[INFO] cloning repository https://github.com/wheaton5/long_read_binner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/long_read_binner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Flong_read_binner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Flong_read_binner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e72d4e667fc1c4e41b1616f1924744f0d4e76bd7
[INFO] checking wheaton5/long_read_binner/e72d4e667fc1c4e41b1616f1924744f0d4e76bd7 against master#c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3 for pr-141352
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Flong_read_binner" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wheaton5/long_read_binner on toolchain c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wheaton5/long_read_binner
[INFO] finished tweaking git repo https://github.com/wheaton5/long_read_binner
[INFO] tweaked toml for git repo https://github.com/wheaton5/long_read_binner written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/wheaton5/long_read_binner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn.git`
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-boomphf`
[INFO] [stderr]      Locking 72 packages to latest compatible versions
[INFO] [stderr]       Adding aho-corasick v1.1.3
[INFO] [stderr]  Downgrading ansi_term v0.11.0 -> v0.9.0
[INFO] [stderr]       Adding bindgen v0.71.1
[INFO] [stderr]       Adding bio-types v1.0.2 (available: v1.0.4)
[INFO] [stderr]       Adding bitflags v0.9.1
[INFO] [stderr]       Adding bitflags v2.9.1
[INFO] [stderr]       Adding boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192)
[INFO] [stderr]       Adding bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Updating cc v1.0.28 -> v1.2.23
[INFO] [stderr]       Adding cexpr v0.6.0
[INFO] [stderr]       Adding cfg-if v1.0.0
[INFO] [stderr]       Adding clang-sys v1.8.1
[INFO] [stderr]  Downgrading clap v2.32.0 -> v2.27.1 (available: v2.34.0)
[INFO] [stderr]       Adding custom_derive v0.1.7
[INFO] [stderr]       Adding derive-new v0.5.9
[INFO] [stderr]       Adding dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b)
[INFO] [stderr]       Adding fs-utils v1.1.4
[INFO] [stderr]       Adding glob v0.3.2
[INFO] [stderr]       Adding heck v0.5.0
[INFO] [stderr]       Adding idna v0.1.5
[INFO] [stderr]       Adding ieee754 v0.2.6
[INFO] [stderr]       Adding itertools v0.13.0
[INFO] [stderr]       Adding lazy_static v0.2.11
[INFO] [stderr]     Updating libc v0.2.48 -> v0.2.172
[INFO] [stderr]       Adding libloading v0.8.7
[INFO] [stderr]       Adding libz-sys v1.1.22
[INFO] [stderr]       Adding linear-map v1.2.0
[INFO] [stderr]       Adding lzma-sys v0.1.20
[INFO] [stderr]       Adding matches v0.1.10
[INFO] [stderr]       Adding memchr v2.7.4
[INFO] [stderr]       Adding minimal-lexical v0.2.1
[INFO] [stderr]       Adding newtype_derive v0.1.6
[INFO] [stderr]       Adding nom v7.1.3
[INFO] [stderr]       Adding percent-encoding v1.0.1
[INFO] [stderr]       Adding pkg-config v0.3.32
[INFO] [stderr]       Adding prettyplease v0.2.32
[INFO] [stderr]       Adding proc-macro2 v1.0.95
[INFO] [stderr]       Adding quick-error v1.2.3
[INFO] [stderr]       Adding quote v1.0.40
[INFO] [stderr]       Adding regex v1.11.1
[INFO] [stderr]       Adding regex-automata v0.4.9
[INFO] [stderr]       Adding regex-syntax v0.8.5
[INFO] [stderr]       Adding rust-htslib v0.24.0
[INFO] [stderr]       Adding rustc-hash v2.1.1
[INFO] [stderr]       Adding rustc_version v0.1.7
[INFO] [stderr]       Adding rustversion v1.0.20
[INFO] [stderr]       Adding semver v0.1.20
[INFO] [stderr]       Adding shlex v1.3.0
[INFO] [stderr]  Downgrading strsim v0.7.0 -> v0.6.0
[INFO] [stderr]       Adding strum_macros v0.26.4
[INFO] [stderr]       Adding syn v1.0.109
[INFO] [stderr]       Adding syn v2.0.101
[INFO] [stderr]  Downgrading textwrap v0.10.0 -> v0.9.0
[INFO] [stderr]       Adding thiserror v1.0.69
[INFO] [stderr]       Adding thiserror-impl v1.0.69
