[INFO] cloning repository https://github.com/JamesKane/DecodingUsTools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/JamesKane/DecodingUsTools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJamesKane%2FDecodingUsTools", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 07b5853bcc15aef1cfcaa4a9403988cc5f4b4e9c
[INFO] checking JamesKane/DecodingUsTools against try#1f5783cbeb5da8b38566d718631d016891e9c912 for pr-142704
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJamesKane%2FDecodingUsTools" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
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[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/JamesKane/DecodingUsTools on toolchain 1f5783cbeb5da8b38566d718631d016891e9c912
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[INFO] crate git repo https://github.com/JamesKane/DecodingUsTools already has a lockfile, it will not be regenerated
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[INFO] [stdout] warning: unused import: `std::io::Write`
[INFO] [stdout]   --> src/callable_loci/mod.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::io::Write;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Write`
[INFO] [stdout]   --> src/callable_loci/mod.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::io::Write;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `depth`
[INFO] [stdout]    --> src/haplogroup/mod.rs:153:40
[INFO] [stdout]     |
[INFO] [stdout] 153 |                     Some((called_base, depth, freq)) => {
[INFO] [stdout]     |                                        ^^^^^ help: if this is intentional, prefix it with an underscore: `_depth`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `freq`
[INFO] [stdout]    --> src/haplogroup/mod.rs:153:47
[INFO] [stdout]     |
[INFO] [stdout] 153 |                     Some((called_base, depth, freq)) => {
[INFO] [stdout]     |                                               ^^^^ help: if this is intentional, prefix it with an underscore: `_freq`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `depth`
[INFO] [stdout]    --> src/haplogroup/mod.rs:153:40
[INFO] [stdout]     |
[INFO] [stdout] 153 |                     Some((called_base, depth, freq)) => {
[INFO] [stdout]     |                                        ^^^^^ help: if this is intentional, prefix it with an underscore: `_depth`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `freq`
[INFO] [stdout]    --> src/haplogroup/mod.rs:153:47
[INFO] [stdout]     |
[INFO] [stdout] 153 |                     Some((called_base, depth, freq)) => {
[INFO] [stdout]     |                                               ^^^^ help: if this is intentional, prefix it with an underscore: `_freq`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]   --> src/utils/sequence_processor.rs:39:39
[INFO] [stdout]    |
[INFO] [stdout] 39 |         fn merge_processor(&mut self, other: &Self) -> Result<()> {
[INFO] [stdout]    |                                       ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `progress`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:114:13
[INFO] [stdout]     |
[INFO] [stdout] 114 |             progress: &ProgressBar,
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_progress`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `thread_id`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:304:17
[INFO] [stdout]     |
[INFO] [stdout] 304 |             for thread_id in 0..num_threads {
[INFO] [stdout]     |                 ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thread_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:311:36
[INFO] [stdout]     |
[INFO] [stdout] 311 |                         if let Err(e) = worker_processor.process_sequence(&sequence) {
[INFO] [stdout]     |                                    ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]   --> src/utils/sequence_processor.rs:39:39
[INFO] [stdout]    |
[INFO] [stdout] 39 |         fn merge_processor(&mut self, other: &Self) -> Result<()> {
[INFO] [stdout]    |                                       ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record_count`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:327:13
[INFO] [stdout]     |
[INFO] [stdout] 327 |             record_count: u64,
[INFO] [stdout]     |             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_count`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `progress`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:114:13
[INFO] [stdout]     |
[INFO] [stdout] 114 |             progress: &ProgressBar,
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_progress`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `progress`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:372:13
[INFO] [stdout]     |
[INFO] [stdout] 372 |             progress: &ProgressBar,
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_progress`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `thread_id`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:304:17
[INFO] [stdout]     |
[INFO] [stdout] 304 |             for thread_id in 0..num_threads {
[INFO] [stdout]     |                 ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thread_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:311:36
[INFO] [stdout]     |
[INFO] [stdout] 311 |                         if let Err(e) = worker_processor.process_sequence(&sequence) {
[INFO] [stdout]     |                                    ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record_count`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:327:13
[INFO] [stdout]     |
[INFO] [stdout] 327 |             record_count: u64,
[INFO] [stdout]     |             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_count`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `progress`
[INFO] [stdout]    --> src/utils/sequence_processor.rs:372:13
[INFO] [stdout]     |
[INFO] [stdout] 372 |             progress: &ProgressBar,
