[INFO] cloning repository https://github.com/SciLifeLab/umi-transfer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SciLifeLab/umi-transfer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ed0f04e6a50bfd34424d5a39f867c4b545dc2fbe
[INFO] testing SciLifeLab/umi-transfer against try#17092ad00ed8fe1e7f81a7e38238ff70779034b1 for pr-140985
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/SciLifeLab/umi-transfer on toolchain 17092ad00ed8fe1e7f81a7e38238ff70779034b1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] finished tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] tweaked toml for git repo https://github.com/SciLifeLab/umi-transfer written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/SciLifeLab/umi-transfer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 11498e450ce737547d68ca4a8e3159d130c035a883e75405af83f17bfb0714a9
[INFO] running `Command { std: "docker" "start" "-a" "11498e450ce737547d68ca4a8e3159d130c035a883e75405af83f17bfb0714a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "11498e450ce737547d68ca4a8e3159d130c035a883e75405af83f17bfb0714a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "11498e450ce737547d68ca4a8e3159d130c035a883e75405af83f17bfb0714a9", kill_on_drop: false }`
[INFO] [stdout] 11498e450ce737547d68ca4a8e3159d130c035a883e75405af83f17bfb0714a9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8bfb457f3c6080e84a2beeb33431aa431c68f742eaba1628718666cbd30166c8
[INFO] running `Command { std: "docker" "start" "-a" "8bfb457f3c6080e84a2beeb33431aa431c68f742eaba1628718666cbd30166c8", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.81
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[INFO] [stderr]    Compiling fastrand v2.1.0
[INFO] [stderr]    Compiling futures-sink v0.3.30
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling supports-color v2.1.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling bit-set v0.5.3
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling ordered-float v3.9.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling core_affinity v0.8.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling zeroize v1.7.0
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling strum v0.25.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling shell-words v1.1.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytes v1.6.0
[INFO] [stderr]    Compiling owo-colors v4.0.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling file-format v0.24.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling libdeflater v0.12.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.199
[INFO] [stderr]    Compiling thiserror-impl v1.0.59
[INFO] [stderr]    Compiling pin-project-internal v1.1.5
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling pin-project v1.1.5
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling dialoguer v0.11.0
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling multimap v0.9.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling umi-transfer v1.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 42.30s
[INFO] running `Command { std: "docker" "inspect" "8bfb457f3c6080e84a2beeb33431aa431c68f742eaba1628718666cbd30166c8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8bfb457f3c6080e84a2beeb33431aa431c68f742eaba1628718666cbd30166c8", kill_on_drop: false }`
[INFO] [stdout] 8bfb457f3c6080e84a2beeb33431aa431c68f742eaba1628718666cbd30166c8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 522a31f9e6be4f0024cfad1a3dabff50bd6c2ae4b7a9f05d482142e1aa0e2c92
[INFO] running `Command { std: "docker" "start" "-a" "522a31f9e6be4f0024cfad1a3dabff50bd6c2ae4b7a9f05d482142e1aa0e2c92", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling predicates-core v1.0.6
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling float-cmp v0.9.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling termtree v0.4.1
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling assert_cmd v2.0.14
[INFO] [stderr]    Compiling pin-utils v0.1.0
[INFO] [stderr]    Compiling comma v1.0.0
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling predicates-tree v1.0.9
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling is-terminal v0.4.12
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling nix v0.25.1
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling core_affinity v0.8.1
[INFO] [stderr]    Compiling supports-color v2.1.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling owo-colors v4.0.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling dialoguer v0.11.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling predicates v3.1.0
