[INFO] cloning repository https://github.com/thibautflottat/amosutoRS [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/thibautflottat/amosutoRS" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fthibautflottat%2FamosutoRS", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fthibautflottat%2FamosutoRS'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1648ccfc5ce4e175601c442750587ffa3629c47d [INFO] checking thibautflottat/amosutoRS against master#0e517d38ad0e72f93c734b14fabd4bb9b7441de6 for pr-140557-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fthibautflottat%2FamosutoRS" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/thibautflottat/amosutoRS on toolchain 0e517d38ad0e72f93c734b14fabd4bb9b7441de6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/thibautflottat/amosutoRS [INFO] finished tweaking git repo https://github.com/thibautflottat/amosutoRS [INFO] tweaked toml for git repo https://github.com/thibautflottat/amosutoRS written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/thibautflottat/amosutoRS already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded thiserror-impl v1.0.69 [INFO] [stderr] Downloaded spdlog-macros v0.2.0 [INFO] [stderr] Downloaded android_system_properties v0.1.5 [INFO] [stderr] Downloaded anstyle-parse v0.2.6 [INFO] [stderr] Downloaded wasm-bindgen-macro v0.2.100 [INFO] [stderr] Downloaded ppv-lite86 v0.2.21 [INFO] [stderr] Downloaded dyn-clone v1.0.19 [INFO] [stderr] Downloaded cmake v0.1.54 [INFO] [stderr] Downloaded anstyle-wincon v3.0.7 [INFO] [stderr] Downloaded anstream v0.6.18 [INFO] [stderr] Downloaded chemfiles v0.10.41 [INFO] [stderr] Downloaded clap_derive v4.5.32 [INFO] [stderr] Downloaded r-efi v5.2.0 [INFO] [stderr] Downloaded zerocopy-derive v0.8.24 [INFO] [stderr] Downloaded rand v0.9.0 [INFO] [stderr] Downloaded cc v1.2.17 [INFO] [stderr] Downloaded wasi v0.14.2+wasi-0.2.4 [INFO] [stderr] Downloaded clap_builder v4.5.32 [INFO] [stderr] Downloaded rayon v1.10.0 [INFO] [stderr] Downloaded nom v7.1.3 [INFO] [stderr] Downloaded bumpalo v3.17.0 [INFO] [stderr] Downloaded chrono v0.4.40 [INFO] [stderr] Downloaded zerocopy v0.8.24 [INFO] [stderr] Downloaded syn v2.0.100 [INFO] [stderr] Downloaded minimal-lexical v0.2.1 [INFO] [stderr] Downloaded glam v0.25.0 [INFO] [stderr] Downloaded rustfft v6.2.0 [INFO] [stderr] Downloaded rayon-core v1.12.1 [INFO] [stderr] Downloaded arc-swap v1.7.1 [INFO] [stderr] Downloaded js-sys v0.3.77 [INFO] [stderr] Downloaded windows_aarch64_gnullvm v0.52.6 [INFO] [stderr] Downloaded windows_x86_64_gnullvm v0.52.6 [INFO] [stderr] Downloaded windows_i686_gnullvm v0.52.6 [INFO] [stderr] Downloaded log v0.4.26 [INFO] [stderr] Downloaded wasm-bindgen v0.2.100 [INFO] [stderr] Downloaded once_cell v1.21.1 [INFO] [stderr] Downloaded strum_macros v0.24.3 [INFO] [stderr] Downloaded spdlog-rs v0.4.1 [INFO] [stderr] Downloaded clap v4.5.32 [INFO] [stderr] Downloaded crossbeam-epoch v0.9.18 [INFO] [stderr] Downloaded transpose v0.2.3 [INFO] [stderr] Downloaded core-foundation-sys v0.8.7 [INFO] [stderr] Downloaded windows-core v0.52.0 [INFO] [stderr] Downloaded num-traits v0.2.19 [INFO] [stderr] Downloaded num-complex v0.4.6 [INFO] [stderr] Downloaded windows_aarch64_msvc v0.52.6 [INFO] [stderr] Downloaded wasm-bindgen-backend v0.2.100 [INFO] [stderr] Downloaded windows_i686_msvc v0.52.6 [INFO] [stderr] Downloaded windows_x86_64_gnu v0.52.6 [INFO] [stderr] Downloaded windows_i686_gnu v0.52.6 [INFO] [stderr] Downloaded windows_x86_64_msvc v0.52.6 [INFO] [stderr] Downloaded libc v0.2.171 [INFO] [stderr] Downloaded semver v1.0.26 [INFO] [stderr] Downloaded rand_core v0.9.3 [INFO] [stderr] Downloaded rustversion v1.0.20 [INFO] [stderr] Downloaded is_terminal_polyfill v1.70.1 [INFO] [stderr] Downloaded android-tzdata v0.1.1 [INFO] [stderr] Downloaded iana-time-zone v0.1.61 [INFO] [stderr] Downloaded wasm-bindgen-macro-support v0.2.100 [INFO] [stderr] Downloaded hermit-abi v0.5.0 [INFO] [stderr] Downloaded spin v0.9.8 [INFO] [stderr] Downloaded colorchoice v1.0.3 [INFO] [stderr] Downloaded wit-bindgen-rt v0.39.0 [INFO] [stderr] Downloaded crossbeam-deque v0.8.6 [INFO] [stderr] Downloaded strength_reduce v0.2.4 [INFO] [stderr] Downloaded if_chain v1.0.2 [INFO] [stderr] Downloaded is-terminal v0.4.16 [INFO] [stderr] Downloaded rustc_version v0.4.1 [INFO] [stderr] Downloaded heck v0.4.1 [INFO] [stderr] Downloaded spdlog-internal v0.1.0 [INFO] [stderr] Downloaded anstyle-query v1.1.2 [INFO] [stderr] Downloaded utf8parse v0.2.2 [INFO] [stderr] Downloaded anstyle v1.0.10 [INFO] [stderr] Downloaded clap_lex v0.7.4 [INFO] [stderr] Downloaded strsim v0.11.1 [INFO] [stderr] Downloaded heck v0.5.0 [INFO] [stderr] Downloaded rand_chacha v0.9.0 [INFO] [stderr] Downloaded windows-sys v0.59.0 [INFO] [stderr] Downloaded either v1.15.0 [INFO] [stderr] Downloaded primal-check v0.3.4 [INFO] [stderr] Downloaded num-integer v0.1.46 [INFO] [stderr] Downloaded atomic v0.5.3 [INFO] [stderr] Downloaded wasm-bindgen-shared v0.2.100 [INFO] [stderr] Downloaded strum v0.24.1 [INFO] [stderr] Downloaded scopeguard v1.2.