[INFO] fetching crate ska 0.4.0... [INFO] checking ska-0.4.0 against master#cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c for pr-143170 [INFO] extracting crate ska 0.4.0 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate ska 0.4.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate ska 0.4.0 [INFO] tweaked toml for crates.io crate ska 0.4.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ska 0.4.0 on toolchain cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ska 0.4.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snapbox v0.4.17 [INFO] [stderr] Downloaded snapbox-macros v0.3.10 [INFO] [stderr] Downloaded noodles-bgzf v0.26.0 [INFO] [stderr] Downloaded noodles-core v0.14.0 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded noodles-tabix v0.36.0 [INFO] [stderr] Downloaded seq_io v0.3.3 [INFO] [stderr] Downloaded noodles-csi v0.30.0 [INFO] [stderr] Downloaded argmin v0.9.0 [INFO] [stderr] Downloaded noodles-vcf v0.49.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1707c466787d8723ce0e76f9f0ea15343b97f58e5af7027e37d2d4ed00ddc108 [INFO] running `Command { std: "docker" "start" "-a" "1707c466787d8723ce0e76f9f0ea15343b97f58e5af7027e37d2d4ed00ddc108", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1707c466787d8723ce0e76f9f0ea15343b97f58e5af7027e37d2d4ed00ddc108", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1707c466787d8723ce0e76f9f0ea15343b97f58e5af7027e37d2d4ed00ddc108", kill_on_drop: false }` [INFO] [stdout] 1707c466787d8723ce0e76f9f0ea15343b97f58e5af7027e37d2d4ed00ddc108 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 049aa8f0fc38720d31eb45a2036f26e750ecfd430d3e25e7503c0aa8322bde67 [INFO] running `Command { std: "docker" "start" "-a" "049aa8f0fc38720d31eb45a2036f26e750ecfd430d3e25e7503c0aa8322bde67", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.16 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking once_cell v1.20.3 [INFO] [stderr] Compiling cc v1.2.13 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling syn v2.0.98 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking miniz_oxide v0.8.3 [INFO] [stderr] Checking crossbeam-channel v0.5.14 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking itoa v1.0.14 [INFO] [stderr] Compiling slog v2.7.0 [INFO] [stderr] Compiling time-macros v0.2.19 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Checking flate2 v1.0.35 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Checking log v0.4.25 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking dirs-sys-next v0.1.2 [INFO] [stderr] Checking hashbrown v0.15.2 [INFO] [stderr] Checking bytes v1.10.0 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling serde_json v1.0.138 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking indexmap v2.7.1 [INFO] [stderr] Checking dirs-next v2.0.0 [INFO] [stderr] Checking noodles-bgzf v0.26.0 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Checking time v0.3.37 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking thread_local v1.1.8 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking ryu v1.0.19 [INFO] [stderr] Compiling portable-atomic v1.10.0 [INFO] [stderr] Checking noodles-core v0.14.0 [INFO] [stderr] Compiling slog-async v2.8.0 [INFO] [stderr] Checking noodles-csi v0.30.0 [INFO] [stderr] Checking term v0.7.0 [INFO] [stderr] Checking is-terminal v0.4.15 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking bstr v1.11.3 [INFO] [stderr] Checking half v2.4.1 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Checking take_mut v0.2.2 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking unicode-width v0.2.0 [INFO] [stderr] Compiling getrandom v0.3.1 [INFO] [stderr] Checking bitflags v2.8.0 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking predicates-core v1.0.9 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking ciborium-io v0.2.2 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking parking_lot_core v0.9.10 [INFO] [stderr] Checking clap_builder v4.5.27 [INFO] [stderr] Checking console v0.15.10 [INFO] [stderr] Checking colored v2.2.0 [INFO] [stderr] Checking globset v0.4.15 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Checking slog-term v2.9.1 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking noodles-tabix v0.36.0 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking instant v0.1.13 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking linux-raw-sys v0.4.15 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking difflib v0.4.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking noodles-vcf v0.49.0 [INFO] [stderr] Checking needletail v0.5.1 [INFO] [stderr] Checking ignore v0.4.23 [INFO] [stderr] Checking simple_logger v4.3.3 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Checking normalize-line-endings v0.3.0 [INFO] [stderr] Checking fastrand v2.3.0 [INFO] [stderr] Checking termtree v0.5.1 [INFO] [stderr] Checking predicates v3.1.3 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking predicates-tree v1.0.12 [INFO] [stderr] Checking snapbox-macros v0.3.10 [INFO] [stderr] Checking float-cmp v0.9.0 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking yansi v1.0.1 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling clap_derive v4.5.28 [INFO] [stderr] Checking globwalk v0.9.1 [INFO] [stderr] Checking diff v0.1.13 [INFO] [stderr] Checking similar v2.7.0 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking pretty_assertions v1.4.1 [INFO] [stderr] Checking predicates v2.1.5 [INFO] [stderr] Checking tempfile v3.16.0 [INFO] [stderr] Checking snapbox v0.4.17 [INFO] [stderr] Checking assert_fs v1.1.2 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking clap v4.5.28 [INFO] [stderr] Checking dashmap v6.1.0 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking seq_io v0.3.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_xoshiro v0.6.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking slog-json v2.6.1 [INFO] [stderr] Checking argmin-math v0.3.0 [INFO] [stderr] Checking argmin v0.9.0 [INFO] [stderr] Checking ska v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/ska_ref.rs:344:24 [INFO] [stdout] | [INFO] [stdout] 344 | fn pseudoalignment(&self, threads: usize) -> Vec { [INFO] [stdout] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 344 | fn pseudoalignment(&self, threads: usize) -> Vec> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/merge_ska_array.rs:553:17 [INFO] [stdout] | [INFO] [stdout] 553 | pub fn iter(&self) -> KmerIter { [INFO] [stdout] | ^^^^^ -------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 553 | pub fn iter(&self) -> KmerIter<'_, IntT> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/ska_ref.rs:344:24 [INFO] [stdout] | [INFO] [stdout] 344 | fn pseudoalignment(&self, threads: usize) -> Vec { [INFO] [stdout] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 344 | fn pseudoalignment(&self, threads: usize) -> Vec> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/merge_ska_array.rs:553:17 [INFO] [stdout] | [INFO] [stdout] 553 | pub fn iter(&self) -> KmerIter { [INFO] [stdout] | ^^^^^ -------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 553 | pub fn iter(&self) -> KmerIter<'_, IntT> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s [INFO] running `Command { std: "docker" "inspect" "049aa8f0fc38720d31eb45a2036f26e750ecfd430d3e25e7503c0aa8322bde67", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "049aa8f0fc38720d31eb45a2036f26e750ecfd430d3e25e7503c0aa8322bde67", kill_on_drop: false }` [INFO] [stdout] 049aa8f0fc38720d31eb45a2036f26e750ecfd430d3e25e7503c0aa8322bde67