[INFO] cloning repository https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/near-linear-cophenetic-distance" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 84a6addfda4fe5747c1334a5459a4d586965c2ea
[INFO] checking sriram98v/near-linear-cophenetic-distance against master#cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c for pr-143170
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] finished tweaking git repo https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] tweaked toml for git repo https://github.com/sriram98v/near-linear-cophenetic-distance written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sriram98v/near-linear-cophenetic-distance on toolchain cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sriram98v/near-linear-cophenetic-distance already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded terminal_size v0.3.0
[INFO] [stderr]   Downloaded divan-macros v0.1.14
[INFO] [stderr]   Downloaded condtype v1.3.0
[INFO] [stderr]   Downloaded regex-lite v0.1.6
[INFO] [stderr]   Downloaded clap v4.5.9
[INFO] [stderr]   Downloaded vers-vecs v1.5.1
[INFO] [stderr]   Downloaded clap_builder v4.5.9
[INFO] [stderr]   Downloaded divan v0.1.14
[INFO] [stderr]   Downloaded phylo v1.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] aa4743e333d5e24524fac45efb15ae768b3b12089d0d013025f246c17865eeae
[INFO] running `Command { std: "docker" "start" "-a" "aa4743e333d5e24524fac45efb15ae768b3b12089d0d013025f246c17865eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa4743e333d5e24524fac45efb15ae768b3b12089d0d013025f246c17865eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa4743e333d5e24524fac45efb15ae768b3b12089d0d013025f246c17865eeae", kill_on_drop: false }`
[INFO] [stdout] aa4743e333d5e24524fac45efb15ae768b3b12089d0d013025f246c17865eeae
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+cf38b8e663f15db10ce49d7bbce02c99fc3dbc0c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] bd2ced3e025fa5337d8bd6980bdabe5794ab9abfd9cfee6603f1fee159f3b121
[INFO] running `Command { std: "docker" "start" "-a" "bd2ced3e025fa5337d8bd6980bdabe5794ab9abfd9cfee6603f1fee159f3b121", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking bitflags v2.6.0
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking anstyle-query v1.1.0
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking clap_lex v0.7.1
[INFO] [stderr]    Compiling thiserror v1.0.68
[INFO] [stderr]     Checking unicode-width v0.1.13
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking portable-atomic v1.6.0
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking terminal_size v0.3.0
[INFO] [stderr]     Checking vers-vecs v1.5.1
[INFO] [stderr]    Compiling syn v2.0.87
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking clap_builder v4.5.9
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]     Checking indicatif v0.17.8
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking condtype v1.3.0
[INFO] [stderr]     Checking regex-lite v0.1.6
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking clap v4.5.9
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.68
[INFO] [stderr]    Compiling divan-macros v0.1.14
[INFO] [stderr]     Checking divan v0.1.14
[INFO] [stderr]     Checking phylo v1.2.0
[INFO] [stderr]     Checking nlcd v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/nlcd.rs:11:17
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::time::{Duration, Instant};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/nlcd.rs:11:17
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::time::{Duration, Instant};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `weighted`
[INFO] [stdout]    --> src/bin/nlcd.rs:398:17
[INFO] [stdout]     |
[INFO] [stdout] 398 |             let weighted = sub_m.get_one::<bool>("weighted").expect("weighted required");
[INFO] [stdout]     |                 ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_weighted`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `weighted`
[INFO] [stdout]    --> src/bin/nlcd.rs:398:17
[INFO] [stdout]     |
[INFO] [stdout] 398 |             let weighted = sub_m.get_one::<bool>("weighted").expect("weighted required");
[INFO] [stdout]     |                 ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_weighted`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:299:82
[INFO] [stdout]     |
[INFO] [stdout] 299 |             let taxa_set: HashSet<_> = binding1.intersection(&binding2).map(|x| x.clone().clone()).collect();
[INFO] [stdout]     |                                                                                  ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:323:52
[INFO] [stdout]     |
[INFO] [stdout] 323 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:329:52
[INFO] [stdout]     |
[INFO] [stdout] 329 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:384:82
[INFO] [stdout]     |
[INFO] [stdout] 384 |             let taxa_set: HashSet<_> = binding1.intersection(&binding2).map(|x| x.clone().clone()).collect();
[INFO] [stdout]     |                                                                                  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:408:52
[INFO] [stdout]     |
[INFO] [stdout] 408 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:414:52
[INFO] [stdout]     |
[INFO] [stdout] 414 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:470:82
[INFO] [stdout]     |
[INFO] [stdout] 470 |             let taxa_set: HashSet<_> = binding1.intersection(&binding2).map(|x| x.clone().clone()).collect();
[INFO] [stdout]     |                                                                                  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:492:52
[INFO] [stdout]     |
[INFO] [stdout] 492 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&u32` instead of cloning the inner type
[INFO] [stdout]    --> benches/main.rs:498:52
[INFO] [stdout]     |
[INFO] [stdout] 498 |                     .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.80s
[INFO] running `Command { std: "docker" "inspect" "bd2ced3e025fa5337d8bd6980bdabe5794ab9abfd9cfee6603f1fee159f3b121", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bd2ced3e025fa5337d8bd6980bdabe5794ab9abfd9cfee6603f1fee159f3b121", kill_on_drop: false }`
[INFO] [stdout] bd2ced3e025fa5337d8bd6980bdabe5794ab9abfd9cfee6603f1fee159f3b121