[INFO] cloning repository https://github.com/SorenHeidelbach/rustymotif [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SorenHeidelbach/rustymotif" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a7c417318d3c4e01aaac754b173851a5f24023bd [INFO] testing SorenHeidelbach/rustymotif against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/SorenHeidelbach/rustymotif on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/SorenHeidelbach/rustymotif [INFO] finished tweaking git repo https://github.com/SorenHeidelbach/rustymotif [INFO] tweaked toml for git repo https://github.com/SorenHeidelbach/rustymotif written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/SorenHeidelbach/rustymotif already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1a5b48b5562b827717ed8ec722d28564579c27af5c0c2f14b88a703de870287f [INFO] running `Command { std: "docker" "start" "-a" "1a5b48b5562b827717ed8ec722d28564579c27af5c0c2f14b88a703de870287f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a5b48b5562b827717ed8ec722d28564579c27af5c0c2f14b88a703de870287f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a5b48b5562b827717ed8ec722d28564579c27af5c0c2f14b88a703de870287f", kill_on_drop: false }` [INFO] [stdout] 1a5b48b5562b827717ed8ec722d28564579c27af5c0c2f14b88a703de870287f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] eb9604d5128251637f8e105fa907f73c32633d6a8dcfd07781746f3733caf994 [INFO] running `Command { std: "docker" "start" "-a" "eb9604d5128251637f8e105fa907f73c32633d6a8dcfd07781746f3733caf994", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling autocfg v1.4.0 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v0.2.1 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling tempfile v3.16.0 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling clap_derive v4.5.24 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling petgraph v0.7.1 [INFO] [stderr] Compiling env_logger v0.11.6 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling clap v4.5.27 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling seq_io v0.3.3 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling rustymotif v0.1.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stdout] --> src/lib/motif.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:7:11 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `verbose` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | verbose, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `normal` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:82:5 [INFO] [stdout] | [INFO] [stdout] 82 | normal, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `silent` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:83:5 [INFO] [stdout] | [INFO] [stdout] 83 | silent, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sequence::MethylationThresholds` [INFO] [stdout] --> src/bin/rustymotif/data.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::sequence::MethylationThresholds; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sequence::Contig` [INFO] [stdout] --> src/bin/rustymotif/fasta_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::sequence::Contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sequence::MethylationThresholds` [INFO] [stdout] --> src/bin/rustymotif/fasta_reader.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::sequence::MethylationThresholds; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bail` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:2:14 [INFO] [stdout] | [INFO] [stdout] 2 | use anyhow::{bail, Result}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use bio::bio_types::annot::contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `motif::MotifLike`, `motif`, and `strand::Strand` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use utils::{motif, motif::MotifLike, pileup, strand::Strand}; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `collections::HashSet` and `hash::Hash` [INFO] [stdout] --> src/bin/rustymotif/search.rs:1:11 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{collections::HashSet, hash::Hash}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stdout] --> src/bin/rustymotif/search.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::bio_types::annot::contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ordered_float::OrderedFloat` [INFO] [stdout] --> src/bin/rustymotif/search.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use ordered_float::OrderedFloat; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `algo::min_spanning_tree` [INFO] [stdout] --> src/bin/rustymotif/search.