[INFO] cloning repository https://github.com/keithyin/gsmm2-metric [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/gsmm2-metric" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 42075805c888c1a89aa4b8d98f4f93281d4186a4 [INFO] checking keithyin/gsmm2-metric against try#5de9e0e6cf775e94e0de2003f35e183f3f77bfe8 for pr-143808 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/keithyin/gsmm2-metric [INFO] finished tweaking git repo https://github.com/keithyin/gsmm2-metric [INFO] tweaked toml for git repo https://github.com/keithyin/gsmm2-metric written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/keithyin/gsmm2-metric on toolchain 5de9e0e6cf775e94e0de2003f35e183f3f77bfe8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5de9e0e6cf775e94e0de2003f35e183f3f77bfe8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/keithyin/gsmm2-metric already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5de9e0e6cf775e94e0de2003f35e183f3f77bfe8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+5de9e0e6cf775e94e0de2003f35e183f3f77bfe8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7374b4fc7b259b8abcaf0d1824025edd07ad6a33427f4a3b02a330aefebe1c69 [INFO] running `Command { std: "docker" "start" "-a" "7374b4fc7b259b8abcaf0d1824025edd07ad6a33427f4a3b02a330aefebe1c69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7374b4fc7b259b8abcaf0d1824025edd07ad6a33427f4a3b02a330aefebe1c69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7374b4fc7b259b8abcaf0d1824025edd07ad6a33427f4a3b02a330aefebe1c69", kill_on_drop: false }` [INFO] [stdout] 7374b4fc7b259b8abcaf0d1824025edd07ad6a33427f4a3b02a330aefebe1c69 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+5de9e0e6cf775e94e0de2003f35e183f3f77bfe8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8081757e0c132ee46bed472994d9ae6cb9df8cd196b1a67593ec6b6fca40c08f [INFO] running `Command { std: "docker" "start" "-a" "8081757e0c132ee46bed472994d9ae6cb9df8cd196b1a67593ec6b6fca40c08f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking memchr v2.7.5 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking cfg-if v1.0.1 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling zerocopy v0.8.25 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Checking bytemuck v1.23.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Checking writeable v0.6.1 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking litemap v0.8.0 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Checking wide v0.7.32 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Compiling syn v2.0.102 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking hashbrown v0.15.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking tracing-core v0.1.34 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling cc v1.2.26 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking indexmap v2.9.0 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking pin-project-lite v0.2.16 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking regex-syntax v0.6.29 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking deranged v0.4.0 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Checking log v0.4.27 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking unicode-width v0.2.1 [INFO] [stderr] Checking time-core v0.1.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking anstyle v1.0.11 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking num-conv v0.1.0 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking overload v0.1.1 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Checking anstyle-query v1.1.3 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking time v0.3.41 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking anstream v0.6.19 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking nu-ansi-term v0.46.0 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking petgraph v0.8.2 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Compiling openssl-sys v0.9.109 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.82+curl-8.14.1 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Checking matchers v0.1.0 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking sharded-slab v0.1.7 [INFO] [stderr] Checking thread_local v1.1.8 [INFO] [stderr] Checking intervaltree v0.2.7 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking clap_lex v0.7.5 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking sha1_smol v1.0.1 [INFO] [stderr] Checking iana-time-zone v0.1.63 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking clap_builder v4.5.40 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Checking uuid v1.17.0 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking sysinfo v0.34.2 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking hp_tr_finder v0.2.3 [INFO] [stderr] Checking hp_tr_finder v0.3.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling tracing-attributes v0.1.29 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking yoke v0.8.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking zerotrie v0.2.2 [INFO] [stderr] Checking zerovec v0.11.2 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking tracing v0.1.41 [INFO] [stderr] Checking tinystr v0.8.1 [INFO] [stderr] Checking potential_utf v0.1.2 [INFO] [stderr] Checking icu_collections v2.0.0 [INFO] [stderr] Checking icu_locale_core v2.0.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking icu_provider v2.0.0 [INFO] [stderr] Checking icu_normalizer v2.0.0 [INFO] [stderr] Checking icu_properties v2.0.1 [INFO] [stderr] Checking clap v4.5.40 [INFO] [stderr] Checking minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking tracing-serde v0.2.0 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking tracing-subscriber v0.3.19 [INFO] [stderr] Checking tracing-appender v0.2.3 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v2.3.0 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking gskits v0.15.14 [INFO] [stderr] Checking mm2 v0.25.4 [INFO] [stderr] Checking gsmm2-metric v0.4.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `rev_part` [INFO] [stdout] --> src/metrics/hp_metric.rs:379:13 [INFO] [stdout] | [INFO] [stdout] 379 | let rev_part = &seq[1074..1074 + 100]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `target_seq` [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | let target_seq = targetname2seq [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_target_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rev_part` [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:418:13 [INFO] [stdout] | [INFO] [stdout] 418 | let rev_part = &seq[1074..1074 + 100]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 06s [INFO] running `Command { std: "docker" "inspect" "8081757e0c132ee46bed472994d9ae6cb9df8cd196b1a67593ec6b6fca40c08f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8081757e0c132ee46bed472994d9ae6cb9df8cd196b1a67593ec6b6fca40c08f", kill_on_drop: false }` [INFO] [stdout] 8081757e0c132ee46bed472994d9ae6cb9df8cd196b1a67593ec6b6fca40c08f