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_progress`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `qc_depth` is assigned to, but never used
[INFO] [stdout]   --> src/callable_loci/profilers/contig_profiler.rs:53:17
[INFO] [stdout]    |
[INFO] [stdout] 53 |         let mut qc_depth = 0;
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_qc_depth` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `qc_depth` is assigned to, but never used
[INFO] [stdout]   --> src/callable_loci/profilers/contig_profiler.rs:53:17
[INFO] [stdout]    |
[INFO] [stdout] 53 |         let mut qc_depth = 0;
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_qc_depth` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `to_chromosome_names` is never used
[INFO] [stdout]  --> src/commands/region.rs:4:12
[INFO] [stdout]   |
[INFO] [stdout] 3 | impl Region {
[INFO] [stdout]   | ----------- method in this implementation
[INFO] [stdout] 4 |     pub fn to_chromosome_names(&self) -> Vec<String> {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `save` is never used
[INFO] [stdout]   --> src/config/config.rs:40:12
[INFO] [stdout]    |
[INFO] [stdout] 23 | impl Config {
[INFO] [stdout]    | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 40 |     pub fn save(&self) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stdout]    |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `stop` is never read
[INFO] [stdout]   --> src/haplogroup/types.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 26 | pub struct ApiCoordinate {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 27 |     pub start: u32,
[INFO] [stdout] 28 |     pub stop: u32,
[INFO] [stdout]    |         ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `parent` is never read
[INFO] [stdout]   --> src/haplogroup/types.rs:60:16
[INFO] [stdout]    |
[INFO] [stdout] 58 | pub struct Haplogroup {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] 59 |     pub(crate) name: String,
[INFO] [stdout] 60 |     pub(crate) parent: Option<String>,
[INFO] [stdout]    |                ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Haplogroup` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `GenomeAccession` is never constructed
[INFO] [stdout]    --> src/haplogroup/types.rs:143:12
[INFO] [stdout]     |
[INFO] [stdout] 143 | pub struct GenomeAccession {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `GenomeAccession` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `accessions` and `get_accession` are never used
[INFO] [stdout]    --> src/haplogroup/types.rs:151:12
[INFO] [stdout]     |
[INFO] [stdout] 150 | impl ReferenceGenome {
[INFO] [stdout]     | -------------------- methods in this implementation
[INFO] [stdout] 151 |     pub fn accessions(&self) -> Vec<GenomeAccession> {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 222 |     pub fn get_accession(&self, common_name: &str) -> Option<GenomeAccession> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `id`, `quality`, and `metadata` are never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:8:13
[INFO] [stdout]    |
[INFO] [stdout] 6  |     pub struct Sequence {
[INFO] [stdout]    |                -------- fields in this struct
[INFO] [stdout] 7  |         pub data: Vec<u8>,
[INFO] [stdout] 8  |         pub id: Option<String>,
[INFO] [stdout]    |             ^^
[INFO] [stdout] 9  |         pub quality: Option<Vec<u8>>,
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout] 10 |         pub metadata: SequenceMetadata,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Sequence` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `is_mapped`, `chromosome`, and `position` are never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:15:13
[INFO] [stdout]    |
[INFO] [stdout] 14 |     pub struct SequenceMetadata {
[INFO] [stdout]    |                ---------------- fields in this struct
[INFO] [stdout] 15 |         pub is_mapped: bool,
[INFO] [stdout]    |             ^^^^^^^^^
[INFO] [stdout] 16 |         pub chromosome: Option<String>,
[INFO] [stdout]    |             ^^^^^^^^^^
[INFO] [stdout] 17 |         pub position: Option<u64>,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SequenceMetadata` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `skipped` is never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:23:13
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub struct ProcessingStats {
[INFO] [stdout]    |                --------------- field in this struct
[INFO] [stdout] 22 |         pub processed: u64,
[INFO] [stdout] 23 |         pub skipped: u64,
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ProcessingStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finalize` is never used
[INFO] [stdout]   --> src/utils/sequence_processor.rs:33:12
[INFO] [stdout]    |
[INFO] [stdout] 29 |     pub trait SequenceProcessor: Send + Clone + 'static {
[INFO] [stdout]    |               ----------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 33 |         fn finalize(&mut self) -> Result<()> {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `read_sequences` is never used
[INFO] [stdout]   --> src/utils/sequence_processor.rs:51:12
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub trait SequenceReader {
[INFO] [stdout]    |               -------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 51 |         fn read_sequences<P: SequenceProcessor + Clone + 'static>(
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `chunk_size` is never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:86:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub struct BamReader {
[INFO] [stdout]    |                --------- field in this struct
[INFO] [stdout] 85 |         reader: bam::Reader,
[INFO] [stdout] 86 |         chunk_size: usize,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `supported_builds` is never used
[INFO] [stdout]   --> src/vendor/mod.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 9  | pub trait TreeProvider {