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | algo::min_spanning_tree, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `pileup` [INFO] [stdout] --> src/bin/rustymotif/search.rs:20:80 [INFO] [stdout] | [INFO] [stdout] 20 | iupac::IupacBase, modtype::ModType, motif, motif::Motif, motif::MotifLike, pileup, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/bin/rustymotif/search.rs:23:13 [INFO] [stdout] | [INFO] [stdout] 23 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `anyhow::anyhow` [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use anyhow::anyhow; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/bin/rustymotif/model.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 8 | impl BetaBernoulliModel { [INFO] [stdout] | ----------------------- associated function in this implementation [INFO] [stdout] 9 | /// Create a new Beta-Bernoulli model with alpha=1.0, beta=1.0 [INFO] [stdout] 10 | pub fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `check_node` and `neighbors` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:421:12 [INFO] [stdout] | [INFO] [stdout] 395 | impl MotifGraph { [INFO] [stdout] | --------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 421 | pub fn check_node(&self, motif: &motif::Motif) -> bool { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 458 | pub fn neighbors(&self, motif: &motif::Motif) -> Option> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `score_log_odds_ratio` and `score_log_odds_ratio_z_score` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:493:8 [INFO] [stdout] | [INFO] [stdout] 488 | impl ScoreCalculator { [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 493 | fn score_log_odds_ratio( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 508 | fn score_log_odds_ratio_z_score( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `priority_log_odds_ratio` and `priority_log_odds_ratio_z_score` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:569:8 [INFO] [stdout] | [INFO] [stdout] 551 | impl PriorityCalculator { [INFO] [stdout] | ----------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 569 | fn priority_log_odds_ratio( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 583 | fn priority_log_odds_ratio_z_score( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `log_odds_ratio` is never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:598:4 [INFO] [stdout] | [INFO] [stdout] 598 | fn log_odds_ratio(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `log_odds_ratio_z_score` is never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:604:4 [INFO] [stdout] | [INFO] [stdout] 604 | fn log_odds_ratio_z_score(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `default` is never used [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:32:12 [INFO] [stdout] | [INFO] [stdout] 27 | impl MethylationThresholds { [INFO] [stdout] | -------------------------- associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 32 | pub fn default() -> Self { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `length` is never used [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:334:12 [INFO] [stdout] | [INFO] [stdout] 328 | impl PSSM { [INFO] [stdout] | --------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 334 | pub fn length(&self) -> usize { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 43s [INFO] running `Command { std: "docker" "inspect" "eb9604d5128251637f8e105fa907f73c32633d6a8dcfd07781746f3733caf994", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb9604d5128251637f8e105fa907f73c32633d6a8dcfd07781746f3733caf994", kill_on_drop: false }` [INFO] [stdout] eb9604d5128251637f8e105fa907f73c32633d6a8dcfd07781746f3733caf994 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b7402e4c8bd61bfac2f62c9e5f00df71ca4e7f3518b05dd652cbad0cf8968aa4 [INFO] running `Command { std: "docker" "start" "-a" "b7402e4c8bd61bfac2f62c9e5f00df71ca4e7f3518b05dd652cbad0cf8968aa4", kill_on_drop: false }` [INFO] [stderr] Compiling rustymotif v0.1.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stdout] --> src/lib/motif.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:7:11 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stdout] --> src/lib/motif.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:7:11 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `verbose` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:81:5 [INFO] [stdout] | [INFO] [stdout] 81 | verbose, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `normal` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:82:5 [INFO] [stdout] | [INFO] [stdout] 82 | normal, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `silent` should have an upper camel case name [INFO] [stdout] --> src/bin/rustymotif/cli.rs:83:5 [INFO] [stdout] | [INFO] [stdout] 83 | silent, [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sequence::Contig` [INFO] [stdout] --> src/bin/rustymotif/fasta_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::sequence::Contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::sequence::MethylationThresholds` [INFO] [stdout] --> src/bin/rustymotif/fasta_reader.