [INFO] [stderr] | [INFO] [stderr] 5 | use std::io::{BufRead, BufReader, Error as IoError, ErrorKind, Read, Seek, SeekFrom}; [INFO] [stderr] | ^^^^^^^ ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `ErrorKind` and `Error` [INFO] [stderr] --> src/taxdb.rs:5:35 [INFO] [stderr] | [INFO] [stderr] 5 | use std::io::{BufRead, BufReader, Error, ErrorKind}; [INFO] [stderr] | ^^^^^ ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ahash::AHashMap` [INFO] [stderr] --> src/lib.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | use ahash::AHashMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `old_base` [INFO] [stderr] --> src/classify/classify_sequence.rs:41:29 [INFO] [stderr] | [INFO] [stderr] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_old_base` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/classify/classify_sequence.rs:262:14 [INFO] [stderr] | [INFO] [stderr] 262 | let (mut encoded, valid) = encode_first_kmer(window); [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `t0` [INFO] [stderr] --> src/lib.rs:141:9 [INFO] [stderr] | [INFO] [stderr] 141 | let t0 = Instant::now(); [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_t0` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `t1` [INFO] [stderr] --> src/lib.rs:147:9 [INFO] [stderr] | [INFO] [stderr] 147 | let t1 = Instant::now(); [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_t1` [INFO] [stderr] [INFO] [stderr] warning: function `roll_kmer_2bit` is never used [INFO] [stderr] --> src/classify/classify_sequence.rs:41:4 [INFO] [stderr] | [INFO] [stderr] 41 | fn roll_kmer_2bit(old: u64, old_base: u8, new_base: u8, k: usize) -> (u64, bool) { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `krakenuniq-rs` (lib) generated 9 warnings (run `cargo fix --lib -p krakenuniq-rs` to apply 5 suggestions) [INFO] [stderr] warning: `krakenuniq-rs` (lib test) generated 9 warnings (9 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/krakenuniq_rs-87d84e4c32da158e) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_classify_reads_api ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::test_classify_reads_api stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_classify_reads_api' (24) panicked at src/lib.rs:222:14: [INFO] [stdout] Cannot read directory 'barcode03': Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x6231e025df72 - std::backtrace_rs::backtrace::libunwind::trace::h0fb8082ca5562a61 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x6231e025df72 - std::backtrace_rs::backtrace::trace_unsynchronized::hfaa258994374a3cd [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x6231e025df72 - std::sys::backtrace::_print_fmt::h11496fe34963a885 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x6231e025df72 - ::fmt::hff1a9408d012ee89 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x6231e0282b0f - core::fmt::rt::Argument::fmt::hf11195b61445f5d1 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x6231e0282b0f - core::fmt::write::h2f1fc679f228cc52 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x6231e024ab23 - std::io::default_write_fmt::h12bd533187bc883d [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x6231e024ab23 - std::io::Write::write_fmt::h926a1fdfdcb90065 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x6231e025ddc2 - std::sys::backtrace::BacktraceLock::print::h28bfdbcac6d3828b [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x6231e024921c - std::panicking::default_hook::{{closure}}::h1f968e3a24b0e3b4 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x6231e0249099 - std::panicking::default_hook::h43da101644971931 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x6231e01abd3e - as core::ops::function::Fn>::call::h4b2012949041da5d [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x6231e01abd3e - test::test_main_with_exit_callback::{{closure}}::h53c9154cdc260357 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x6231e0249823 - as core::ops::function::Fn>::call::h911f2e3e7e84b764 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x6231e0249823 - std::panicking::panic_with_hook::hb4e916c3e65eccec [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x6231e025d94a - std::panicking::panic_handler::{{closure}}::hbff715d0475cf1bd [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x6231e025d8a9 - std::sys::backtrace::__rust_end_short_backtrace::hd6f43484e45a4955 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x6231e0249efd - __rustc[b29d3319de9a3146]::rust_begin_unwind [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x6231e0289270 - core::panicking::panic_fmt::h5f8d281875be5ff1 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x6231e028a916 - core::result::unwrap_failed::hbb243a6a8b53218d [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/result.rs:1852:5 [INFO] [stdout] 20: 0x6231e01a3308 - core::result::Result::expect::h99f2dc5b842c7d69 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/result.rs:1175:23 [INFO] [stdout] 21: 0x6231e0157838 - krakenuniq_rs::tests::test_classify_reads_api::h0fcb763694f8a10a [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:222:14 [INFO] [stdout] 22: 0x6231e01582b7 - krakenuniq_rs::tests::test_classify_reads_api::{{closure}}::h01d3b252badca167 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:219:33 [INFO] [stdout] 23: 0x6231e0194026 - core::ops::function::FnOnce::call_once::h0e99d868fab13262 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 24: 0x6231e01b127b - core::ops::function::FnOnce::call_once::haf4e03bb51ef1351 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 25: 0x6231e01b127b - test::__rust_begin_short_backtrace::h50f5566ee84f2f21 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x6231e01b4475 - test::run_test_in_process::{{closure}}::heb3733b71d876eca [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x6231e01b4475 - as core::ops::function::FnOnce<()>>::call_once::he2fe41e1b161faa9 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x6231e01b4475 - std::panicking::catch_unwind::do_call::h00aa383d8fd97a09 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stdout] 29: 0x6231e01b4475 - std::panicking::catch_unwind::he482e1914bc21641 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stdout] 30: 0x6231e01b4475 - std::panic::catch_unwind::h86ac9705098f4f22 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x6231e01b4475 - test::run_test_in_process::h636a992821e3c6aa [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x6231e01b4475 - test::run_test::{{closure}}::he454cc9a192df79f [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x6231e01d9e24 - test::run_test::{{closure}}::haec47455908dff86 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x6231e01d9e24 - std::sys::backtrace::__rust_begin_short_backtrace::h230785972524cdc1 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 35: 0x6231e01c0a3a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::haa5a562db4cde838 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x6231e01c0a3a - as core::ops::function::FnOnce<()>>::call_once::h89254f37a55d0a87 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x6231e01c0a3a - std::panicking::catch_unwind::do_call::h499f5a462f019d9d [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:590:40 [INFO] [stdout] 38: 0x6231e01c0a3a - std::panicking::catch_unwind::h6736fbbb1a264383 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panicking.rs:553:19 [INFO] [stdout] 39: 0x6231e01c0a3a - std::panic::catch_unwind::h49ea7bdd1cbee572 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x6231e01c0a3a - std::thread::Builder::spawn_unchecked_::{{closure}}::h653dfa62acf32f5a [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x6231e01c0a3a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h82582a626a045a45 [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 42: 0x6231e02331cf - as core::ops::function::FnOnce>::call_once::h4ab26c07513156cc [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x6231e02331cf - std::sys::pal::unix::thread::Thread::new::thread_start::h66ff1bba185a50cf [INFO] [stdout] at /rustc/350d0ef0ec0493e6d21cfb265cb8211a0e74d766/library/std/src/sys/pal/unix/thread.rs:107:17 [INFO] [stdout] 44: 0x77d6a983caa4 - [INFO] [stdout] 45: 0x77d6a98c9a34 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::test_classify_reads_api [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "e526a2bb99287f0e6c5dd87eb08d10cd946dafd3a9fc2d1ae4c36fb6c8fa9a9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e526a2bb99287f0e6c5dd87eb08d10cd946dafd3a9fc2d1ae4c36fb6c8fa9a9f", kill_on_drop: false }` [INFO] [stdout] e526a2bb99287f0e6c5dd87eb08d10cd946dafd3a9fc2d1ae4c36fb6c8fa9a9f