[INFO] [stderr]       Adding tinyvec v1.9.0
[INFO] [stderr]       Adding tinyvec_macros v0.1.1
[INFO] [stderr]       Adding unicode-bidi v0.3.18
[INFO] [stderr]       Adding unicode-ident v1.0.18
[INFO] [stderr]       Adding unicode-normalization v0.1.24
[INFO] [stderr]       Adding url v1.7.2
[INFO] [stderr]       Adding vcpkg v0.2.15
[INFO] [stderr]       Adding windows-targets v0.53.0
[INFO] [stderr]       Adding windows_aarch64_gnullvm v0.53.0
[INFO] [stderr]       Adding windows_aarch64_msvc v0.53.0
[INFO] [stderr]       Adding windows_i686_gnu v0.53.0
[INFO] [stderr]       Adding windows_i686_gnullvm v0.53.0
[INFO] [stderr]       Adding windows_i686_msvc v0.53.0
[INFO] [stderr]       Adding windows_x86_64_gnu v0.53.0
[INFO] [stderr]       Adding windows_x86_64_gnullvm v0.53.0
[INFO] [stderr]       Adding windows_x86_64_msvc v0.53.0
[INFO] [stderr]       Adding yaml-rust v0.3.5
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded crc32fast v1.1.2
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded num_cpus v1.9.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded crossbeam-deque v0.6.3
[INFO] [stderr]   Downloaded crossbeam-epoch v0.7.0
[INFO] [stderr]   Downloaded spin v0.4.10
[INFO] [stderr]   Downloaded rayon-core v1.4.1
[INFO] [stderr]   Downloaded itertools v0.8.0
[INFO] [stderr]   Downloaded rayon v1.0.3
[INFO] [stderr]   Downloaded crossbeam-channel v0.3.6
[INFO] [stderr]   Downloaded serde_json v1.0.37
[INFO] [stderr]   Downloaded libloading v0.8.7
[INFO] [stderr]   Downloaded flate2 v1.0.6
[INFO] [stderr]   Downloaded bio-types v1.0.2
[INFO] [stderr]   Downloaded concurrent-hashmap v0.2.2
[INFO] [stderr]   Downloaded pdqsort v1.0.3
[INFO] [stderr]   Downloaded smallvec v0.6.8
[INFO] [stderr]   Downloaded crossbeam-utils v0.6.3
[INFO] [stderr]   Downloaded crossbeam v0.6.0
[INFO] [stderr]   Downloaded bindgen v0.71.1
[INFO] [stderr]   Downloaded libz-sys v1.1.22
[INFO] [stderr]   Downloaded rust-htslib v0.24.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] bae94e96721fdff0cb12ca01072f508b6361dd7bb8b953a2098a87fc1a3ce63b
[INFO] running `Command { std: "docker" "start" "-a" "bae94e96721fdff0cb12ca01072f508b6361dd7bb8b953a2098a87fc1a3ce63b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bae94e96721fdff0cb12ca01072f508b6361dd7bb8b953a2098a87fc1a3ce63b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bae94e96721fdff0cb12ca01072f508b6361dd7bb8b953a2098a87fc1a3ce63b", kill_on_drop: false }`
[INFO] [stdout] bae94e96721fdff0cb12ca01072f508b6361dd7bb8b953a2098a87fc1a3ce63b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c54d15252f34ef28ba353b21a35b754a6299b02ebcb7b697aaee78ecb936eaeb
[INFO] running `Command { std: "docker" "start" "-a" "c54d15252f34ef28ba353b21a35b754a6299b02ebcb7b697aaee78ecb936eaeb", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]     Checking rand_core v0.3.0
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]     Checking scopeguard v0.3.3
[INFO] [stderr]    Compiling arrayvec v0.4.10
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]     Checking nodrop v0.1.13
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]     Checking memoffset v0.2.1
[INFO] [stderr]    Compiling rand v0.6.4
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]    Compiling prettyplease v0.2.32
[INFO] [stderr]    Compiling parking_lot_core v0.4.0
[INFO] [stderr]     Checking stable_deref_trait v1.1.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]    Compiling libloading v0.8.7
[INFO] [stderr]     Checking crossbeam-utils v0.2.2
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]     Checking rand_chacha v0.1.1
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_pcg v0.1.1
[INFO] [stderr]    Compiling cc v1.2.23
[INFO] [stderr]     Checking smallvec v0.6.8
[INFO] [stderr]     Checking owning_ref v0.4.0
[INFO] [stderr]     Checking crossbeam-utils v0.6.3
[INFO] [stderr]    Compiling either v1.5.0