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.94 [INFO] [stderr] Downloaded thiserror v1.0.69 [INFO] [stderr] Downloaded iana-time-zone-haiku v0.1.2 [INFO] [stderr] Downloaded windows-link v0.1.1 [INFO] [stderr] Downloaded windows-targets v0.52.6 [INFO] [stderr] Downloaded lock_api v0.4.12 [INFO] [stderr] Downloaded chemfiles-sys v0.10.41 [INFO] [stderr] Downloaded molly v0.3.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fd2ac00fc258e81c62235d61a496a0f6d9dd5d25080c4633e6ed9a7b3fd8a3b8 [INFO] running `Command { std: "docker" "start" "-a" "fd2ac00fc258e81c62235d61a496a0f6d9dd5d25080c4633e6ed9a7b3fd8a3b8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fd2ac00fc258e81c62235d61a496a0f6d9dd5d25080c4633e6ed9a7b3fd8a3b8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fd2ac00fc258e81c62235d61a496a0f6d9dd5d25080c4633e6ed9a7b3fd8a3b8", kill_on_drop: false }` [INFO] [stdout] fd2ac00fc258e81c62235d61a496a0f6d9dd5d25080c4633e6ed9a7b3fd8a3b8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0eff34f618e713ec976d83dbff89f5fad374ed8ea9239ea484222327201d6139 [INFO] running `Command { std: "docker" "start" "-a" "0eff34f618e713ec976d83dbff89f5fad374ed8ea9239ea484222327201d6139", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling semver v1.0.26 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling getrandom v0.3.2 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Compiling cc v1.2.17 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking iana-time-zone v0.1.61 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking arc-swap v1.7.1 [INFO] [stderr] Checking glam v0.25.0 [INFO] [stderr] Checking dyn-clone v1.0.19 [INFO] [stderr] Checking if_chain v1.0.2 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling spdlog-rs v0.4.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Checking clap_builder v4.5.32 [INFO] [stderr] Checking atomic v0.5.3 [INFO] [stderr] Checking once_cell v1.21.1 [INFO] [stderr] Compiling rustfft v6.2.0 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Checking is-terminal v0.4.16 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Compiling chemfiles-sys v0.10.41 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking chrono v0.4.40 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking primal-check v0.3.4 [INFO] [stderr] Checking transpose v0.2.3 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand v0.9.0 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling strum v0.24.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling clap_derive v4.5.32 [INFO] [stderr] Compiling spdlog-internal v0.1.0 [INFO] [stderr] Compiling spdlog-macros v0.2.0 [INFO] [stderr] Checking clap v4.5.32 [INFO] [stderr] Checking molly v0.3.3 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-4515edb0c544430a/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.10.41/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz [INFO] [stderr] -- failed to download prebuilt chemfiles, building from sources [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done (42.5s) [INFO] [stderr] -- Generating done (0.1s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build" && LC_ALL="C" MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "/opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build" "--target" "install" "--config" "Debug" [INFO] [stderr] [ 1%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 1%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 2%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o [INFO] [stderr] [ 2%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 3%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/dict.c.o [INFO] [stderr] [ 3%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 3%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/coder.c.o [INFO] [stderr] [ 3%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o [INFO] [stderr] [ 4%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 5%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o [INFO] [stderr] [ 6%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 6%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/fixpoint.c.o [INFO] [stderr] [ 7%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 7%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.c.o [INFO] [stderr] [ 8%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 9%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 11%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o [INFO] [stderr] [ 11%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o [INFO] [stderr] [ 11%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.c.o [INFO] [stderr] [ 12%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] [ 14%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 13%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o [INFO] [stderr] [ 