[INFO] cloning repository https://github.com/biodatageeks/polars-bio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biodatageeks/polars-bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio'... [INFO] [stderr] /workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio/objects/info: No space left on device [WARN] Retrying crate fetch in 3 seconds (attempt 1) [INFO] cloning repository https://github.com/biodatageeks/polars-bio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biodatageeks/polars-bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio'... [INFO] [stderr] fatal: write error: No space left on device [INFO] [stderr] fatal: fetch-pack: invalid index-pack output [WARN] Retrying crate fetch in 3 seconds (attempt 2) [INFO] cloning repository https://github.com/biodatageeks/polars-bio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biodatageeks/polars-bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio'... [INFO] [stderr] fatal: write error: No space left on device [INFO] [stderr] fatal: fetch-pack: invalid index-pack output [WARN] Retrying crate fetch in 3 seconds (attempt 3) [INFO] cloning repository https://github.com/biodatageeks/polars-bio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biodatageeks/polars-bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio'... [INFO] [stderr] fatal: write error: No space left on device [INFO] [stderr] fatal: fetch-pack: invalid index-pack output [WARN] Retrying crate fetch in 3 seconds (attempt 4) [INFO] cloning repository https://github.com/biodatageeks/polars-bio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biodatageeks/polars-bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c6a6500b582cf284b65558d02f2b513e5373770e [INFO] checking biodatageeks/polars-bio against try#2b39fe756f52bc2825bf5b2bfc385cab922dae10 for pr-143011 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] finished tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] tweaked toml for git repo https://github.com/biodatageeks/polars-bio written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/biodatageeks/polars-bio on toolchain 2b39fe756f52bc2825bf5b2bfc385cab922dae10 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/biodatageeks/polars-bio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git submodule `https://github.com/apache/parquet-testing.git` [INFO] [stderr] Updating git submodule `https://github.com/apache/arrow-testing.git` [INFO] [stderr] warning: spurious network error (3 tries remaining): cannot extend packfile '/workspace/cargo-home/git/checkouts/datafusion-python-69ed15285f625a3f/5c83493/testing/.git/objects/pack/pack_git2_f985592aafe41b0f': No space left on device; class=Os (2) [INFO] [stderr] warning: spurious network error (2 tries remaining): cannot extend packfile '/workspace/cargo-home/git/checkouts/datafusion-python-69ed15285f625a3f/5c83493/testing/.git/objects/pack/pack_git2_de6c07c6b013d05e': No space left on device; class=Os (2) [INFO] [stderr] warning: spurious network error (1 try remaining): cannot extend packfile '/workspace/cargo-home/git/checkouts/datafusion-python-69ed15285f625a3f/5c83493/testing/.git/objects/pack/pack_git2_89663152c1bd69c0': No space left on device; class=Os (2) [INFO] [stderr] error: failed to get `datafusion-python` as a dependency of package `polars_bio v0.10.3 (/workspace/builds/worker-6-tc2/source)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to load source for dependency `datafusion-python` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] Unable to update https://github.com/apache/datafusion-python.git?rev=5c834934dec89bd96ff70df3b278e9d6fe78f7ec#5c834934 [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to update submodule `testing` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to fetch submodule `testing` from https://github.com/apache/arrow-testing.git [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] revision 5bab2f264a23f5af68f69ea93d24ef1e8e77fc88 not found [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] cannot extend packfile '/workspace/cargo-home/git/checkouts/datafusion-python-69ed15285f625a3f/5c83493/testing/.git/objects/pack/pack_git2_30492f5527ac0c43': No space left on device; class=Os (2) [INFO] checking biodatageeks/polars-bio against try#2b39fe756f52bc2825bf5b2bfc385cab922dae10 for pr-143011 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] finished tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] tweaked toml for git repo https://github.com/biodatageeks/polars-bio written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/biodatageeks/polars-bio on toolchain 2b39fe756f52bc2825bf5b2bfc385cab922dae10 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/biodatageeks/polars-bio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git submodule `https://github.com/apache/parquet-testing.git` [INFO] [stderr] warning: spurious network error (3 tries remaining): cannot extend packfile '/workspace/cargo-home/git/checkouts/datafusion-python-69ed15285f625a3f/5c83493/parquet/.git/objects/pack/pack_git2_41c629045327539b': No space left on device; class=Os (2) [INFO] [stderr] Updating git submodule `https://github.com/apache/arrow-testing.git` [INFO] [stderr] Updating git repository `https://github.com/mwiewior/exon.git` [INFO] [stderr] warning: spurious network error (3 tries remaining): cannot extend packfile '/workspace/cargo-home/git/db/exon-1fad732bd9250d69/objects/pack/pack_git2_d0087c5f916543d5': No space left on device; class=Os (2) [INFO] [stderr] error: failed to get `exon` as a dependency of package `polars_bio v0.10.3 (/workspace/builds/worker-6-tc2/source)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to load source for dependency `exon` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] Unable to update https://github.com/mwiewior/exon.git?rev=d134d923e6c592a9972d93215a12c759c70a7ed5#d134d923 [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] could not write to '/workspace/cargo-home/git/checkouts/exon-1fad732bd9250d69/d134d92/exon/exon-core/test-data/datasources/bigger-index/test.vcf.gz': No space left on device; class=Os (2) [INFO] checking biodatageeks/polars-bio against try#2b39fe756f52bc2825bf5b2bfc385cab922dae10 for pr-143011 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] finished tweaking git repo https://github.com/biodatageeks/polars-bio [INFO] tweaked toml for git repo https://github.com/biodatageeks/polars-bio written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/biodatageeks/polars-bio on toolchain 2b39fe756f52bc2825bf5b2bfc385cab922dae10 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/biodatageeks/polars-bio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2b39fe756f52bc2825bf5b2bfc385cab922dae10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] error: failed to get `exon` as a dependency of package `polars_bio v0.10.3 (/workspace/builds/worker-6-tc2/source)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to load source for dependency `exon` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] Unable to update https://github.com/mwiewior/exon.git?rev=d134d923e6c592a9972d93215a12c759c70a7ed5#d134d923 [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] could not write to '/workspace/cargo-home/git/checkouts/exon-1fad732bd9250d69/d134d92/exon/exon-core/test-data/datasources/bigger-index/test.vcf.gz': No space left on device; class=Os (2) [INFO] checking biodatageeks/polars-bio against try#2b39fe756f52bc2825bf5b2bfc385cab922dae10 for pr-143011 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] error: unable to write file tests/data/io/fastq/example.fastq [INFO] [stderr] error: unable to write file tests/data/io/fastq/example.fastq.bgz [INFO] [stderr] error: unable to write file tests/data/io/fastq/example.fastq.gz [INFO] [stderr] error: unable to write file tests/data/io/fastq/test.fastq [INFO] [stderr] error: unable to write file tests/data/io/fastq/wrong_extension.fastq.gz [INFO] [stderr] fatal: cannot create directory at 'tests/data/io/gff': No space left on device [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking biodatageeks/polars-bio against try#2b39fe756f52bc2825bf5b2bfc385cab922dae10 for pr-143011 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiodatageeks%2Fpolars-bio" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] error: unable to write file tests/data/exons/part-00000-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet [INFO] [stderr] error: unable to write file tests/data/exons/part-00001-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet [INFO] [stderr] fatal: cannot create directory at 'tests/data/fBrain-DS14718': No space left on device [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] failed to checkout https://github.com/biodatageeks/polars-bio Caused by: command failed: exit status: 128