[INFO] fetching crate zoe 0.0.19... [INFO] checking zoe-0.0.19 against master#cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c for pr-143170 [INFO] extracting crate zoe 0.0.19 into /workspace/builds/worker-7-tc1/source [INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate zoe 0.0.19 [INFO] finished tweaking crates.io crate zoe 0.0.19 [INFO] tweaked toml for crates.io crate zoe 0.0.19 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate zoe 0.0.19 on toolchain cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate zoe 0.0.19 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rand_xoshiro v0.7.0 [INFO] [stderr] Downloaded target-features v0.1.6 [INFO] [stderr] Downloaded multiversion-macros v0.8.0 [INFO] [stderr] Downloaded derive_arbitrary v1.4.1 [INFO] [stderr] Downloaded multiversion v0.8.0 [INFO] [stderr] Downloaded syn v2.0.102 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0c8ca16a9f7016be269ab7b002eb0a213e2ab9a3e6800ebd712132bc936eaf92 [INFO] running `Command { std: "docker" "start" "-a" "0c8ca16a9f7016be269ab7b002eb0a213e2ab9a3e6800ebd712132bc936eaf92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0c8ca16a9f7016be269ab7b002eb0a213e2ab9a3e6800ebd712132bc936eaf92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0c8ca16a9f7016be269ab7b002eb0a213e2ab9a3e6800ebd712132bc936eaf92", kill_on_drop: false }` [INFO] [stdout] 0c8ca16a9f7016be269ab7b002eb0a213e2ab9a3e6800ebd712132bc936eaf92 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 65244dde687160591fc73842057e7eed35c8026b2b8c85bafaa9430dd697ad09 [INFO] running `Command { std: "docker" "start" "-a" "65244dde687160591fc73842057e7eed35c8026b2b8c85bafaa9430dd697ad09", kill_on_drop: false }` [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking rand_xoshiro v0.7.0 [INFO] [stderr] Checking zoe v0.0.19 (/opt/rustwide/workdir) [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_007362.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw.rs:499:42 [INFO] [stdout] | [INFO] [stdout] 499 | pub(crate) static REFERENCE: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_007362.1.txt")); // H5 HA [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_026433.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw.rs:500:38 [INFO] [stdout] | [INFO] [stdout] 500 | pub(crate) static QUERY: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_026433.1.txt")); // H1 HA1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw.rs:599:24 [INFO] [stdout] | [INFO] [stdout] 599 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw.rs:629:24 [INFO] [stdout] | [INFO] [stdout] 629 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile.rs:282:37 [INFO] [stdout] | [INFO] [stdout] 282 | pub(crate) static DATA: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, complete... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile_set.rs:495:24 [INFO] [stdout] | [INFO] [stdout] 495 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907623.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:5:40 [INFO] [stdout] | [INFO] [stdout] 5 | pub(crate) static LONG_READ_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907623.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:6:40 [INFO] [stdout] | [INFO] [stdout] 6 | pub(crate) static LONG_READ_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KP326324.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:12:33 [INFO] [stdout] | [INFO] [stdout] 12 | static MID_READ_GAPS_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KP326324.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KC684446.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:13:33 [INFO] [stdout] | [INFO] [stdout] 13 | static MID_READ_GAPS_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KC684446.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `zoe` (lib test) due to 10 previous errors [INFO] running `Command { std: "docker" "inspect" "65244dde687160591fc73842057e7eed35c8026b2b8c85bafaa9430dd697ad09", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "65244dde687160591fc73842057e7eed35c8026b2b8c85bafaa9430dd697ad09", kill_on_drop: false }` [INFO] [stdout] 65244dde687160591fc73842057e7eed35c8026b2b8c85bafaa9430dd697ad09