[INFO] cloning repository https://github.com/duykhoidang/rust_chem [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/duykhoidang/rust_chem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fduykhoidang%2Frust_chem", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fduykhoidang%2Frust_chem'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e20dc5e0dde4c0e8c01db85a27c15bf9a3839939 [INFO] testing duykhoidang/rust_chem against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fduykhoidang%2Frust_chem" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/duykhoidang/rust_chem on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] finished tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] tweaked toml for git repo https://github.com/duykhoidang/rust_chem written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/duykhoidang/rust_chem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] testing duykhoidang/rust_chem against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fduykhoidang%2Frust_chem" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/duykhoidang/rust_chem on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] finished tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] tweaked toml for git repo https://github.com/duykhoidang/rust_chem written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/duykhoidang/rust_chem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] testing duykhoidang/rust_chem against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fduykhoidang%2Frust_chem" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/duykhoidang/rust_chem on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] finished tweaking git repo https://github.com/duykhoidang/rust_chem [INFO] tweaked toml for git repo https://github.com/duykhoidang/rust_chem written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/duykhoidang/rust_chem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lapack-src v0.6.0 [INFO] [stderr] Downloaded cauchy v0.2.2 [INFO] [stderr] Downloaded blas-src v0.6.1 [INFO] [stderr] Downloaded lapacke-sys v0.1.4 [INFO] [stderr] Downloaded blas-src v0.2.1 [INFO] [stderr] Downloaded lapacke v0.2.0 [INFO] [stderr] Downloaded ndarray-linalg v0.12.1 [INFO] [stderr] Downloaded GSL v1.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8e4181c156cb55da09517fa0e0a2e400aff565e4e665d69abaed601819d4c836 [INFO] running `Command { std: "docker" "start" "-a" "8e4181c156cb55da09517fa0e0a2e400aff565e4e665d69abaed601819d4c836", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8e4181c156cb55da09517fa0e0a2e400aff565e4e665d69abaed601819d4c836", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8e4181c156cb55da09517fa0e0a2e400aff565e4e665d69abaed601819d4c836", kill_on_drop: false }` [INFO] [stdout] 8e4181c156cb55da09517fa0e0a2e400aff565e4e665d69abaed601819d4c836 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1a2efbc3c417ca1a216118cbc61601c375f6b6b61827fa217571f61e17e28b89 [INFO] running `Command { std: "docker" "start" "-a" "1a2efbc3c417ca1a216118cbc61601c375f6b6b61827fa217571f61e17e28b89", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling const_fn v0.4.4 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling blas-src v0.2.1 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling c_vec v1.0.12 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling netlib-src v0.8.0 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling lapacke-sys v0.1.4 [INFO] [stderr] Compiling cblas-sys v0.1.4 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling lapacke v0.2.0 [INFO] [stderr] Compiling cauchy v0.2.2 [INFO] [stderr] Compiling blas-src v0.6.1 [INFO] [stderr] Compiling lapack-src v0.6.0 [INFO] [stderr] Compiling ndarray-linalg v0.12.1 [INFO] [stderr] Compiling run v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `rayon::prelude::*` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::prelude::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use ndarray::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray_linalg::*` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use ndarray_linalg::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::parallel::*` [INFO] [stdout] --> src/main.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use ndarray::parallel::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::Rng` [INFO] [stdout] --> src/main.