[INFO] fetching crate d4-hts 0.3.9... [INFO] checking d4-hts-0.3.9 against master#cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c for pr-143170 [INFO] extracting crate d4-hts 0.3.9 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate d4-hts 0.3.9 [INFO] finished tweaking crates.io crate d4-hts 0.3.9 [INFO] tweaked toml for crates.io crate d4-hts 0.3.9 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate d4-hts 0.3.9 on toolchain cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 62 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.55.1 (available: v0.72.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 996066d4cb7520734c889086a3d95db4d5739686b9f0a2964ea25f08f6134389 [INFO] running `Command { std: "docker" "start" "-a" "996066d4cb7520734c889086a3d95db4d5739686b9f0a2964ea25f08f6134389", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "996066d4cb7520734c889086a3d95db4d5739686b9f0a2964ea25f08f6134389", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "996066d4cb7520734c889086a3d95db4d5739686b9f0a2964ea25f08f6134389", kill_on_drop: false }` [INFO] [stdout] 996066d4cb7520734c889086a3d95db4d5739686b9f0a2964ea25f08f6134389 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8c820f685f4fc1de2ecd72ba105f38942589a2fab0a66e512530a5fa36c3e452 [INFO] running `Command { std: "docker" "start" "-a" "8c820f685f4fc1de2ecd72ba105f38942589a2fab0a66e512530a5fa36c3e452", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling cfg-if v1.0.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.3.9 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.3.9 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-7cd566dd4a51af18/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-3674310316fd03b8/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-3674310316fd03b8/out/htslib [INFO] [stderr] + git clone -b 1.11 http://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'http://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at build.rs:34:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5c5d6a3e7852 - std::backtrace_rs::backtrace::libunwind::trace::h78562a013ab6f1d1 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5c5d6a3e7852 - std::backtrace_rs::backtrace::trace_unsynchronized::h77ced773b5be47e3 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5c5d6a3e7852 - std::sys::backtrace::_print_fmt::hd8554b653175eb90 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5c5d6a3e7852 - ::fmt::h0ee684fa48ea65a9 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5c5d6a40e473 - core::fmt::rt::Argument::fmt::h97dc4aa34475380b [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5c5d6a40e473 - core::fmt::write::ha7e9dac23b0574fc [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/core/src/fmt/mod.rs:1465:25 [INFO] [stderr] 6: 0x5c5d6a3e48a3 - std::io::default_write_fmt::hdebc07c8b1ed24d8 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5c5d6a3e48a3 - std::io::Write::write_fmt::h74c2ee93ac2161e6 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5c5d6a3e76a2 - std::sys::backtrace::BacktraceLock::print::h5d2ec0ae212b38da [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5c5d6a3e8c56 - std::panicking::default_hook::{{closure}}::h919f804d261dd9ce [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:300:27 [INFO] [stderr] 10: 0x5c5d6a3e8a59 - std::panicking::default_hook::h96273494815ab2d6 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x5c5d6a3e9662 - std::panicking::rust_panic_with_hook::hd760048b5d2d6151 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x5c5d6a3e93c6 - std::panicking::begin_panic_handler::{{closure}}::h040646f2e9c9f682 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:699:13 [INFO] [stderr] 13: 0x5c5d6a3e7d59 - std::sys::backtrace::__rust_end_short_backtrace::h6a810defc53f5213 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/sys/backtrace.rs:168:18 [INFO] [stderr] 14: 0x5c5d6a3e908d - __rustc[d0903a379a499752]::rust_begin_unwind [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x5c5d6a40c7d0 - core::panicking::panic_fmt::hdb4e2ff26c68ec1f [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5c5d6a40c83c - core::panicking::panic::h249cef7c7fe3ec09 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/core/src/panicking.rs:145:5 [INFO] [stderr] 17: 0x5c5d69ef77f4 - build_script_build::build_own_htslib::h261992805b6289c0 [INFO] [stderr] 18: 0x5c5d69ef7c71 - build_script_build::main::h1f5c5dd9f9a5d62f [INFO] [stderr] 19: 0x5c5d69ef4bf3 - core::ops::function::FnOnce::call_once::hae61c66230e7a804 [INFO] [stderr] 20: 0x5c5d69ef4906 - std::sys::backtrace::__rust_begin_short_backtrace::h7ad052bfea0a2978 [INFO] [stderr] 21: 0x5c5d69ef48e9 - std::rt::lang_start::{{closure}}::he9f6997f855edbe4 [INFO] [stderr] 22: 0x5c5d6a3dff40 - core::ops::function::impls:: for &F>::call_once::hc0a003771d36ce49 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/core/src/ops/function.rs:284:21 [INFO] [stderr] 23: 0x5c5d6a3dff40 - std::panicking::catch_unwind::do_call::h9858643921646d98 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:589:40 [INFO] [stderr] 24: 0x5c5d6a3dff40 - std::panicking::catch_unwind::h8c86187d9aa365e4 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:552:19 [INFO] [stderr] 25: 0x5c5d6a3dff40 - std::panic::catch_unwind::h7fb0f60cd1f7dbc8 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x5c5d6a3dff40 - std::rt::lang_start_internal::{{closure}}::he8bf7dae0379adc7 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x5c5d6a3dff40 - std::panicking::catch_unwind::do_call::h14a6a5289a8309e6 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:589:40 [INFO] [stderr] 28: 0x5c5d6a3dff40 - std::panicking::catch_unwind::h324e7e057c6492a0 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panicking.rs:552:19 [INFO] [stderr] 29: 0x5c5d6a3dff40 - std::panic::catch_unwind::h707fe61980e924ea [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x5c5d6a3dff40 - std::rt::lang_start_internal::hc492c42d25e8d5e6 [INFO] [stderr] at /rustc/cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x5c5d69ef48d1 - std::rt::lang_start::hbddb9f9179e9f2bc [INFO] [stderr] 32: 0x5c5d69ef82e5 - main [INFO] [stderr] 33: 0x7a621037b1ca - [INFO] [stderr] 34: 0x7a621037b28b - __libc_start_main [INFO] [stderr] 35: 0x5c5d69ef3d85 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8c820f685f4fc1de2ecd72ba105f38942589a2fab0a66e512530a5fa36c3e452", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8c820f685f4fc1de2ecd72ba105f38942589a2fab0a66e512530a5fa36c3e452", kill_on_drop: false }` [INFO] [stdout] 8c820f685f4fc1de2ecd72ba105f38942589a2fab0a66e512530a5fa36c3e452