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::sequence::MethylationThresholds; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bail` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:2:14 [INFO] [stdout] | [INFO] [stdout] 2 | use anyhow::{bail, Result}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use bio::bio_types::annot::contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `motif::MotifLike`, `motif`, and `strand::Strand` [INFO] [stdout] --> src/bin/rustymotif/motif_discovery.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use utils::{motif, motif::MotifLike, pileup, strand::Strand}; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `collections::HashSet` and `hash::Hash` [INFO] [stdout] --> src/bin/rustymotif/search.rs:1:11 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{collections::HashSet, hash::Hash}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stdout] --> src/bin/rustymotif/search.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use bio::bio_types::annot::contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ordered_float::OrderedFloat` [INFO] [stdout] --> src/bin/rustymotif/search.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use ordered_float::OrderedFloat; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `algo::min_spanning_tree` [INFO] [stdout] --> src/bin/rustymotif/search.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | algo::min_spanning_tree, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `pileup` [INFO] [stdout] --> src/bin/rustymotif/search.rs:20:80 [INFO] [stdout] | [INFO] [stdout] 20 | iupac::IupacBase, modtype::ModType, motif, motif::Motif, motif::MotifLike, pileup, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/bin/rustymotif/search.rs:23:13 [INFO] [stdout] | [INFO] [stdout] 23 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `anyhow::anyhow` [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use anyhow::anyhow; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:374:9 [INFO] [stdout] | [INFO] [stdout] 374 | use bio::bio_types::annot::contig; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/bin/rustymotif/model.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 8 | impl BetaBernoulliModel { [INFO] [stdout] | ----------------------- associated function in this implementation [INFO] [stdout] 9 | /// Create a new Beta-Bernoulli model with alpha=1.0, beta=1.0 [INFO] [stdout] 10 | pub fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `check_node` and `neighbors` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:421:12 [INFO] [stdout] | [INFO] [stdout] 395 | impl MotifGraph { [INFO] [stdout] | --------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 421 | pub fn check_node(&self, motif: &motif::Motif) -> bool { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 458 | pub fn neighbors(&self, motif: &motif::Motif) -> Option> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `score_log_odds_ratio` and `score_log_odds_ratio_z_score` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:493:8 [INFO] [stdout] | [INFO] [stdout] 488 | impl ScoreCalculator { [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 493 | fn score_log_odds_ratio( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 508 | fn score_log_odds_ratio_z_score( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `priority_log_odds_ratio` and `priority_log_odds_ratio_z_score` are never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:569:8 [INFO] [stdout] | [INFO] [stdout] 551 | impl PriorityCalculator { [INFO] [stdout] | ----------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 569 | fn priority_log_odds_ratio( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 583 | fn priority_log_odds_ratio_z_score( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `log_odds_ratio` is never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:598:4 [INFO] [stdout] | [INFO] [stdout] 598 | fn log_odds_ratio(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `log_odds_ratio_z_score` is never used [INFO] [stdout] --> src/bin/rustymotif/search.rs:604:4 [INFO] [stdout] | [INFO] [stdout] 604 | fn log_odds_ratio_z_score(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `length` is never used [INFO] [stdout] --> src/bin/rustymotif/sequence.rs:334:12 [INFO] [stdout] | [INFO] [stdout] 328 | impl PSSM { [INFO] [stdout] | --------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 334 | pub fn length(&self) -> usize { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.01s [INFO] running `Command { std: "docker" "inspect" "b7402e4c8bd61bfac2f62c9e5f00df71ca4e7f3518b05dd652cbad0cf8968aa4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7402e4c8bd61bfac2f62c9e5f00df71ca4e7f3518b05dd652cbad0cf8968aa4", kill_on_drop: false }` [INFO] [stdout] b7402e4c8bd61bfac2f62c9e5f00df71ca4e7f3518b05dd652cbad0cf8968aa4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e03baf0b83a3721af40d2df8f7a0dbb23d9a14fd73ff114d69a40b9303ca099f [INFO] running `Command { std: "docker" "start" "-a" "e03baf0b83a3721af40d2df8f7a0dbb23d9a14fd73ff114d69a40b9303ca099f", kill_on_drop: false }` [INFO] [stderr] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stderr] --> src/lib/motif.rs:3:18 [INFO] [stderr] | [INFO] [stderr] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stderr] --> src/lib/pileup.rs:7:11 [INFO] [stderr] | [INFO] [stderr] 7 | use log::{debug, info, warn}; [INFO] [stderr] | ^^^^^ ^^^^ ^^^^ [INFO] [stderr] [INFO] [stderr] warning: `rustymotif` (lib) generated 2 warnings (run `cargo fix --lib -p rustymotif` to apply 2 suggestions) [INFO] [stderr] warning: `rustymotif` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] warning: variant `verbose` should have an upper camel case name [INFO] [stderr] --> src/bin/rustymotif/cli.rs:81:5 [INFO] [stderr] | [INFO] [stderr] 81 | verbose, [INFO] [stderr] | ^^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Verbose` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variant `normal` should have an upper camel case name [INFO] [stderr] --> src/bin/rustymotif/cli.rs:82:5 [INFO] [stderr] | [INFO] [stderr] 82 | normal, [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper camel case: `Normal` [INFO] [stderr] [INFO] [stderr] warning: variant `silent` should have an upper camel case name [INFO] [stderr] --> src/bin/rustymotif/cli.rs:83:5 [INFO] [stderr] | [INFO] [stderr] 83 | silent, [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper camel case (notice the capitalization): `Silent` [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::sequence::Contig` [INFO] [stderr] --> src/bin/rustymotif/fasta_reader.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use crate::sequence::Contig; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::sequence::MethylationThresholds` [INFO] [stderr] --> src/bin/rustymotif/fasta_reader.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use crate::sequence::MethylationThresholds; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bail` [INFO] [stderr] --> src/bin/rustymotif/motif_discovery.rs:2:14 [INFO] [stderr] | [INFO] [stderr] 2 | use anyhow::{bail, Result}; [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stderr] --> src/bin/rustymotif/motif_discovery.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use bio::bio_types::annot::contig; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `motif::MotifLike`, `motif`, and `strand::Strand` [INFO] [stderr] --> src/bin/rustymotif/motif_discovery.rs:6:13 [INFO] [stderr] | [INFO] [stderr] 6 | use utils::{motif, motif::MotifLike, pileup, strand::Strand}; [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `collections::HashSet` and `hash::Hash` [INFO] [stderr] --> src/bin/rustymotif/search.rs:1:11 [INFO] [stderr] | [INFO] [stderr] 1 | use std::{collections::HashSet, hash::Hash}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stderr] --> src/bin/rustymotif/search.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | use bio::bio_types::annot::contig; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ordered_float::OrderedFloat` [INFO] [stderr] --> src/bin/rustymotif/search.rs:12:5 [INFO] [stderr] | [INFO] [stderr] 12 | use ordered_float::OrderedFloat; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `algo::min_spanning_tree` [INFO] [stderr] --> src/bin/rustymotif/search.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | algo::min_spanning_tree, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `pileup` [INFO] [stderr] --> src/bin/rustymotif/search.rs:20:80 [INFO] [stderr] | [INFO] [stderr] 20 | iupac::IupacBase, modtype::ModType, motif, motif::Motif, motif::MotifLike, pileup, [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Deserialize` [INFO] [stderr] --> src/bin/rustymotif/search.rs:23:13 [INFO] [stderr] | [INFO] [stderr] 23 | use serde::{Deserialize, Serialize}; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `anyhow::anyhow` [INFO] [stderr] --> src/bin/rustymotif/sequence.rs:6:5 [INFO] [stderr] | [INFO] [stderr] 6 | use anyhow::anyhow; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::bio_types::annot::contig` [INFO] [stderr] --> src/bin/rustymotif/sequence.rs:374:9 [INFO] [stderr] | [INFO] [stderr] 374 | use bio::bio_types::annot::contig; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function `new` is never used [INFO] [stderr] --> src/bin/rustymotif/model.rs:10:12 [INFO] [stderr] | [INFO] [stderr] 8 | impl BetaBernoulliModel { [INFO] [stderr] | ----------------------- associated function in this implementation [INFO] [stderr] 9 | /// Create a new Beta-Bernoulli model with alpha=1.0, beta=1.0 [INFO] [stderr] 10 | pub fn new() -> Self { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: methods `check_node` and `neighbors` are never used [INFO] [stderr] --> src/bin/rustymotif/search.rs:421:12 [INFO] [stderr] | [INFO] [stderr] 395 | impl MotifGraph { [INFO] [stderr] | --------------- methods