[INFO] cloning repository https://github.com/bluenote-1577/chrom_mini_graph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/chrom_mini_graph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9177a017c51091fe0da11f40e3da2d23a44d8df4 [INFO] checking bluenote-1577/chrom_mini_graph/9177a017c51091fe0da11f40e3da2d23a44d8df4 against master#64b185eddaa1d7ddf5e0c024be23b9cbba6c1722 for pr-143929 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fchrom_mini_graph" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/bluenote-1577/chrom_mini_graph [INFO] finished tweaking git repo https://github.com/bluenote-1577/chrom_mini_graph [INFO] tweaked toml for git repo https://github.com/bluenote-1577/chrom_mini_graph written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/bluenote-1577/chrom_mini_graph on toolchain 64b185eddaa1d7ddf5e0c024be23b9cbba6c1722 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+64b185eddaa1d7ddf5e0c024be23b9cbba6c1722" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/bluenote-1577/chrom_mini_graph already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+64b185eddaa1d7ddf5e0c024be23b9cbba6c1722" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded itoa v1.0.2 [INFO] [stderr] Downloaded simple_logger v2.1.0 [INFO] [stderr] Downloaded tinyvec v1.5.0 [INFO] [stderr] Downloaded time v0.3.9 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded rust-htslib v0.38.2 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded getset v0.1.1 [INFO] [stderr] Downloaded ordered-float v1.1.1 [INFO] [stderr] Downloaded libwfa v0.1.2 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded ndarray v0.15.3 [INFO] [stderr] Downloaded block-aligner v0.2.0 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded cbindgen v0.20.0 [INFO] [stderr] Downloaded libc v0.2.126 [INFO] [stderr] Downloaded matrixmultiply v0.3.1 [INFO] [stderr] Downloaded num-complex v0.4.0 [INFO] [stderr] Downloaded bio v0.37.1 [INFO] [stderr] Downloaded 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"/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8955075918b6d00525c617f7c34ee2595c70db70b3cf844dc875e4d3604499b" "/opt/rustwide/cargo-home/bin/cargo" "+64b185eddaa1d7ddf5e0c024be23b9cbba6c1722" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f7a360ece6f62f8a4e1f6f3f7519635cc37c935a9f32ecb77737cf7c9fcd523c [INFO] running `Command { std: "docker" "start" "-a" "f7a360ece6f62f8a4e1f6f3f7519635cc37c935a9f32ecb77737cf7c9fcd523c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f7a360ece6f62f8a4e1f6f3f7519635cc37c935a9f32ecb77737cf7c9fcd523c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7a360ece6f62f8a4e1f6f3f7519635cc37c935a9f32ecb77737cf7c9fcd523c", kill_on_drop: false }` [INFO] [stdout] f7a360ece6f62f8a4e1f6f3f7519635cc37c935a9f32ecb77737cf7c9fcd523c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8955075918b6d00525c617f7c34ee2595c70db70b3cf844dc875e4d3604499b" "/opt/rustwide/cargo-home/bin/cargo" "+64b185eddaa1d7ddf5e0c024be23b9cbba6c1722" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] df460b1e8abee370d8989c6da6c4afa1c894fe22b1954432781e5a0de95e4758 [INFO] running `Command { std: "docker" "start" "-a" "df460b1e8abee370d8989c6da6c4afa1c894fe22b1954432781e5a0de95e4758", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling proc-macro2 v1.0.29 [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling pkg-config v0.3.22 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] 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[INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Compiling getset v0.1.1 [INFO] [stderr] Checking simple_logger v2.1.0 [INFO] [stderr] Checking thiserror v1.0.29 [INFO] [stderr] Checking bio-types v0.12.0 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling toml v0.5.8 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking debruijn v0.3.4 [INFO] [stderr] Compiling block-aligner v0.2.0 [INFO] [stderr] Compiling libwfa v0.1.2 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking rust-htslib v0.38.2 [INFO] [stderr] Checking chrom_mini_graph v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer10` [INFO] [stdout] --> src/seeding_methods_bit.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use debruijn::kmer::Kmer10; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer12` [INFO] [stdout] --> src/seeding_methods_bit.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use debruijn::kmer::Kmer12; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer8` [INFO] [stdout] --> src/seeding_methods_bit.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::kmer::Kmer8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `simple_logger::SimpleLogger` [INFO] [stdout] --> src/chain.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use simple_logger::SimpleLogger; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/chain.