14%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o [INFO] [stderr] [ 15%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o [INFO] [stderr] [ 15%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o [INFO] [stderr] [ 15%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/psfplugin.c.o [INFO] [stderr] [ 15%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o [INFO] [stderr] [ 16%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o [INFO] [stderr] [ 17%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o [INFO] [stderr] [ 18%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/randtable.c.o [INFO] [stderr] [ 19%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o [INFO] [stderr] [ 19%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_fast.c.o [INFO] [stderr] [ 20%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/merge_sort.c.o [INFO] [stderr] [ 20%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/lz77.c.o [INFO] [stderr] [ 20%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/compress.c.o [INFO] [stderr] [ 20%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.c.o [INFO] [stderr] [ 21%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_table.c.o [INFO] [stderr] [ 22%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/sha256.c.o [INFO] [stderr] [ 23%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.c.o [INFO] [stderr] [ 23%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o [INFO] [stderr] [ 23%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/mtf.c.o [INFO] [stderr] [ 24%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/decompress.c.o [INFO] [stderr] [ 24%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_decoder.c.o [INFO] [stderr] [ 25%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o [INFO] [stderr] [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_encoder.c.o [INFO] [stderr] [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeFiles/bzip2.dir/bzlib.c.o [INFO] [stderr] [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/tng_compress.c.o [INFO] [stderr] [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/auto_decoder.c.o [INFO] [stderr] [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o [INFO] [stderr] [ 27%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o [INFO] [stderr] [ 28%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_decoder.c.o [INFO] [stderr] [ 28%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_encoder.c.o [INFO] [stderr] [ 28%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o [INFO] [stderr] [ 29%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_decoder.c.o [INFO] [stderr] [ 30%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.c.o [INFO] [stderr] [ 30%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_encoder.c.o [INFO] [stderr] [ 30%] Built target molfiles [INFO] [stderr] [ 31%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/vals16.c.o [INFO] [stderr] [ 32%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_decoder.c.o [INFO] [stderr] [ 33%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o [INFO] [stderr] [ 33%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.c.o [INFO] [stderr] [ 33%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/warnmalloc.c.o [INFO] [stderr] [ 33%] Built target bzip2 [INFO] [stderr] [ 34%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_encoder.c.o [INFO] [stderr] [ 35%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o [INFO] [stderr] [ 35%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o [INFO] [stderr] [ 36%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o [INFO] [stderr] [ 37%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o [INFO] [stderr] [ 38%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o [INFO] [stderr] [ 38%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_util.c.o [INFO] [stderr] [ 38%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o [INFO] [stderr] [ 39%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o [INFO] [stderr] [ 40%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/common.c.o [INFO] [stderr] [ 41%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeFiles/zlib.dir/zutil.c.o [INFO] [stderr] [ 41%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_buffer_encoder.c.o [INFO] [stderr] [ 42%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o [INFO] [stderr] [ 42%] Built target zlib [INFO] [stderr] [ 43%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_decoder_memusage.c.o [INFO] [stderr] [ 43%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o [INFO] [stderr] [ 43%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder.c.o [INFO] [stderr] [ 43%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o [INFO] [stderr] [ 44%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder_memusage.c.o [INFO] [stderr] [ 45%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o [INFO] [stderr] [ 45%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_preset.c.o [INFO] [stderr] [ 46%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_decoder.c.o [INFO] [stderr] [ 47%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_encoder.c.o [INFO] [stderr] [ 47%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_common.c.o [INFO] [stderr] [ 48%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_decoder.c.o [INFO] [stderr] [ 48%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_encoder.c.o [INFO] [stderr] [ 49%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_decoder.c.o [INFO] [stderr] [ 49%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_encoder.c.o [INFO] [stderr] [ 49%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o [INFO] [stderr] [ 50%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index.c.o [INFO] [stderr] [ 50%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_decoder.c.o [INFO] [stderr] [ 51%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_encoder.c.o [INFO] [stderr] [ 52%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_hash.c.o [INFO] [stderr] [ 52%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_decoder.c.o [INFO] [stderr] [ 53%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_encoder.c.o [INFO] [stderr] [ 53%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_decoder.c.o [INFO] [stderr] [ 53%] Built target tng_io [INFO] [stderr] [ 53%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_common.c.o [INFO] [stderr] [ 54%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_encoder.c.o [INFO] [stderr] [ 55%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_decoder.c.o [INFO] [stderr] [ 55%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_encoder.c.o [INFO] [stderr] [ 56%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_decoder.c.o [INFO] [stderr] [ 57%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_encoder.c.o [INFO] [stderr] [ 58%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_size.c.o [INFO] [stderr] [ 58%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_common.c.o [INFO] [stderr] [ 58%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_decoder.c.o [INFO] [stderr] [ 59%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_encoder.c.o [INFO] [stderr] [ 60%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_decoder.c.o [INFO] [stderr] [ 60%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder.c.o [INFO] [stderr] [ 60%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder_mf.c.o [INFO] [stderr] [ 61%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/fastpos_table.c.o [INFO] [stderr] [ 62%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_decoder.c.o [INFO] [stderr] [ 62%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_encoder.c.o [INFO] [stderr] [ 63%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_decoder.c.o [INFO] [stderr] [ 63%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder.c.o [INFO] [stderr] [ 64%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_fast.c.o [INFO] [stderr] [ 64%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_normal.c.o [INFO] [stderr] [ 65%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_presets.c.o [INFO] [stderr] [ 65%] Built target pugixml [INFO] [stderr] [ 65%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/rangecoder/price_table.c.o [INFO] [stderr] [ 66%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/arm.c.o [INFO] [stderr] [ 67%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/armthumb.c.o [INFO] [stderr] [ 67%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/ia64.c.o [INFO] [stderr] [ 68%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/powerpc.c.o [INFO] [stderr] [ 69%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_decoder.c.o [INFO] [stderr] [ 69%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_coder.c.o [INFO] [stderr] [ 69%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_encoder.c.o [INFO] [stderr] [ 69%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/x86.c.o [INFO] [stderr] [ 70%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/sparc.c.o [INFO] [stderr] [ 70%] Built target lzma [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at chemfiles/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/zlib/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/lzma/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/bzip2/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/fmt/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/tng/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/molfiles/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] gmake[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [/opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/build.make:76: /opt/rustwide/target/debug/build/chemfiles-sys-39a0549b66a238d0/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:403: chemfiles/external/fmt/CMakeFiles/fmt.dir/all] Error 2 [INFO] [stderr] gmake[1]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:136: all] Error 2 [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.54/src/lib.rs:1119:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5a1bd4b15f52 - std::backtrace_rs::backtrace::libunwind::trace::h008577c7e44e203d [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5a1bd4b15f52 - std::backtrace_rs::backtrace::trace_unsynchronized::h560b3af3e5ff6c67 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5a1bd4b15f52 - std::sys::backtrace::_print_fmt::ha81bae09de6070c1 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5a1bd4b15f52 - ::fmt::h71552e9a121535c9 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5a1bd4b37e23 - core::fmt::rt::Argument::fmt::hbc372588fa9c41d7 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/core/src/fmt/rt.rs:179:76 [INFO] [stderr] 5: 0x5a1bd4b37e23 - core::fmt::write::hb0f01dc8dc29158b [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/core/src/fmt/mod.rs:1481:25 [INFO] [stderr] 6: 0x5a1bd4b12b33 - std::io::default_write_fmt::h417c23fc508ec0c4 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5a1bd4b12b33 - std::io::Write::write_fmt::h6eb5b22ba5716526 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/io/mod.rs:1914:13 [INFO] [stderr] 8: 0x5a1bd4b15da2 - std::sys::backtrace::BacktraceLock::print::he9bd1001b16a14f5 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5a1bd4b17242 - std::panicking::default_hook::{{closure}}::hce5a2fa275590e2e [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:300:22 [INFO] [stderr] 10: 0x5a1bd4b17045 - std::panicking::default_hook::h70332a090f0ecf15 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x5a1bd4b17c22 - std::panicking::rust_panic_with_hook::h91efd5df4c734150 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x5a1bd4b179aa - std::panicking::begin_panic_handler::{{closure}}::h12c91c0d9c2af036 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:706:13 [INFO] [stderr] 13: 0x5a1bd4b16449 - std::sys::backtrace::__rust_end_short_backtrace::h5c0b26e3358a5547 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/sys/backtrace.rs:168:18 [INFO] [stderr] 14: 0x5a1bd4b1763d - __rustc[994c55f15d7c45b8]::rust_begin_unwind [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x5a1bd4b36cb0 - core::panicking::panic_fmt::hdd1bbddd471fde9e [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5a1bd4a8674b - cmake::fail::hbd50d14da12bf4e1 [INFO] [stderr] 17: 0x5a1bd4a85fb2 - cmake::run::hcd1470f7f3b2227d [INFO] [stderr] 18: 0x5a1bd4a82a88 - cmake::Config::build::h191c80badbf77f30 [INFO] [stderr] 19: 0x5a1bd4a7d198 - build_script_build::build_chemfiles::h13c377fae6bfba12 [INFO] [stderr] 20: 0x5a1bd4a7c633 - build_script_build::main::h721e9a28fc90125c [INFO] [stderr] 21: 0x5a1bd4a7a9b3 - core::ops::function::FnOnce::call_once::h0556312b8252ba49 [INFO] [stderr] 22: 0x5a1bd4a7a936 - std::sys::backtrace::__rust_begin_short_backtrace::h0aa532d013e4d41a [INFO] [stderr] 23: 0x5a1bd4a7a8b9 - std::rt::lang_start::{{closure}}::he20801fb64b8c340 [INFO] [stderr] 24: 0x5a1bd4b0e7a0 - core::ops::function::impls:: for &F>::call_once::h8199e3d9bdbdd811 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 25: 0x5a1bd4b0e7a0 - std::panicking::try::do_call::h64912e4d03b46a62 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:589:40 [INFO] [stderr] 26: 0x5a1bd4b0e7a0 - std::panicking::try::h1159a22d5534b30b [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:552:19 [INFO] [stderr] 27: 0x5a1bd4b0e7a0 - std::panic::catch_unwind::h428242e4c59cdb24 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5a1bd4b0e7a0 - std::rt::lang_start_internal::{{closure}}::h1548c9191f8fa3c2 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/rt.rs:168:24 [INFO] [stderr] 29: 0x5a1bd4b0e7a0 - std::panicking::try::do_call::he1ed23889dd160bd [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:589:40 [INFO] [stderr] 30: 0x5a1bd4b0e7a0 - std::panicking::try::h39321628fc04f193 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panicking.rs:552:19 [INFO] [stderr] 31: 0x5a1bd4b0e7a0 - std::panic::catch_unwind::h05eee1d44d9687ab [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/panic.rs:359:14 [INFO] [stderr] 32: 0x5a1bd4b0e7a0 - std::rt::lang_start_internal::h279959fcd76d5e23 [INFO] [stderr] at /rustc/0e517d38ad0e72f93c734b14fabd4bb9b7441de6/library/std/src/rt.rs:164:5 [INFO] [stderr] 33: 0x5a1bd4a7a8a1 - std::rt::lang_start::h48dcbe104c0f94ae [INFO] [stderr] 34: 0x5a1bd4a7dc15 - main [INFO] [stderr] 35: 0x7b77483821ca - [INFO] [stderr] 36: 0x7b774838228b - __libc_start_main [INFO] [stderr] 37: 0x5a1bd4a7a6d5 - _start [INFO] [stderr] 38: 0x0 - [INFO] running `Command { std: "docker" "inspect" "0eff34f618e713ec976d83dbff89f5fad374ed8ea9239ea484222327201d6139", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0eff34f618e713ec976d83dbff89f5fad374ed8ea9239ea484222327201d6139", kill_on_drop: false }` [INFO] [stdout] 0eff34f618e713ec976d83dbff89f5fad374ed8ea9239ea484222327201d6139