in this implementation [INFO] [stderr] ... [INFO] [stderr] 421 | pub fn check_node(&self, motif: &motif::Motif) -> bool { [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 458 | pub fn neighbors(&self, motif: &motif::Motif) -> Option> { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: methods `score_log_odds_ratio` and `score_log_odds_ratio_z_score` are never used [INFO] [stderr] --> src/bin/rustymotif/search.rs:493:8 [INFO] [stderr] | [INFO] [stderr] 488 | impl ScoreCalculator { [INFO] [stderr] | -------------------- methods in this implementation [INFO] [stderr] ... [INFO] [stderr] 493 | fn score_log_odds_ratio( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 508 | fn score_log_odds_ratio_z_score( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: methods `priority_log_odds_ratio` and `priority_log_odds_ratio_z_score` are never used [INFO] [stderr] --> src/bin/rustymotif/search.rs:569:8 [INFO] [stderr] | [INFO] [stderr] 551 | impl PriorityCalculator { [INFO] [stderr] | ----------------------- methods in this implementation [INFO] [stderr] ... [INFO] [stderr] 569 | fn priority_log_odds_ratio( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 583 | fn priority_log_odds_ratio_z_score( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `log_odds_ratio` is never used [INFO] [stderr] --> src/bin/rustymotif/search.rs:598:4 [INFO] [stderr] | [INFO] [stderr] 598 | fn log_odds_ratio(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `log_odds_ratio_z_score` is never used [INFO] [stderr] --> src/bin/rustymotif/search.rs:604:4 [INFO] [stderr] | [INFO] [stderr] 604 | fn log_odds_ratio_z_score(p1: f64, p2: f64, q1: f64, q2: f64, psudo_count: f64) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method `length` is never used [INFO] [stderr] --> src/bin/rustymotif/sequence.rs:334:12 [INFO] [stderr] | [INFO] [stderr] 328 | impl PSSM { [INFO] [stderr] | --------- method in this implementation [INFO] [stderr] ... [INFO] [stderr] 334 | pub fn length(&self) -> usize { [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `rustymotif` (bin "rustymotif" test) generated 23 warnings (run `cargo fix --bin "rustymotif" --tests` to apply 13 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s [INFO] [stderr] Running unittests src/lib/lib.rs (/opt/rustwide/target/debug/deps/utils-8255be32bc4e30f3) [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test iupac::tests::test_to_regex ... ok [INFO] [stdout] test modtype::tests::test_display ... ok [INFO] [stdout] test modtype::tests::test_from_str ... ok [INFO] [stdout] test iupac::tests::test_complement ... ok [INFO] [stdout] test motif::tests::test_motif_pair_new ... ok [INFO] [stdout] test modtype::tests::test_from_str_error ... ok [INFO] [stdout] test motif::tests::test_reverse_complement ... ok [INFO] [stdout] test modtype::tests::test_to_pileup_code ... ok [INFO] [stdout] test motif::tests::test_motif_grow_motif_at ... ok [INFO] [stdout] test pileup::tests::test_low_coverage_filtering ... ok [INFO] [stdout] test pileup::tests::test_n_chunks ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_chunk ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_chunk_reader ... ok [INFO] [stdout] test pileup::tests::test_new_pileup_record ... ok [INFO] [stdout] test pileup::tests::test_parse_and_validate_record ... ok [INFO] [stdout] test motif::tests::test_new ... ok [INFO] [stdout] test pileup::tests::test_with_tempfile ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/rustymotif/main.rs (/opt/rustwide/target/debug/deps/rustymotif-b02965546b17f3b7) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test sequence::tests::test_contig_add_record ... ok [INFO] [stdout] test sequence::tests::test_contig_add_records ... ok [INFO] [stdout] test sequence::tests::test_contig_extract_subsequences ... ok [INFO] [stdout] test sequence::tests::test_equal_length_dna_set_pssm ... ok [INFO] [stdout] test sequence::tests::test_contig_populate_methylation_levels ... ok [INFO] [stdout] test sequence::tests::test_equal_length_dna_set_empty ... ok [INFO] [stdout] test sequence::tests::test_equal_length_dna_set_get_motif_matching_sequences ... ok [INFO] [stdout] test sequence::tests::test_pssm_kl_divergence ... ok [INFO] [stdout] test sequence::tests::test_contig_find_motif_indices ... ok [INFO] [stdout] test data::tests::test_genome_workspace_builder ... ok [INFO] [stderr] Doc-tests utils [INFO] [stdout] test sequence::tests::test_equal_length_dna_set_reverse_complement ... ok [INFO] [stdout] test sequence::tests::test_equal_length_dna_set_new ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e03baf0b83a3721af40d2df8f7a0dbb23d9a14fd73ff114d69a40b9303ca099f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e03baf0b83a3721af40d2df8f7a0dbb23d9a14fd73ff114d69a40b9303ca099f", kill_on_drop: false }` [INFO] [stdout] e03baf0b83a3721af40d2df8f7a0dbb23d9a14fd73ff114d69a40b9303ca099f