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around `if` condition [INFO] [stdout] --> src/chain.rs:1335:12 [INFO] [stdout] | [INFO] [stdout] 1335 | if (i > 0 && !chain_reads) { [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 1335 - if (i > 0 && !chain_reads) { [INFO] [stdout] 1335 + if i > 0 && !chain_reads { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::dna_string::*` [INFO] [stdout] --> src/align.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::dna_string::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `simple_logger::SimpleLogger` [INFO] [stdout] --> src/align.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use simple_logger::SimpleLogger; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::avl_tree::SearchTree` [INFO] [stdout] --> src/coord_chain.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::avl_tree::SearchTree; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/coord_chain.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `smallvec::SmallVec` [INFO] [stdout] --> src/coord_chain.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use smallvec::SmallVec; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer10` [INFO] [stdout] --> src/seeding_methods_bit.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use debruijn::kmer::Kmer10; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer12` [INFO] [stdout] --> src/seeding_methods_bit.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use debruijn::kmer::Kmer12; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::kmer::Kmer8` [INFO] [stdout] --> src/seeding_methods_bit.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use debruijn::kmer::Kmer8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `simple_logger::SimpleLogger` [INFO] [stdout] --> src/chain.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use simple_logger::SimpleLogger; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/chain.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around `if` condition [INFO] [stdout] --> src/chain.rs:1335:12 [INFO] [stdout] | [INFO] [stdout] 1335 | if (i > 0 && !chain_reads) { [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 1335 - if (i > 0 && !chain_reads) { [INFO] [stdout] 1335 + if i > 0 && !chain_reads { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::dna_string::*` [INFO] [stdout] --> src/align.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::dna_string::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `simple_logger::SimpleLogger` [INFO] [stdout] --> src/align.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use simple_logger::SimpleLogger; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::avl_tree::SearchTree` [INFO] [stdout] --> src/coord_chain.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::avl_tree::SearchTree; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Kmer` [INFO] [stdout] --> src/coord_chain.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::Kmer; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `smallvec::SmallVec` [INFO] [stdout] --> src/coord_chain.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use smallvec::SmallVec; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:753:21 [INFO] [stdout] | [INFO] [stdout] 752 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 753 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/coord_chain.rs:318:9 [INFO] [stdout] | [INFO] [stdout] 317 | return best_superchain_ret; [INFO] [stdout] | -------------------------- any code following this expression is unreachable [INFO] [stdout] 318 | / return best_superchain [INFO] [stdout] 319 | | .iter_mut() [INFO] [stdout] 320 | | .map(|x| (mem::take(&mut x.0), x.3, forward_strand)) [INFO] [stdout] 321 | | .collect(); [INFO] [stdout] | |_______________________^ unreachable statement [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_contains_dist_not` is assigned to, but never used [INFO] [stdout] --> src/graph_utils.rs:285:13 [INFO] [stdout] | [INFO] [stdout] 285 | let mut num_contains_dist_not = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_num_contains_dist_not` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `circular` [INFO] [stdout] --> src/graph_utils.rs:260:5 [INFO] [stdout] | [INFO] [stdout] 260 | circular: bool, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_circular` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/align.rs:753:21 [INFO] [stdout] | [INFO] [stdout] 752 | panic!("{}\n{}", prev_char, cg_str); [INFO] [stdout] | ----------------------------------- any code following this expression is unreachable [INFO] [stdout] 753 | op = Operation::Sentinel; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_utils.rs:257:5 [INFO] [stdout] | [INFO] [stdout] 257 | mut anchors: Vec<(u32, u32)>, [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_samp_coord` is assigned to, but never used [INFO] [stdout] --> src/seeding_methods_bit.