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling rayon-core v1.4.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling cfg-if v0.1.6
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking tinyvec v1.9.0
[INFO] [stderr]    Compiling log v0.4.6
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking crossbeam-epoch v0.3.1
[INFO] [stderr]     Checking lock_api v0.1.5
[INFO] [stderr]     Checking num-integer v0.1.39
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling num-bigint v0.2.2
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling serde v1.0.85
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking rand_os v0.1.1
[INFO] [stderr]     Checking num_cpus v1.9.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]     Checking crossbeam-deque v0.2.0
[INFO] [stderr]     Checking unicode-normalization v0.1.24
[INFO] [stderr]     Checking crossbeam-epoch v0.7.0
[INFO] [stderr]    Compiling num-iter v0.1.37
[INFO] [stderr]    Compiling rayon v1.0.3
[INFO] [stderr]    Compiling crc32fast v1.1.2
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]     Checking matches v0.1.10
[INFO] [stderr]     Checking unicode-bidi v0.3.18
[INFO] [stderr]    Compiling num-rational v0.2.1
[INFO] [stderr]     Checking crossbeam-deque v0.6.3
[INFO] [stderr]     Checking itertools v0.8.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling miniz-sys v0.1.11
[INFO] [stderr]     Checking idna v0.1.5
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking parking_lot v0.7.1
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]     Checking crossbeam-channel v0.3.6
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]     Checking rand_core v0.2.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking bit-vec v0.4.4
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking spin v0.4.10
[INFO] [stderr]     Checking textwrap v0.9.0
[INFO] [stderr]     Checking bit-set v0.4.0
[INFO] [stderr]     Checking flate2 v1.0.6
[INFO] [stderr]     Checking rand v0.5.5
[INFO] [stderr]     Checking concurrent-hashmap v0.2.2
[INFO] [stderr]     Checking atty v0.2.11
[INFO] [stderr]     Checking pdqsort v1.0.3
[INFO] [stderr]     Checking strsim v0.6.0
[INFO] [stderr]     Checking ansi_term v0.9.0
[INFO] [stderr]     Checking num v0.2.0
[INFO] [stderr]     Checking yaml-rust v0.3.5
[INFO] [stderr]     Checking crossbeam v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking clap v2.27.1
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]     Checking serde_json v1.0.37
[INFO] [stderr]     Checking boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192)
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn.git#14c1e770)
[INFO] [stderr]     Checking bio-types v1.0.2
[INFO] [stderr]    Compiling rust-htslib v0.24.0
[INFO] [stdout] error[E0599]: no method named `blacklist_type` found for struct `bindgen::Builder` in the current scope
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.24.0/build.rs:89:10
[INFO] [stdout]    |
[INFO] [stdout] 86 | /     bindgen::Builder::default()
[INFO] [stdout] 87 | |         .header("wrapper.h")
[INFO] [stdout] 88 | |         .generate_comments(false)
[INFO] [stdout] 89 | |         .blacklist_type("max_align_t")
[INFO] [stdout]    | |_________-^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: there is a method `blocklist_type` with a similar name
[INFO] [stdout]    |
[INFO] [stdout] 89 -         .blacklist_type("max_align_t")
[INFO] [stdout] 89 +         .blocklist_type("max_align_t")
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rust-htslib` (build script) due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "c54d15252f34ef28ba353b21a35b754a6299b02ebcb7b697aaee78ecb936eaeb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c54d15252f34ef28ba353b21a35b754a6299b02ebcb7b697aaee78ecb936eaeb", kill_on_drop: false }`
[INFO] [stdout] c54d15252f34ef28ba353b21a35b754a6299b02ebcb7b697aaee78ecb936eaeb