[INFO] cloning repository https://github.com/iarpa-felix/simsplice [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/iarpa-felix/simsplice" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8c091af199126d4f3f807d1275c1dc167e0f9efe [INFO] checking iarpa-felix/simsplice against try#bf5ff6675cf10ce009ac02007b064a7cfc4509ac for pr-140558 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/iarpa-felix/simsplice on toolchain bf5ff6675cf10ce009ac02007b064a7cfc4509ac [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bf5ff6675cf10ce009ac02007b064a7cfc4509ac" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] finished tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] tweaked toml for git repo https://github.com/iarpa-felix/simsplice written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/iarpa-felix/simsplice already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bf5ff6675cf10ce009ac02007b064a7cfc4509ac" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] warning: failed to write cache, path: /workspace/cargo-home/registry/index/index.crates.io-1949cf8c6b5b557f/.cache/bi/gt/bigtools, error: No space left on device (os error 28) [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded indenter v0.3.0 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded eyre v0.6.3 [INFO] [stderr] Downloaded duct v0.13.4 [INFO] [stderr] Downloaded interpol v0.2.1 [INFO] [stderr] Downloaded wildmatch v1.0.12 [INFO] [stderr] Downloaded byteordered v0.5.0 [INFO] [stderr] Downloaded triple_accel v0.3.4 [INFO] [stderr] Downloaded bytecount v0.6.1 [INFO] [stderr] Downloaded shared_child v0.3.4 [INFO] [stderr] Downloaded owo-colors v1.1.3 [INFO] [stderr] Downloaded rust-htslib v0.35.2 [INFO] [stderr] Downloaded libdeflater v0.5.0 [INFO] [stderr] Downloaded bio v0.32.0 [INFO] [stderr] error: failed to unpack package `bio v0.32.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack entry at `bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `/workspace/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `bio-0.32.0/src/alignment/pairwise/mod.rs` into `/workspace/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] checking iarpa-felix/simsplice against try#bf5ff6675cf10ce009ac02007b064a7cfc4509ac for pr-140558 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] fatal: sha1 file '/workspace/builds/worker-6-tc2/source/.git/index.lock' write error. Out of diskspace [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking iarpa-felix/simsplice against try#bf5ff6675cf10ce009ac02007b064a7cfc4509ac for pr-140558 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/iarpa-felix/simsplice on toolchain bf5ff6675cf10ce009ac02007b064a7cfc4509ac [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bf5ff6675cf10ce009ac02007b064a7cfc4509ac" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] finished tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] tweaked toml for git repo https://github.com/iarpa-felix/simsplice written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/iarpa-felix/simsplice already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bf5ff6675cf10ce009ac02007b064a7cfc4509ac" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] error: failed to download `bio v0.32.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] unable to get packages from source [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack package `bio v0.32.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack entry at `bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `/workspace/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `bio-0.32.0/src/alignment/pairwise/mod.rs` into `/workspace/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-0.32.0/src/alignment/pairwise/mod.rs` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] checking iarpa-felix/simsplice against try#bf5ff6675cf10ce009ac02007b064a7cfc4509ac for pr-140558 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] fatal: sha1 file '/workspace/builds/worker-6-tc2/source/.git/index.lock' write error. Out of diskspace [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking iarpa-felix/simsplice against try#bf5ff6675cf10ce009ac02007b064a7cfc4509ac for pr-140558 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] error: unable to write file sort-hash-fastq.sh [INFO] [stderr] error: unable to write file src/simsplice.rs [INFO] [stderr] fatal: unable to checkout working tree [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] failed to checkout https://github.com/iarpa-felix/simsplice Caused by: command failed: exit status: 128