[INFO] cloning repository https://github.com/ban-m/kiley [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f4e9c0d11d8218d561f91d68117a3827a3d5a8b4 [INFO] testing ban-m/kiley against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ban-m/kiley [INFO] finished tweaking git repo https://github.com/ban-m/kiley [INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 76b55a832ae11b40f10ccd4f2dbb90bf7d2c71c02e16b3f89b78e04dc75914ae [INFO] running `Command { std: "docker" "start" "-a" "76b55a832ae11b40f10ccd4f2dbb90bf7d2c71c02e16b3f89b78e04dc75914ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "76b55a832ae11b40f10ccd4f2dbb90bf7d2c71c02e16b3f89b78e04dc75914ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "76b55a832ae11b40f10ccd4f2dbb90bf7d2c71c02e16b3f89b78e04dc75914ae", kill_on_drop: false }` [INFO] [stdout] 76b55a832ae11b40f10ccd4f2dbb90bf7d2c71c02e16b3f89b78e04dc75914ae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 307f11bb3e92bd41e825e73523b4fbdaf0ba127f4f97d1e31de4c11c3aa670cd [INFO] running `Command { std: "docker" "start" "-a" "307f11bb3e92bd41e825e73523b4fbdaf0ba127f4f97d1e31de4c11c3aa670cd", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling anstyle-query v1.1.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling anstyle v1.0.8 [INFO] [stderr] Compiling colorchoice v1.0.2 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling anstyle-parse v0.2.5 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling anstream v0.6.15 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.1.7 [INFO] [stderr] Compiling rand_xoshiro v0.6.0 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling edlib_sys v0.2.0 (https://github.com/ban-m/edlib-sys.git?branch=master#ef696f3f) [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling env_filter v0.1.2 [INFO] [stderr] Compiling env_logger v0.11.5 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling bio_utils v0.3.0 (https://github.com/ban-m/bio_utils.git#dc32ea1d) [INFO] [stderr] Compiling kiley v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.45s [INFO] running `Command { std: "docker" "inspect" "307f11bb3e92bd41e825e73523b4fbdaf0ba127f4f97d1e31de4c11c3aa670cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "307f11bb3e92bd41e825e73523b4fbdaf0ba127f4f97d1e31de4c11c3aa670cd", kill_on_drop: false }` [INFO] [stdout] 307f11bb3e92bd41e825e73523b4fbdaf0ba127f4f97d1e31de4c11c3aa670cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a6840b957798ea149752a496950a7fed74372299f922cbd6579549061550cd77 [INFO] running `Command { std: "docker" "start" "-a" "a6840b957798ea149752a496950a7fed74372299f922cbd6579549061550cd77", kill_on_drop: false }` [INFO] [stderr] Compiling kiley v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.83s [INFO] running `Command { std: "docker" "inspect" "a6840b957798ea149752a496950a7fed74372299f922cbd6579549061550cd77", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a6840b957798ea149752a496950a7fed74372299f922cbd6579549061550cd77", kill_on_drop: false }` [INFO] [stdout] a6840b957798ea149752a496950a7fed74372299f922cbd6579549061550cd77 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7236096a4994b27ea5e1efdcc3da188eed54a6484e3853a5be9ddc8adbb6ef4b [INFO] running `Command { std: "docker" "start" "-a" "7236096a4994b27ea5e1efdcc3da188eed54a6484e3853a5be9ddc8adbb6ef4b", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kiley-c952c11e1e5ff991) [INFO] [stdout] [INFO] [stdout] running 42 tests [INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok [INFO] [stdout] test bialignment::test::global_affine_check ... ok [INFO] [stdout] test hmm::full::test::align ... ok [INFO] [stdout] test hmm::full::test::forward ... ok [INFO] [stdout] test bialignment::guided::test::edit_dist_check_iden ... ok [INFO] [stdout] test hmm::guided::tests::align ... ok [INFO] [stdout] test hmm::guided::tests::likelihood2 ... ok [INFO] [stdout] test bialignment::guided::test::edit_dist_check ... ok [INFO] [stdout] test hmm::guided::tests::likelihood ... ok [INFO] [stdout] test bialignment::guided::test::global_check ... ok [INFO] [stdout] test bialignment::guided::test::overlap_check ... ok [INFO] [stdout] test hmm::guided::tests::update_aln_path_test ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::align ... ok [INFO] [stdout] test bialignment::banded::tests::banded_naive_check ... ok [INFO] [stdout] test bialignment::guided::test::infix_check ... ok [INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok [INFO] [stdout] test bialignment::banded::tests::global_affine_banded_check ... ok [INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check has been running for over 60 seconds [INFO] [stdout] test bialignment::guided::test::modification_table_check has been running for over 60 seconds [INFO] [stdout] test bialignment::guided::test::polish_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_post_check has been running for over 60 seconds [INFO] [stdout] test hmm::full::test::modification_table_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post_test ... ok [INFO] [stdout] test hmm::guided::tests::modification_table has been running for over 60 seconds [INFO] [stdout] test hmm::guided::tests::modification_table2 has been running for over 60 seconds [INFO] [stdout] test hmm::guided::tests::polish_long_insertion has been running for over 60 seconds [INFO] [stdout] test hmm::guided::tests::polish_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::align_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::fit_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_pre has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::align_test ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::fit_test ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post ... ok [INFO] [stdout] test hmm::tests::align ... ok [INFO] [stdout] test hmm::tests::hmm_full_guided ... ok [INFO] [stdout] test op::tests::take_skip ... ok [INFO] [stdout] test padseq::tests::padseq ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::polish has been running for over 60 seconds [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_test ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::lk_pre ... ok [INFO] [stdout] test hmm::full::test::modification_table_test ... ok [INFO] [stdout] test bialignment::guided::test::polish_test ... ok [INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim ... ok [INFO] [stdout] test bialignment::test::edit_dist_fast_check ... ok [INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test ... ok [INFO] [stdout] test bialignment::test::edit_dist_post_check ... ok [INFO] [stdout] test hmm::guided::tests::modification_table ... ok [INFO] [stdout] test bialignment::guided::test::modification_table_check ... ok [ERROR] error running command: command timed out after 900 seconds [INFO] running `Command { std: "docker" "inspect" "7236096a4994b27ea5e1efdcc3da188eed54a6484e3853a5be9ddc8adbb6ef4b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7236096a4994b27ea5e1efdcc3da188eed54a6484e3853a5be9ddc8adbb6ef4b", kill_on_drop: false }` [INFO] [stdout] 7236096a4994b27ea5e1efdcc3da188eed54a6484e3853a5be9ddc8adbb6ef4b