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use rand::Rng; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::vec_deque::VecDeque` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::collections::vec_deque::VecDeque; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nbasis` [INFO] [stdout] --> src/main.rs:138:7 [INFO] [stdout] | [INFO] [stdout] 138 | let nbasis = 2usize; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nbasis` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `errmax` [INFO] [stdout] --> src/main.rs:139:7 [INFO] [stdout] | [INFO] [stdout] 139 | let errmax = 1e-4; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_errmax` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n_diis` [INFO] [stdout] --> src/main.rs:140:7 [INFO] [stdout] | [INFO] [stdout] 140 | let n_diis = 4usize; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_diis` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `maxcyc` [INFO] [stdout] --> src/main.rs:141:7 [INFO] [stdout] | [INFO] [stdout] 141 | let maxcyc = 100usize; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_maxcyc` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `M` is never used [INFO] [stdout] --> src/main.rs:19:6 [INFO] [stdout] | [INFO] [stdout] 19 | type M = Array2; [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `ngs` is never read [INFO] [stdout] --> src/gaussint/gaussians.rs:5:7 [INFO] [stdout] | [INFO] [stdout] 4 | pub struct Gaussian { [INFO] [stdout] | -------- field in this struct [INFO] [stdout] 5 | pub ngs : u32, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcOxZCzL/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librand-e85eee8e65c2f5aa.rlib,librand_xorshift-116214b7109da3ee.rlib,librand_pcg-6bb4a1398555c19b.rlib,librand_hc-f41ac268177525ed.rlib,librand_chacha-b2c3352979e637d9.rlib,librand_isaac-3db125fef55fac9d.rlib,librand_os-f04d4b661480be7e.rlib,librand_jitter-329d2c0803290978.rlib,librgsl-4cb7cfa3216340f2.rlib,libc_vec-c227f82583194290.rlib,libndarray_linalg-d35df4af9b23be6b.rlib,libcauchy-d9c06b21c09e7f11.rlib,liblapacke-8c988e56c4b25f33.rlib,liblapacke_sys-d9923ae1e135e537.rlib,liblapack_src-0919ae4b9d7e30b0.rlib,libblas_src-18ba62581bd88509.rlib,libnetlib_src-5a2f1197f9c8a8ed.rlib,libndarray-7ec2419553f218f5.rlib,libmatrixmultiply-68d8ff4b3d14fdee.rlib,libnum_complex-d102680b14a869b2.rlib,librand-3b9747f3bc567b35.rlib,librand_core-c3db30ed0942cc5a.rlib,librand_core-cd9d461713060caf.rlib,libserde-5f08c3d09eda606c.rlib,librayon-2017a19fc73ac0b7.rlib,librayon_core-583d1a0c0bea80ce.rlib,libnum_cpus-d4c7160b55c9739b.rlib,libcrossbeam_deque-1a5d25e3e1b2b08e.rlib,libcrossbeam_epoch-e4ee55d63643eab5.rlib,libmemoffset-92503f0332dbf8b4.rlib,libscopeguard-79383ac64a2cf413.rlib,libcrossbeam_channel-783af6cf81076c45.rlib,libcrossbeam_utils-c5f80107791dd185.rlib,liblazy_static-e4325871dc54d52c.rlib,libcfg_if-153876ff6516522c.rlib,libeither-648aa96a4a3b2c2c.rlib,libnum_integer-f89de68f4b664954.rlib,librawpointer-351b5fe248a16bea.rlib,libapprox-68924e0de6663328.rlib,libnum_traits-a1e92d4d4a3f525c.rlib,libcblas_sys-467b3368abc4d8fe.rlib,liblibc-b498c9590ad7831f.rlib,libblas_src-83aac57bf66d6a20.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgfortran" "-lblas-netlib" "-llapack-netlib" "-lcblas" "-llapacke" "-ltmglib" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcOxZCzL/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,-znostart-stop-gc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/netlib-src-f328f05175147e50/out/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/run-16f538ffb64cd290" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-Wl,-O1" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: undefined symbol: gsl_sf_hyperg_1F1 [INFO] [stdout] >>> referenced by hypergeometric.rs:39 (src/hypergeometric.rs:39) [INFO] [stdout] >>> rgsl-4cb7cfa3216340f2.rgsl.8d9d750687fc9a4f-cgu.04.rcgu.o:(rgsl::hypergeometric::hyperg_1F1::h40c57ca807ec0a07) in archive /opt/rustwide/target/debug/deps/librgsl-4cb7cfa3216340f2.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `run` (bin "run") due to 1 previous error; 12 warnings emitted [INFO] running `Command { std: "docker" "inspect" "1a2efbc3c417ca1a216118cbc61601c375f6b6b61827fa217571f61e17e28b89", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a2efbc3c417ca1a216118cbc61601c375f6b6b61827fa217571f61e17e28b89", kill_on_drop: false }` [INFO] [stdout] 1a2efbc3c417ca1a216118cbc61601c375f6b6b61827fa217571f61e17e28b89