[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c537c911efb519f10579a1dab8612025edf0c1ad
[INFO] checking Adoni5/cnv_from_bam against master#36b21637e93b038453924d3c66821089e71d8baa for pr-143164
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain 36b21637e93b038453924d3c66821089e71d8baa
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36b21637e93b038453924d3c66821089e71d8baa" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36b21637e93b038453924d3c66821089e71d8baa" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 104 packages to latest Rust 1.90.0-nightly compatible versions
[INFO] [stderr]       Adding noodles v0.99.0 (available: v0.100.0)
[INFO] [stderr]       Adding noodles-bgzf v0.41.0 (available: v0.42.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36b21637e93b038453924d3c66821089e71d8baa" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded pyo3-macros v0.25.1
[INFO] [stderr]   Downloaded pyo3-build-config v0.25.1
[INFO] [stderr]   Downloaded redox_syscall v0.5.17
[INFO] [stderr]   Downloaded windows-targets v0.53.3
[INFO] [stderr]   Downloaded ctrlc v3.4.7
[INFO] [stderr]   Downloaded console v0.16.0
[INFO] [stderr]   Downloaded noodles-csi v0.49.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.5
[INFO] [stderr]   Downloaded lexical-util v1.0.6
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.5
[INFO] [stderr]   Downloaded indicatif v0.18.0
[INFO] [stderr]   Downloaded lexical-core v1.0.5
[INFO] [stderr]   Downloaded noodles-bam v0.81.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.5
[INFO] [stderr]   Downloaded noodles-sam v0.77.0
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.5
[INFO] [stderr]   Downloaded zlib-rs v0.5.1
[INFO] [stderr]   Downloaded libdeflate-sys v1.24.0
[INFO] [stderr]   Downloaded unit-prefix v0.5.1
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded noodles v0.99.0
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.1
[INFO] [stderr]   Downloaded libdeflater v1.24.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.25.1
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.25.1
[INFO] [stderr]   Downloaded natord v1.0.9
[INFO] [stderr]   Downloaded target-lexicon v0.13.2
[INFO] [stderr]   Downloaded pyo3 v0.25.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.41.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+36b21637e93b038453924d3c66821089e71d8baa" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c6226acf28c2c427252b24cd08ec3d26aa6ea69b5b370e8c50139e1f64755227
[INFO] running `Command { std: "docker" "start" "-a" "c6226acf28c2c427252b24cd08ec3d26aa6ea69b5b370e8c50139e1f64755227", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c6226acf28c2c427252b24cd08ec3d26aa6ea69b5b370e8c50139e1f64755227", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c6226acf28c2c427252b24cd08ec3d26aa6ea69b5b370e8c50139e1f64755227", kill_on_drop: false }`
[INFO] [stdout] c6226acf28c2c427252b24cd08ec3d26aa6ea69b5b370e8c50139e1f64755227
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+36b21637e93b038453924d3c66821089e71d8baa" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cad316033067e6140f9831d18f024d8947128e02fd66b773b6a7cfe92dfd09dc
[INFO] running `Command { std: "docker" "start" "-a" "cad316033067e6140f9831d18f024d8947128e02fd66b773b6a7cfe92dfd09dc", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.2
[INFO] [stderr]     Checking cfg-if v1.0.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]     Checking zlib-rs v0.5.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]     Checking memchr v2.7.5
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking equivalent v1.0.2
[INFO] [stderr]     Checking lexical-util v1.0.6
[INFO] [stderr]     Checking hashbrown v0.15.4
[INFO] [stderr]     Checking bitflags v2.9.1
[INFO] [stderr]     Checking bytes v1.10.1
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling cc v1.2.30
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking unicode-width v0.2.1
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking indexmap v2.10.0
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]     Checking unit-prefix v0.5.1
[INFO] [stderr]     Checking natord v1.0.9
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking log v0.4.27
[INFO] [stderr]     Checking lexical-write-integer v1.0.5
[INFO] [stderr]     Checking lexical-parse-integer v1.0.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]     Checking lexical-parse-float v1.0.5
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking lexical-write-float v1.0.5
[INFO] [stderr]     Checking bstr v1.12.0
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking noodles-core v0.17.0
[INFO] [stderr]    Compiling libdeflate-sys v1.24.0
[INFO] [stderr]     Checking lexical-core v1.0.5
[INFO] [stderr]     Checking libz-rs-sys v0.5.1
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]     Checking console v0.16.0
[INFO] [stderr]     Checking indicatif v0.18.0
[INFO] [stderr]     Checking ctrlc v3.4.7
[INFO] [stderr]     Checking libdeflater v1.24.0
[INFO] [stderr]     Checking noodles-bgzf v0.41.0
[INFO] [stderr]     Checking noodles-csi v0.49.0
[INFO] [stderr]     Checking noodles-sam v0.77.0
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]     Checking noodles-bam v0.81.0
[INFO] [stderr]     Checking noodles v0.99.0
[INFO] [stderr]     Checking cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.46s
[INFO] running `Command { std: "docker" "inspect" "cad316033067e6140f9831d18f024d8947128e02fd66b773b6a7cfe92dfd09dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cad316033067e6140f9831d18f024d8947128e02fd66b773b6a7cfe92dfd09dc", kill_on_drop: false }`
[INFO] [stdout] cad316033067e6140f9831d18f024d8947128e02fd66b773b6a7cfe92dfd09dc
