[INFO] cloning repository https://github.com/keithyin/rsabpoa [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/rsabpoa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 97f9901fb57de401d931d75482b308cd6fe7cc5e [INFO] checking keithyin/rsabpoa against master#c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3 for pr-141352 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/rsabpoa on toolchain c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/rsabpoa [INFO] finished tweaking git repo https://github.com/keithyin/rsabpoa [INFO] tweaked toml for git repo https://github.com/keithyin/rsabpoa written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/rsabpoa already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded simba v0.9.0 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded bio v2.2.0 [INFO] [stderr] Downloaded zerocopy v0.8.22 [INFO] [stderr] Downloaded zerocopy-derive v0.8.22 [INFO] [stderr] Downloaded openssl-src v300.4.2+3.4.1 [INFO] [stderr] Downloaded gskits v0.13.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ee78b838beed61be3422a805aee35931a16bfd7eb441f09f8ea372454ee2d791 [INFO] running `Command { std: "docker" "start" "-a" "ee78b838beed61be3422a805aee35931a16bfd7eb441f09f8ea372454ee2d791", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ee78b838beed61be3422a805aee35931a16bfd7eb441f09f8ea372454ee2d791", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee78b838beed61be3422a805aee35931a16bfd7eb441f09f8ea372454ee2d791", kill_on_drop: false }` [INFO] [stdout] ee78b838beed61be3422a805aee35931a16bfd7eb441f09f8ea372454ee2d791 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+c43786c9b7b8d8dcc3f9c604e0e3074c16ed69d3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e47e8c61ff29137a66fb1cf45ad36f4acb5878c695d41281c1d94afaf8648657 [INFO] running `Command { std: "docker" "start" "-a" "e47e8c61ff29137a66fb1cf45ad36f4acb5878c695d41281c1d94afaf8648657", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.170 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking writeable v0.5.5 [INFO] [stderr] Checking litemap v0.7.5 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling serde v1.0.218 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking bytemuck v1.22.0 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling getrandom v0.3.1 [INFO] [stderr] Checking icu_properties_data v1.5.0 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Checking smallvec v1.14.0 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Checking write16 v1.0.0 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Compiling quote v1.0.39 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking utf16_iter v1.0.5 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking wide v0.7.32 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling syn v2.0.99 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling zerocopy v0.8.22 [INFO] [stderr] Checking once_cell v1.20.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Compiling portable-atomic v1.11.0 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling anyhow v1.0.97 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking indexmap v2.7.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking unicode-width v0.2.0 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Compiling cc v1.2.16 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking tracing-core v0.1.33 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking petgraph v0.7.1 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking sha1_smol v1.0.1 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking pin-project-lite v0.2.16 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking clap_builder v4.5.31 [INFO] [stderr] Checking uuid v1.15.1 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking chrono v0.4.40 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.4.2+3.4.1 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Checking crossbeam-channel v0.5.14 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Compiling rsabpoa v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libz-sys v1.1.21 [INFO] [stderr] Compiling openssl-sys v0.9.106 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.218 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling clap_derive v4.5.28 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking zerovec v0.10.4 [INFO] [stderr] Checking tracing v0.1.41 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking clap v4.5.31 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand v0.9.0 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v2.2.0 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking gskits v0.13.2 [INFO] [stdout] warning: type `__off_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:83:10 [INFO] [stdout] | [INFO] [stdout] 83 | pub type __off_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `OffT` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__off64_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:84:10 [INFO] [stdout] | [INFO] [stdout] 84 | pub type __off64_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `Off64T` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__m128i` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:85:10 [INFO] [stdout] | [INFO] [stdout] 85 | pub type __m128i = [::std::os::raw::c_longlong; 2usize]; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `M128i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `_IO_lock_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:102:10 [INFO] [stdout] | [INFO] [stdout] 102 | pub type _IO_lock_t = ::std::os::raw::c_void; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `IoLockT` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `marker::PhantomData` [INFO] [stdout] --> src/abpoa.rs:1:23 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{ffi::c_int, marker::PhantomData, ops::Deref}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__off_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:83:10 [INFO] [stdout] | [INFO] [stdout] 83 | pub type __off_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `OffT` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__off64_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:84:10 [INFO] [stdout] | [INFO] [stdout] 84 | pub type __off64_t = ::std::os::raw::c_long; [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `Off64T` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `__m128i` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:85:10 [INFO] [stdout] | [INFO] [stdout] 85 | pub type __m128i = [::std::os::raw::c_longlong; 2usize]; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case: `M128i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `_IO_lock_t` should have an upper camel case name [INFO] [stdout] --> src/abpoa_sys.rs:102:10 [INFO] [stdout] | [INFO] [stdout] 102 | pub type _IO_lock_t = ::std::os::raw::c_void; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `IoLockT` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `marker::PhantomData` [INFO] [stdout] --> src/abpoa.rs:1:23 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{ffi::c_int, marker::PhantomData, ops::Deref}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `abpoa_add_graph_alignment`, `abpoa_align_sequence_to_graph`, `abpoa_cons_t`, `abpoa_free`, `abpoa_generate_consensus`, `abpoa_generate_rc_msa`, `abpoa_init`, `abpoa_msa1`, `abpoa_post_set_para`, `abpoa_reset`, and `utils::reverse_complement` [INFO] [stdout] --> src/abpoa.rs:6:9 [INFO] [stdout] | [INFO] [stdout] 6 | abpoa_add_graph_alignment, abpoa_align_sequence_to_graph, abpoa_cons_t, abpoa_free, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] 7 | abpoa_generate_consensus, abpoa_generate_rc_msa, abpoa_init, abpoa_msa, abpoa_msa1, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] 8 | abpoa_para_t, abpoa_post_set_para, abpoa_res_t, abpoa_reset, abpoa_t, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] 9 | }, [INFO] [stdout] 10 | utils::reverse_complement, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abpoa::AlignMode` [INFO] [stdout] --> src/wrapper.rs:3:13 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{abpoa::AlignMode, abpoa_sys::{ [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `abpoa_add_graph_alignment`, `abpoa_align_sequence_to_graph`, `abpoa_cons_t`, `abpoa_free`, `abpoa_generate_consensus`, `abpoa_generate_rc_msa`, `abpoa_init`, `abpoa_msa1`, `abpoa_post_set_para`, `abpoa_reset`, and `utils::reverse_complement` [INFO] [stdout] --> src/abpoa.rs:6:9 [INFO] [stdout] | [INFO] [stdout] 6 | abpoa_add_graph_alignment, abpoa_align_sequence_to_graph, abpoa_cons_t, abpoa_free, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] 7 | abpoa_generate_consensus, abpoa_generate_rc_msa, abpoa_init, abpoa_msa, abpoa_msa1, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] 8 | abpoa_para_t, abpoa_post_set_para, abpoa_res_t, abpoa_reset, abpoa_t, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] 9 | }, [INFO] [stdout] 10 | utils::reverse_complement, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abpoa::AlignMode` [INFO] [stdout] --> src/wrapper.rs:3:13 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{abpoa::AlignMode, abpoa_sys::{ [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::*` [INFO] [stdout] --> src/lib.rs:38:9 [INFO] [stdout] | [INFO] [stdout] 38 | use super::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:107:9 [INFO] [stdout] | [INFO] [stdout] 107 | pub _IO_read_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_ptr` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:108:9 [INFO] [stdout] | [INFO] [stdout] 108 | pub _IO_read_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:109:9 [INFO] [stdout] | [INFO] [stdout] 109 | pub _IO_read_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:110:9 [INFO] [stdout] | [INFO] [stdout] 110 | pub _IO_write_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:111:9 [INFO] [stdout] | [INFO] [stdout] 111 | pub _IO_write_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_ptr` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | pub _IO_write_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | pub _IO_buf_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:114:9 [INFO] [stdout] | [INFO] [stdout] 114 | pub _IO_buf_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:115:9 [INFO] [stdout] | [INFO] [stdout] 115 | pub _IO_save_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_backup_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:116:9 [INFO] [stdout] | [INFO] [stdout] 116 | pub _IO_backup_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_backup_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:117:9 [INFO] [stdout] | [INFO] [stdout] 117 | pub _IO_save_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `abpoa` [INFO] [stdout] --> src/wrapper.rs:103:13 [INFO] [stdout] | [INFO] [stdout] 103 | let abpoa = AbpoaParam::new(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_abpoa` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:107:9 [INFO] [stdout] | [INFO] [stdout] 107 | pub _IO_read_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_ptr` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:108:9 [INFO] [stdout] | [INFO] [stdout] 108 | pub _IO_read_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_read_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:109:9 [INFO] [stdout] | [INFO] [stdout] 109 | pub _IO_read_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:110:9 [INFO] [stdout] | [INFO] [stdout] 110 | pub _IO_write_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_ptr` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:111:9 [INFO] [stdout] | [INFO] [stdout] 111 | pub _IO_write_ptr: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_ptr` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_write_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | pub _IO_write_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | pub _IO_buf_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_buf_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:114:9 [INFO] [stdout] | [INFO] [stdout] 114 | pub _IO_buf_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:115:9 [INFO] [stdout] | [INFO] [stdout] 115 | pub _IO_save_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_backup_base` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:116:9 [INFO] [stdout] | [INFO] [stdout] 116 | pub _IO_backup_base: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_backup_base` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `_IO_save_end` should have a snake case name [INFO] [stdout] --> src/abpoa_sys.rs:117:9 [INFO] [stdout] | [INFO] [stdout] 117 | pub _IO_save_end: *mut ::std::os::raw::c_char, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 02s [INFO] running `Command { std: "docker" "inspect" "e47e8c61ff29137a66fb1cf45ad36f4acb5878c695d41281c1d94afaf8648657", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e47e8c61ff29137a66fb1cf45ad36f4acb5878c695d41281c1d94afaf8648657", kill_on_drop: false }` [INFO] [stdout] e47e8c61ff29137a66fb1cf45ad36f4acb5878c695d41281c1d94afaf8648657