[INFO] cloning repository https://github.com/Inuen/biogenie [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Inuen/biogenie" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d259c3c3e880d281a06dc512d414a0bab9d0dc34 [INFO] checking Inuen/biogenie/d259c3c3e880d281a06dc512d414a0bab9d0dc34 against master#667247db71ea18c4130dd018d060e7f09d589490 for pr-140824 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Inuen/biogenie on toolchain 667247db71ea18c4130dd018d060e7f09d589490 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+667247db71ea18c4130dd018d060e7f09d589490" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Inuen/biogenie [INFO] finished tweaking git repo https://github.com/Inuen/biogenie [INFO] tweaked toml for git repo https://github.com/Inuen/biogenie written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/Inuen/biogenie already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+667247db71ea18c4130dd018d060e7f09d589490" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bitap v0.2.0 [INFO] [stderr] Downloaded core_affinity v0.8.3 [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded libdeflater v0.12.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded nucgen v0.1.2 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded bio v2.2.0 [INFO] [stderr] Downloaded libdeflate-sys v0.12.0 [INFO] [stderr] Downloaded gzp v0.11.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+667247db71ea18c4130dd018d060e7f09d589490" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 82df5e5a64bd22208c6ff826832ef4f4084c97b1c342eddc3e40343011386647 [INFO] running `Command { std: "docker" "start" "-a" "82df5e5a64bd22208c6ff826832ef4f4084c97b1c342eddc3e40343011386647", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "82df5e5a64bd22208c6ff826832ef4f4084c97b1c342eddc3e40343011386647", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82df5e5a64bd22208c6ff826832ef4f4084c97b1c342eddc3e40343011386647", kill_on_drop: false }` [INFO] [stdout] 82df5e5a64bd22208c6ff826832ef4f4084c97b1c342eddc3e40343011386647 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+667247db71ea18c4130dd018d060e7f09d589490" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 47b59079307eb85c0aa6676e769ccdcd647e9784deaa21ab75a7af7e0501f6ae [INFO] running `Command { std: "docker" "start" "-a" "47b59079307eb85c0aa6676e769ccdcd647e9784deaa21ab75a7af7e0501f6ae", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.170 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling serde v1.0.218 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling getrandom v0.3.1 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Checking bytemuck v1.22.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling cc v1.2.16 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling zerocopy v0.8.23 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking wide v0.7.32 [INFO] [stderr] Compiling anyhow v1.0.97 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking clap_builder v4.5.31 [INFO] [stderr] Checking hashbrown v0.15.2 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Checking futures-core v0.3.31 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling quote v1.0.39 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking bytes v1.10.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Compiling syn v2.0.99 [INFO] [stderr] Checking half v2.5.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking rayon-core v1.12.1 [INFO] [stderr] Checking unchecked-index v0.2.2 [INFO] [stderr] Checking ciborium-io v0.2.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Checking time v0.1.45 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking nanorand v0.7.0 [INFO] [stderr] Checking indexmap v2.7.1 [INFO] [stderr] Checking core_affinity v0.8.3 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking plotters-backend v0.3.7 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking twoway v0.2.2 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Compiling libz-sys v1.1.21 [INFO] [stderr] Compiling libdeflate-sys v0.12.0 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Checking plotters-svg v0.3.7 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking timeit v0.1.2 [INFO] [stderr] Checking cast v0.3.0 [INFO] [stderr] Checking rustc-hash v2.1.1 [INFO] [stderr] Checking bitap v0.2.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking is-terminal v0.4.16 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking oorandom v11.1.5 [INFO] [stderr] Checking anes v0.1.6 [INFO] [stderr] Checking petgraph v0.7.1 [INFO] [stderr] Checking criterion-plot v0.5.0 [INFO] [stderr] Checking libdeflater v0.12.0 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.218 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling pin-project-internal v1.1.10 [INFO] [stderr] Compiling clap_derive v4.5.28 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking pin-project v1.1.10 [INFO] [stderr] Checking flume v0.10.14 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking clap v4.5.31 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand v0.9.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking flate2 v1.1.0 [INFO] [stderr] Checking gzp v0.11.3 [INFO] [stderr] Checking nucgen v0.1.2 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v2.2.0 [INFO] [stderr] Checking biogenie v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `remove_using_bitap` [INFO] [stdout] --> benches/compare_benchmarks.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | remove_using_bitap, remove_using_two_way, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fmt::Debug` [INFO] [stdout] --> benches/compare_benchmarks.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use std::fmt::Debug; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> benches/compare_benchmarks.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 01s [INFO] running `Command { std: "docker" "inspect" "47b59079307eb85c0aa6676e769ccdcd647e9784deaa21ab75a7af7e0501f6ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47b59079307eb85c0aa6676e769ccdcd647e9784deaa21ab75a7af7e0501f6ae", kill_on_drop: false }` [INFO] [stdout] 47b59079307eb85c0aa6676e769ccdcd647e9784deaa21ab75a7af7e0501f6ae