[INFO] cloning repository https://github.com/ntBre/rdkit-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ntBre/rdkit-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fdc320774d101f4cc84f964bef9547af88f5d2c9 [INFO] checking ntBre/rdkit-rs against try#028201683a76a5cd349729c6819c46607119c4e8 for pr-144157 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] finished tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] tweaked toml for git repo https://github.com/ntBre/rdkit-rs written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ntBre/rdkit-rs on toolchain 028201683a76a5cd349729c6819c46607119c4e8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ntBre/rdkit-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/ntBre/rdkit-sys` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking ntBre/rdkit-rs against try#028201683a76a5cd349729c6819c46607119c4e8 for pr-144157 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] finished tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] tweaked toml for git repo https://github.com/ntBre/rdkit-rs written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ntBre/rdkit-rs on toolchain 028201683a76a5cd349729c6819c46607119c4e8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ntBre/rdkit-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0eb3cc6ec2379d7d6635ff6f524db7f2945fefb8527e0ce1afe504a5431811a4 [INFO] running `Command { std: "docker" "start" "-a" "0eb3cc6ec2379d7d6635ff6f524db7f2945fefb8527e0ce1afe504a5431811a4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0eb3cc6ec2379d7d6635ff6f524db7f2945fefb8527e0ce1afe504a5431811a4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0eb3cc6ec2379d7d6635ff6f524db7f2945fefb8527e0ce1afe504a5431811a4", kill_on_drop: false }` [INFO] [stdout] 0eb3cc6ec2379d7d6635ff6f524db7f2945fefb8527e0ce1afe504a5431811a4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+028201683a76a5cd349729c6819c46607119c4e8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 214e1f1c087c17f8316b720c6d1d7b5bf729e4fef886bc3ff704198e6ed7be62 [INFO] running `Command { std: "docker" "start" "-a" "214e1f1c087c17f8316b720c6d1d7b5bf729e4fef886bc3ff704198e6ed7be62", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking itoa v1.0.10 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea) [INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-9a38c4ed97fad3fd/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=include/shim.h [INFO] [stderr] cargo:rerun-if-changed=include/shim.cpp [INFO] [stderr] cargo:rerun-if-changed=include/Makefile [INFO] [stderr] cargo:rerun-if-changed=wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=RDROOT [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/rdkit-sys-f8b7de60bf7e6bc2/dc5d75e/build.rs:15:9: [INFO] [stderr] rdkit-sys: RDROOT must be set in the environment [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5978dc9c8102 - std::backtrace_rs::backtrace::libunwind::trace::h092193d0be716397 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5978dc9c8102 - std::backtrace_rs::backtrace::trace_unsynchronized::hee353a190434dd48 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5978dc9c8102 - std::sys::backtrace::_print_fmt::ha43ae459561b8e8b [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5978dc9c8102 - ::fmt::h042482a41b318bcd [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5978dc9eeb63 - core::fmt::rt::Argument::fmt::h5c183668751b3d24 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5978dc9eeb63 - core::fmt::write::h32655d8ddfb61772 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/core/src/fmt/mod.rs:1469:25 [INFO] [stderr] 6: 0x5978dc9c4f03 - std::io::default_write_fmt::h1446be99cce3923f [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5978dc9c4f03 - std::io::Write::write_fmt::h7507d6e881f93625 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5978dc9c7f52 - std::sys::backtrace::BacktraceLock::print::h6680867f1468c90a [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5978dc9c9683 - std::panicking::default_hook::{{closure}}::h78c515b9e3a5e642 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:300:27 [INFO] [stderr] 10: 0x5978dc9c9465 - std::panicking::default_hook::hfbf9a0dd15885e47 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x5978dc9ca095 - std::panicking::rust_panic_with_hook::hbe55e78ca41d7dab [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x5978dc9c9df6 - std::panicking::begin_panic_handler::{{closure}}::h9e3b1c158102db89 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:699:13 [INFO] [stderr] 13: 0x5978dc9c8609 - std::sys::backtrace::__rust_end_short_backtrace::hafac903cbe3345ea [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5978dc9c9abd - __rustc[fd03702064115cce]::rust_begin_unwind [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x5978dc9ecef0 - core::panicking::panic_fmt::hf20aa5dfa5b51e53 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5978dc47b7a4 - build_script_build::main::h711a7406c0a5c464 [INFO] [stderr] 17: 0x5978dc478313 - core::ops::function::FnOnce::call_once::hb78971a03df61ab8 [INFO] [stderr] 18: 0x5978dc477fa6 - std::sys::backtrace::__rust_begin_short_backtrace::hbadc378276639dc0 [INFO] [stderr] 19: 0x5978dc477f89 - std::rt::lang_start::{{closure}}::h80ab9785e6ce5845 [INFO] [stderr] 20: 0x5978dc9bfe00 - core::ops::function::impls:: for &F>::call_once::h91340f42ad8b8a2c [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x5978dc9bfe00 - std::panicking::catch_unwind::do_call::h9e559085a393ccdd [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:589:40 [INFO] [stderr] 22: 0x5978dc9bfe00 - std::panicking::catch_unwind::h0e7cdc2fd7a5750c [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:552:19 [INFO] [stderr] 23: 0x5978dc9bfe00 - std::panic::catch_unwind::h44c56acec16f2c24 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x5978dc9bfe00 - std::rt::lang_start_internal::{{closure}}::h0145d887e08ed968 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x5978dc9bfe00 - std::panicking::catch_unwind::do_call::h288e28ad5bb315a2 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:589:40 [INFO] [stderr] 26: 0x5978dc9bfe00 - std::panicking::catch_unwind::h7d281ec72402810f [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panicking.rs:552:19 [INFO] [stderr] 27: 0x5978dc9bfe00 - std::panic::catch_unwind::hdb8b2ae6bb632683 [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5978dc9bfe00 - std::rt::lang_start_internal::h7d25bb65b157cc9c [INFO] [stderr] at /rustc/028201683a76a5cd349729c6819c46607119c4e8/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x5978dc477f71 - std::rt::lang_start::h42e9e3713786c97a [INFO] [stderr] 30: 0x5978dc47b7e5 - main [INFO] [stderr] 31: 0x7bbf88ee01ca - [INFO] [stderr] 32: 0x7bbf88ee028b - __libc_start_main [INFO] [stderr] 33: 0x5978dc477495 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "214e1f1c087c17f8316b720c6d1d7b5bf729e4fef886bc3ff704198e6ed7be62", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "214e1f1c087c17f8316b720c6d1d7b5bf729e4fef886bc3ff704198e6ed7be62", kill_on_drop: false }` [INFO] [stdout] 214e1f1c087c17f8316b720c6d1d7b5bf729e4fef886bc3ff704198e6ed7be62