[INFO] [stdout]    |           ------------ method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 15 |     fn supported_builds(&self) -> Vec<String>;
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `region` and `id` are never read
[INFO] [stdout]   --> src/vendor/ftdna.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct FtdnaVariant {
[INFO] [stdout]    |            ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 21 |     pub region: String,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 22 |     #[serde(default)]
[INFO] [stdout] 23 |     pub id: Option<u32>,
[INFO] [stdout]    |         ^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `root`, `kits_count`, `sub_branches`, and `big_y_count` are never read
[INFO] [stdout]   --> src/vendor/ftdna.rs:58:5
[INFO] [stdout]    |
[INFO] [stdout] 50 | struct FtdnaNode {
[INFO] [stdout]    |        --------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 58 |     root: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 59 |     #[serde(rename = "kitsCount")]
[INFO] [stdout] 60 |     kits_count: u32,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 61 |     #[serde(rename = "subBranches")]
[INFO] [stdout] 62 |     sub_branches: u32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 63 |     #[serde(rename = "bigYCount")]
[INFO] [stdout] 64 |     big_y_count: u32,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `stop` is never read
[INFO] [stdout]   --> src/vendor/decoding_us.rs:13:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct ApiCoordinate {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 12 |     pub start: u32,
[INFO] [stdout] 13 |     pub stop: u32,
[INFO] [stdout]    |         ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `last_updated` and `is_backbone` are never read
[INFO] [stdout]   --> src/vendor/decoding_us.rs:33:9
[INFO] [stdout]    |
[INFO] [stdout] 27 | pub struct ApiNode {
[INFO] [stdout]    |            ------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 33 |     pub last_updated: String,
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 34 |     #[serde(rename = "isBackbone")]
[INFO] [stdout] 35 |     pub is_backbone: bool,
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `deserialize_null_string` is never used
[INFO] [stdout]   --> src/vendor/decoding_us.rs:38:4
[INFO] [stdout]    |
[INFO] [stdout] 38 | fn deserialize_null_string<'de, D>(deserializer: D) -> Result<String, D::Error>
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `counts` is never read
[INFO] [stdout]   --> src/callable_loci/profilers/callable_profiler.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct CallableProfiler {
[INFO] [stdout]    |            ---------------- field in this struct
[INFO] [stdout] 12 |     counts: [u64; 6],
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]   --> src/callable_loci/profilers/contig_profiler.rs:82:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ContigProfiler {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub fn finish(&self) {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `to_chromosome_names` is never used
[INFO] [stdout]  --> src/commands/region.rs:4:12
[INFO] [stdout]   |
[INFO] [stdout] 3 | impl Region {
[INFO] [stdout]   | ----------- method in this implementation
[INFO] [stdout] 4 |     pub fn to_chromosome_names(&self) -> Vec<String> {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `save` is never used
[INFO] [stdout]   --> src/config/config.rs:40:12
[INFO] [stdout]    |
[INFO] [stdout] 23 | impl Config {
[INFO] [stdout]    | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 40 |     pub fn save(&self) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stdout]    |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `stop` is never read
[INFO] [stdout]   --> src/haplogroup/types.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 26 | pub struct ApiCoordinate {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 27 |     pub start: u32,
[INFO] [stdout] 28 |     pub stop: u32,
[INFO] [stdout]    |         ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `parent` is never read
[INFO] [stdout]   --> src/haplogroup/types.rs:60:16
[INFO] [stdout]    |
[INFO] [stdout] 58 | pub struct Haplogroup {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] 59 |     pub(crate) name: String,
[INFO] [stdout] 60 |     pub(crate) parent: Option<String>,
[INFO] [stdout]    |                ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Haplogroup` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `GenomeAccession` is never constructed
[INFO] [stdout]    --> src/haplogroup/types.rs:143:12
[INFO] [stdout]     |
[INFO] [stdout] 143 | pub struct GenomeAccession {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `GenomeAccession` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `accessions` and `get_accession` are never used
[INFO] [stdout]    --> src/haplogroup/types.rs:151:12
[INFO] [stdout]     |
[INFO] [stdout] 150 | impl ReferenceGenome {
[INFO] [stdout]     | -------------------- methods in this implementation
[INFO] [stdout] 151 |     pub fn accessions(&self) -> Vec<GenomeAccession> {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 222 |     pub fn get_accession(&self, common_name: &str) -> Option<GenomeAccession> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `id`, `quality`, and `metadata` are never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:8:13
[INFO] [stdout]    |
[INFO] [stdout] 6  |     pub struct Sequence {
[INFO] [stdout]    |                -------- fields in this struct
[INFO] [stdout] 7  |         pub data: Vec<u8>,
[INFO] [stdout] 8  |         pub id: Option<String>,
[INFO] [stdout]    |             ^^
[INFO] [stdout] 9  |         pub quality: Option<Vec<u8>>,
