[INFO] cloning repository https://github.com/stela2502/subset_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/subset_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd868415f9aea0adfe6d6ed220dd26c3a1376a15
[INFO] checking stela2502/subset_bam against master#cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c for pr-143170
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/subset_bam
[INFO] finished tweaking git repo https://github.com/stela2502/subset_bam
[INFO] tweaked toml for git repo https://github.com/stela2502/subset_bam written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/subset_bam on toolchain cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/subset_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded clap v4.5.29
[INFO] [stderr]   Downloaded cc v1.2.14
[INFO] [stderr]   Downloaded clap_builder v4.5.29
[INFO] [stderr]   Downloaded bzip2-sys v0.1.12+1.0.8
[INFO] [stderr]   Downloaded libz-sys v1.1.21
[INFO] [stderr]   Downloaded curl-sys v0.4.79+curl-8.12.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.4.2+3.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8ecd78862431ea0a1b962e79df16233743fbec4e1256443051377b21b5351d32
[INFO] running `Command { std: "docker" "start" "-a" "8ecd78862431ea0a1b962e79df16233743fbec4e1256443051377b21b5351d32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8ecd78862431ea0a1b962e79df16233743fbec4e1256443051377b21b5351d32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ecd78862431ea0a1b962e79df16233743fbec4e1256443051377b21b5351d32", kill_on_drop: false }`
[INFO] [stdout] 8ecd78862431ea0a1b962e79df16233743fbec4e1256443051377b21b5351d32
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3c25e6be0ae68b9eaece89d56d9c3f041919536eea3866eeead73b708c51f283
[INFO] running `Command { std: "docker" "start" "-a" "3c25e6be0ae68b9eaece89d56d9c3f041919536eea3866eeead73b708c51f283", kill_on_drop: false }`
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v2.8.0
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling rustversion v1.0.19
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling syn v2.0.98
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]     Checking anstream v0.6.18
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking clap_builder v4.5.29
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling cc v1.2.14
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.4.2+3.4.1
[INFO] [stderr]    Compiling openssl-sys v0.9.105
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.79+curl-8.12.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.12+1.0.8
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.5
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling clap_derive v4.5.28
[INFO] [stderr]     Checking zerofrom v0.1.5
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]     Checking clap v4.5.29
[INFO] [stderr]     Checking tinystr v0.7.6
[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]     Checking multi_subset_bam v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> tests/test_program.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bam::Writer`
[INFO] [stdout]  --> src/main.rs:4:35
[INFO] [stdout]   |
[INFO] [stdout] 4 | use rust_htslib::{bam, bam::Read, bam::Writer};
[INFO] [stdout]   |                                   ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/main.rs:5:20
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::{self,File};
[INFO] [stdout]   |                    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufWriter`
[INFO] [stdout]  --> src/main.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::BufWriter;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::PathBuf`
[INFO] [stdout]   --> src/main.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::path::PathBuf;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bam::Writer`
[INFO] [stdout]  --> src/main.rs:4:35
[INFO] [stdout]   |
[INFO] [stdout] 4 | use rust_htslib::{bam, bam::Read, bam::Writer};
[INFO] [stdout]   |                                   ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/main.rs:5:20
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::{self,File};
[INFO] [stdout]   |                    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufWriter`
[INFO] [stdout]  --> src/main.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::BufWriter;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::PathBuf`
[INFO] [stdout]   --> src/main.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::path::PathBuf;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 42s
[INFO] running `Command { std: "docker" "inspect" "3c25e6be0ae68b9eaece89d56d9c3f041919536eea3866eeead73b708c51f283", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c25e6be0ae68b9eaece89d56d9c3f041919536eea3866eeead73b708c51f283", kill_on_drop: false }`
[INFO] [stdout] 3c25e6be0ae68b9eaece89d56d9c3f041919536eea3866eeead73b708c51f283