[INFO] [stderr]    Compiling rexpect v0.5.0
[INFO] [stderr]    Compiling globset v0.4.14
[INFO] [stderr]    Compiling ignore v0.4.22
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling assert_fs v1.1.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling umi-transfer v1.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 28.42s
[INFO] running `Command { std: "docker" "inspect" "522a31f9e6be4f0024cfad1a3dabff50bd6c2ae4b7a9f05d482142e1aa0e2c92", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "522a31f9e6be4f0024cfad1a3dabff50bd6c2ae4b7a9f05d482142e1aa0e2c92", kill_on_drop: false }`
[INFO] [stdout] 522a31f9e6be4f0024cfad1a3dabff50bd6c2ae4b7a9f05d482142e1aa0e2c92
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eea15d5475069c3ef791f10c2c6b5af2ee421ef2da1e680ecce1cba46243983b" "/opt/rustwide/cargo-home/bin/cargo" "+17092ad00ed8fe1e7f81a7e38238ff70779034b1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4b5dabaae38b3be4f8c250bd013a306e7d6b18ff533d8f78229f41b90d85245d
[INFO] running `Command { std: "docker" "start" "-a" "4b5dabaae38b3be4f8c250bd013a306e7d6b18ff533d8f78229f41b90d85245d", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/umi_transfer-2ff0185da58b35f2)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test auxiliary::tests::test_threads_per_task_splits_even_threads_correctly ... ok
[INFO] [stdout] test auxiliary::tests::test_threads_available_returns_positive_number ... ok
[INFO] [stdout] test auxiliary::tests::test_threads_per_task_never_returns_less_than_one ... ok
[INFO] [stdout] test auxiliary::tests::test_threads_per_task_splits_odd_threads_correctly ... ok
[INFO] [stdout] test file_io::tests::test_check_outputpath_new_file ... ok
[INFO] [stdout] test file_io::tests::test_check_outputpath_existing_file_with_force ... ok
[INFO] [stdout] test file_io::tests::test_rectify_extension ... ok
[INFO] [stdout] test file_io::tests::test_correctly_derive_output_name ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/auxiliary.rs (/opt/rustwide/target/debug/deps/auxiliary-5a2e9ba7283aa58e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests_external.rs (/opt/rustwide/target/debug/deps/integration_tests_external-172c4ce1fbfe419b)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test external_fails_without_arguments ... ok
[INFO] [stdout] test external_with_minimal_arguments_plain ... ok
[INFO] [stdout] test external_succeeds_with_existing_output_file_and_force ... ok
[INFO] [stdout] test external_with_output_gz_suffix_no_compression ... ok
[INFO] [stdout] test external_with_output_no_gz_suffix_compression ... ok
[INFO] [stdout] test external_with_minimal_arguments_compressed ... ok
[INFO] [stdout] test external_fails_with_nonexisting_output_file ... ok
[INFO] [stdout] test external_fails_on_read_id_mismatch ... ok
[INFO] [stdout] test external_fails_with_existing_output_file_and_no_force ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.22s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests_external_filecontents.rs (/opt/rustwide/target/debug/deps/integration_tests_external_filecontents-368abee7a8f0c02a)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test testing_file_verification_succeeds ... ok
[INFO] [stdout] test external_corrects_read_numbers_in_output ... ok
[INFO] [stdout] test external_produces_correct_compressed_output_thread_limit ... ok
[INFO] [stdout] test testing_file_comparison_succeeds ... ok
[INFO] [stdout] test external_produces_correct_output ... ok
[INFO] [stdout] test external_switch_umi_and_read2 ... ok
[INFO] [stdout] test external_produces_correct_compressed_output ... ok
[INFO] [stdout] test external_produces_correct_compressed_output_mod_compression_level ... ok
[INFO] [stdout] test external_underscore_delimiter ... ok
[INFO] [stdout] test testing_file_verification_fails - should panic ... ok
[INFO] [stdout] test testing_file_comparison_fails - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests_main.rs (/opt/rustwide/target/debug/deps/integration_tests_main-af5502ab26235e0a)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test main_help_prints_help ... ok
[INFO] [stdout] test main_without_arguments_prints_help ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4b5dabaae38b3be4f8c250bd013a306e7d6b18ff533d8f78229f41b90d85245d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4b5dabaae38b3be4f8c250bd013a306e7d6b18ff533d8f78229f41b90d85245d", kill_on_drop: false }`
[INFO] [stdout] 4b5dabaae38b3be4f8c250bd013a306e7d6b18ff533d8f78229f41b90d85245d