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout] 10 |         pub metadata: SequenceMetadata,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Sequence` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `is_mapped`, `chromosome`, and `position` are never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:15:13
[INFO] [stdout]    |
[INFO] [stdout] 14 |     pub struct SequenceMetadata {
[INFO] [stdout]    |                ---------------- fields in this struct
[INFO] [stdout] 15 |         pub is_mapped: bool,
[INFO] [stdout]    |             ^^^^^^^^^
[INFO] [stdout] 16 |         pub chromosome: Option<String>,
[INFO] [stdout]    |             ^^^^^^^^^^
[INFO] [stdout] 17 |         pub position: Option<u64>,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SequenceMetadata` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `skipped` is never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:23:13
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub struct ProcessingStats {
[INFO] [stdout]    |                --------------- field in this struct
[INFO] [stdout] 22 |         pub processed: u64,
[INFO] [stdout] 23 |         pub skipped: u64,
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ProcessingStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finalize` is never used
[INFO] [stdout]   --> src/utils/sequence_processor.rs:33:12
[INFO] [stdout]    |
[INFO] [stdout] 29 |     pub trait SequenceProcessor: Send + Clone + 'static {
[INFO] [stdout]    |               ----------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 33 |         fn finalize(&mut self) -> Result<()> {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `read_sequences` is never used
[INFO] [stdout]   --> src/utils/sequence_processor.rs:51:12
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub trait SequenceReader {
[INFO] [stdout]    |               -------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 51 |         fn read_sequences<P: SequenceProcessor + Clone + 'static>(
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `chunk_size` is never read
[INFO] [stdout]   --> src/utils/sequence_processor.rs:86:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub struct BamReader {
[INFO] [stdout]    |                --------- field in this struct
[INFO] [stdout] 85 |         reader: bam::Reader,
[INFO] [stdout] 86 |         chunk_size: usize,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `supported_builds` is never used
[INFO] [stdout]   --> src/vendor/mod.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 9  | pub trait TreeProvider {
[INFO] [stdout]    |           ------------ method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 15 |     fn supported_builds(&self) -> Vec<String>;
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `region` and `id` are never read
[INFO] [stdout]   --> src/vendor/ftdna.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct FtdnaVariant {
[INFO] [stdout]    |            ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 21 |     pub region: String,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 22 |     #[serde(default)]
[INFO] [stdout] 23 |     pub id: Option<u32>,
[INFO] [stdout]    |         ^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `root`, `kits_count`, `sub_branches`, and `big_y_count` are never read
[INFO] [stdout]   --> src/vendor/ftdna.rs:58:5
[INFO] [stdout]    |
[INFO] [stdout] 50 | struct FtdnaNode {
[INFO] [stdout]    |        --------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 58 |     root: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 59 |     #[serde(rename = "kitsCount")]
[INFO] [stdout] 60 |     kits_count: u32,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 61 |     #[serde(rename = "subBranches")]
[INFO] [stdout] 62 |     sub_branches: u32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 63 |     #[serde(rename = "bigYCount")]
[INFO] [stdout] 64 |     big_y_count: u32,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `stop` is never read
[INFO] [stdout]   --> src/vendor/decoding_us.rs:13:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct ApiCoordinate {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 12 |     pub start: u32,
[INFO] [stdout] 13 |     pub stop: u32,
[INFO] [stdout]    |         ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `last_updated` and `is_backbone` are never read
[INFO] [stdout]   --> src/vendor/decoding_us.rs:33:9
[INFO] [stdout]    |
[INFO] [stdout] 27 | pub struct ApiNode {
[INFO] [stdout]    |            ------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 33 |     pub last_updated: String,
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 34 |     #[serde(rename = "isBackbone")]
[INFO] [stdout] 35 |     pub is_backbone: bool,
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `deserialize_null_string` is never used
[INFO] [stdout]   --> src/vendor/decoding_us.rs:38:4
[INFO] [stdout]    |
[INFO] [stdout] 38 | fn deserialize_null_string<'de, D>(deserializer: D) -> Result<String, D::Error>
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `counts` is never read
[INFO] [stdout]   --> src/callable_loci/profilers/callable_profiler.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct CallableProfiler {
[INFO] [stdout]    |            ---------------- field in this struct
[INFO] [stdout] 12 |     counts: [u64; 6],
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]   --> src/callable_loci/profilers/contig_profiler.rs:82:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | impl ContigProfiler {
[INFO] [stdout]    | ------------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub fn finish(&self) {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 56s
[INFO] running `Command { std: "docker" "inspect" "87b35430bd5b58c65fecb63d90b90e460d8ec6de1552c67b052afaa3afc13818", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "87b35430bd5b58c65fecb63d90b90e460d8ec6de1552c67b052afaa3afc13818", kill_on_drop: false }`
[INFO] [stdout] 87b35430bd5b58c65fecb63d90b90e460d8ec6de1552c67b052afaa3afc13818
