[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1b99116de888026854a0e07b5d5b55c602827592
[INFO] checking informationsea/sequencetoolkit against master#d14d202262d13df896b0c624b0cec6e4bfde631a for pr-143028
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain d14d202262d13df896b0c624b0cec6e4bfde631a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d14d202262d13df896b0c624b0cec6e4bfde631a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d14d202262d13df896b0c624b0cec6e4bfde631a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded xlsxwriter v0.6.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded humantime v1.3.0
[INFO] [stderr]   Downloaded env_logger v0.7.1
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded safe_arch v0.7.2
[INFO] [stderr]   Downloaded flate2 v1.0.31
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded wide v0.7.26
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded clap_builder v4.5.13
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded bindgen v0.69.4
[INFO] [stderr]   Downloaded bytemuck v1.16.3
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded object v0.36.2
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.3
[INFO] [stderr]   Downloaded lexical-core v0.7.6
[INFO] [stderr]   Downloaded itertools v0.9.0
[INFO] [stderr]   Downloaded pretty_env_logger v0.4.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded temp-file v0.1.8
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded clap v4.5.13
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded libz-sys v1.1.18
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.7
[INFO] [stderr]   Downloaded tokio v1.39.2
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] [stderr]   Downloaded openssl-src v300.3.1+3.3.1
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+d14d202262d13df896b0c624b0cec6e4bfde631a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f5bdca4dd020581630b646569b3e126b51503e06d35c9d1630340ecac160b232
[INFO] running `Command { std: "docker" "start" "-a" "f5bdca4dd020581630b646569b3e126b51503e06d35c9d1630340ecac160b232", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f5bdca4dd020581630b646569b3e126b51503e06d35c9d1630340ecac160b232", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5bdca4dd020581630b646569b3e126b51503e06d35c9d1630340ecac160b232", kill_on_drop: false }`
[INFO] [stdout] f5bdca4dd020581630b646569b3e126b51503e06d35c9d1630340ecac160b232
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+d14d202262d13df896b0c624b0cec6e4bfde631a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 60fa719dec9ddd274813ed991c14a8e1201427f3a17bb38034fc680dba44ab7e
[INFO] running `Command { std: "docker" "start" "-a" "60fa719dec9ddd274813ed991c14a8e1201427f3a17bb38034fc680dba44ab7e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking miniz_oxide v0.7.4
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking clap_builder v4.5.13
[INFO] [stderr]     Checking tokio v1.39.2
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking bytemuck v1.16.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]     Checking flate2 v1.0.31
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking wide v0.7.26
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling prettyplease v0.2.20
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking indexmap v2.3.0
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling cc v1.1.7
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling libloading v0.8.5
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking unicode-normalization v0.1.23
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking unicode-bidi v0.3.15
[INFO] [stderr]    Compiling openssl-src v300.3.1+3.3.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/d14d202262d13df896b0c624b0cec6e4bfde631a/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.72/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=732e1977034d7d2d -C extra-filename=-c7471c3c40da177b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-90f4d189e3c1781a.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-ea54d792119c380c.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-f2de522ba645d884.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "60fa719dec9ddd274813ed991c14a8e1201427f3a17bb38034fc680dba44ab7e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "60fa719dec9ddd274813ed991c14a8e1201427f3a17bb38034fc680dba44ab7e", kill_on_drop: false }`
[INFO] [stdout] 60fa719dec9ddd274813ed991c14a8e1201427f3a17bb38034fc680dba44ab7e