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let mut num_samp_coord = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_num_samp_coord` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable statement [INFO] [stdout] --> src/coord_chain.rs:318:9 [INFO] [stdout] | [INFO] [stdout] 317 | return best_superchain_ret; [INFO] [stdout] | -------------------------- any code following this expression is unreachable [INFO] [stdout] 318 | / return best_superchain [INFO] [stdout] 319 | | .iter_mut() [INFO] [stdout] 320 | | .map(|x| (mem::take(&mut x.0), x.3, forward_strand)) [INFO] [stdout] 321 | | .collect(); [INFO] [stdout] | |_______________________^ unreachable statement [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `frequent_kmers` [INFO] [stdout] --> src/seeding_methods_bit.rs:247:5 [INFO] [stdout] | [INFO] [stdout] 247 | frequent_kmers: &FxHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_frequent_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/chain.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | let mut gap_cost = (ref_order_dist - query_order_dist).abs(); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `count` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:241:21 [INFO] [stdout] | [INFO] [stdout] 241 | let mut count = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_count` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_len` [INFO] [stdout] --> src/chain.rs:290:9 [INFO] [stdout] | [INFO] [stdout] 290 | let q_len = seeds_q.len(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/chain.rs:291:9 [INFO] [stdout] | [INFO] [stdout] 291 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read_length` [INFO] [stdout] --> src/chain.rs:454:5 [INFO] [stdout] | [INFO] [stdout] 454 | read_length: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/chain.rs:480:25 [INFO] [stdout] | [INFO] [stdout] 480 | let mut tup = colour_paths.get_mut(&colour).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `best_node` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:618:13 [INFO] [stdout] | [INFO] [stdout] 618 | let mut best_node = first_node; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_best_node` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `best_node` is never read [INFO] [stdout] --> src/chain.rs:747:21 [INFO] [stdout] | [INFO] [stdout] 747 | best_node = intermediate_node; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read_length` [INFO] [stdout] --> src/chain.rs:603:5 [INFO] [stdout] | [INFO] [stdout] 603 | read_length: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mandatory_color` [INFO] [stdout] --> src/chain.rs:1170:9 [INFO] [stdout] | [INFO] [stdout] 1170 | let mandatory_color = Color::MAX; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mandatory_color` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_contains_dist_not` is assigned to, but never used [INFO] [stdout] --> src/graph_utils.rs:285:13 [INFO] [stdout] | [INFO] [stdout] 285 | let mut num_contains_dist_not = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_num_contains_dist_not` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `circular` [INFO] [stdout] --> src/graph_utils.rs:260:5 [INFO] [stdout] | [INFO] [stdout] 260 | circular: bool, [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_circular` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_utils.rs:257:5 [INFO] [stdout] | [INFO] [stdout] 257 | mut anchors: Vec<(u32, u32)>, [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `num_samp_coord` is assigned to, but never used [INFO] [stdout] --> src/seeding_methods_bit.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let mut num_samp_coord = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_num_samp_coord` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `frequent_kmers` [INFO] [stdout] --> src/seeding_methods_bit.rs:247:5 [INFO] [stdout] | [INFO] [stdout] 247 | frequent_kmers: &FxHashMap, [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_frequent_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_node` [INFO] [stdout] --> src/align.rs:421:13 [INFO] [stdout] | [INFO] [stdout] 421 | let r_node = &ref_graph[anchors[i].0 as usize]; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_r_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_cpy` [INFO] [stdout] --> src/align.rs:632:13 [INFO] [stdout] | [INFO] [stdout] 632 | let r_cpy = ref_map_string.clone(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_r_cpy` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_cpy` [INFO] [stdout] --> src/align.rs:633:13 [INFO] [stdout] | [INFO] [stdout] 633 | let q_cpy = read_map_string.clone(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_cpy` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `prev_char` is never read [INFO] [stdout] --> src/align.rs:761:17 [INFO] [stdout] | [INFO] [stdout] 761 | prev_char = c; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/chain.rs:64:9 [INFO] [stdout] | [INFO] [stdout] 64 | let mut gap_cost = (ref_order_dist - query_order_dist).abs(); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `count` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:241:21 [INFO] [stdout] | [INFO] [stdout] 241 | let mut count = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_count` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_len` [INFO] [stdout] --> src/chain.rs:290:9 [INFO] [stdout] | [INFO] [stdout] 290 | let q_len = seeds_q.len(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/chain.rs:291:9 [INFO] [stdout] | [INFO] [stdout] 291 | let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read_length` [INFO] [stdout] --> src/chain.rs:454:5 [INFO] [stdout] | [INFO] [stdout] 454 | read_length: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/align.rs:494:9 [INFO] [stdout] | [INFO] [stdout] 494 | let mut break_mm = 3; [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/chain.rs:480:25 [INFO] [stdout] | [INFO] [stdout] 480 | let mut tup = colour_paths.get_mut(&colour).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `best_node` is assigned to, but never used [INFO] [stdout] --> src/chain.rs:618:13 [INFO] [stdout] | [INFO] [stdout] 618 | let mut best_node = first_node; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_best_node` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `best_node` is never read [INFO] [stdout] --> src/chain.rs:747:21 [INFO] [stdout] | [INFO] [stdout] 747 | best_node = intermediate_node; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read_length` [INFO] [stdout] --> src/chain.rs:603:5 [INFO] [stdout] | [INFO] [stdout] 603 | read_length: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/coord_chain.rs:206:9 [INFO] [stdout] | [INFO] [stdout] 206 | let mut best_superchain = [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `mandatory_color` [INFO] [stdout] --> src/chain.rs:1170:9 [INFO] [stdout] | [INFO] [stdout] 1170 | let mandatory_color = Color::MAX; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mandatory_color` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/coord_chain.rs:601:9 [INFO] [stdout] | [INFO] [stdout] 601 | let mut gap_cost = (ref_order_dist - query_order_dist).abs(); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `State` is never constructed [INFO] [stdout] --> src/graph_utils.rs:110:8 [INFO] [stdout] | [INFO] [stdout] 110 | struct State { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_node` [INFO] [stdout] --> src/align.rs:421:13 [INFO] [stdout] | [INFO] [stdout] 421 | let r_node = &ref_graph[anchors[i].0 as usize]; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_r_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r_cpy` [INFO] [stdout] --> src/align.rs:632:13 [INFO] [stdout] | [INFO] [stdout] 632 | let r_cpy = ref_map_string.clone(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_r_cpy` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `q_cpy` [INFO] [stdout] --> src/align.rs:633:13 [INFO] [stdout] | [INFO] [stdout] 633 | let q_cpy = read_map_string.clone(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_q_cpy` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `prev_char` is never read [INFO] [stdout] --> src/align.rs:761:17 [INFO] [stdout] | [INFO] [stdout] 761 | prev_char = c; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/align.rs:494:9 [INFO] [stdout] | [INFO] [stdout] 494 | let mut break_mm = 3; [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/coord_chain.rs:206:9 [INFO] [stdout] | [INFO] [stdout] 206 | let mut best_superchain = [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/coord_chain.rs:601:9 [INFO] [stdout] | [INFO] [stdout] 601 | let mut gap_cost = (ref_order_dist - query_order_dist).abs(); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `State` is never constructed [INFO] [stdout] --> src/graph_utils.rs:110:8 [INFO] [stdout] | [INFO] [stdout] 110 | struct State { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scan_block::*` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use block_aligner::scan_block::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::mem` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use std::mem; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scan_block::*` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use block_aligner::scan_block::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::mem` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use std::mem; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scores` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use block_aligner::scores::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Mer` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use debruijn::Mer; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `order_val_last` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:403:17 [INFO] [stdout] | [INFO] [stdout] 403 | let order_val_last = seeds2[qlen - 1].order_val; [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_order_val_last` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `short_reads` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:537:13 [INFO] [stdout] | [INFO] [stdout] 537 | let short_reads = matches_subc.is_present("short_reads"); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_short_reads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dont_use_kmers` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:544:50 [INFO] [stdout] | [INFO] [stdout] 544 | let (mut ref_graph, chroms, chrom_names, dont_use_kmers): ( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dont_use_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `anchor_file` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:556:17 [INFO] [stdout] | [INFO] [stdout] 556 | let mut anchor_file = BufWriter::new(File::create("read_anchor_hits.txt").unwrap()); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_anchor_file` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:752:37 [INFO] [stdout] | [INFO] [stdout] 752 | ... let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:628:29 [INFO] [stdout] | [INFO] [stdout] 628 | let mut anc_score_strand_vec = chain::chain_seeds( [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:687:41 [INFO] [stdout] | [INFO] [stdout] 687 | ... let mut base_anc_score_strand_vec = [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `block_aligner::scores` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use block_aligner::scores::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn::Mer` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use debruijn::Mer; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `order_val_last` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:403:17 [INFO] [stdout] | [INFO] [stdout] 403 | let order_val_last = seeds2[qlen - 1].order_val; [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_order_val_last` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `short_reads` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:537:13 [INFO] [stdout] | [INFO] [stdout] 537 | let short_reads = matches_subc.is_present("short_reads"); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_short_reads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dont_use_kmers` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:544:50 [INFO] [stdout] | [INFO] [stdout] 544 | let (mut ref_graph, chroms, chrom_names, dont_use_kmers): ( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dont_use_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `anchor_file` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:556:17 [INFO] [stdout] | [INFO] [stdout] 556 | let mut anchor_file = BufWriter::new(File::create("read_anchor_hits.txt").unwrap()); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_anchor_file` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:556:13 [INFO] [stdout] | [INFO] [stdout] 556 | let mut anchor_file = BufWriter::new(File::create("read_anchor_hits.txt").unwrap()); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:566:13 [INFO] [stdout] | [INFO] [stdout] 566 | let mut num_mapped_reads = Mutex::new(0); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:569:13 [INFO] [stdout] | [INFO] [stdout] 569 | let mut best_hit_for_read: Mutex> = Mutex::new(FxHashMap::default()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `now` [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:752:37 [INFO] [stdout] | [INFO] [stdout] 752 | ... let now = Instant::now(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_now` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:628:29 [INFO] [stdout] | [INFO] [stdout] 628 | let mut anc_score_strand_vec = chain::chain_seeds( [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:687:41 [INFO] [stdout] | [INFO] [stdout] 687 | ... let mut base_anc_score_strand_vec = [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:556:13 [INFO] [stdout] | [INFO] [stdout] 556 | let mut anchor_file = BufWriter::new(File::create("read_anchor_hits.txt").unwrap()); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:566:13 [INFO] [stdout] | [INFO] [stdout] 566 | let mut num_mapped_reads = Mutex::new(0); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/chrom_mini_graph.rs:569:13 [INFO] [stdout] | [INFO] [stdout] 569 | let mut best_hit_for_read: Mutex> = Mutex::new(FxHashMap::default()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 2m 44s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, nom v5.1.2 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "df460b1e8abee370d8989c6da6c4afa1c894fe22b1954432781e5a0de95e4758", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "df460b1e8abee370d8989c6da6c4afa1c894fe22b1954432781e5a0de95e4758", kill_on_drop: false }` [INFO] [stdout] df460b1e8abee370d8989c6da6c4afa1c894fe22b1954432781e5a0de95e4758