[INFO] cloning repository https://github.com/tfursten/RNAsieve
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tfursten/RNAsieve" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2FRNAsieve", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2FRNAsieve'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 27c1aa697b3f0317d4bda6a1f9ee84ea04de8f13
[INFO] checking tfursten/RNAsieve against master#0e517d38ad0e72f93c734b14fabd4bb9b7441de6 for pr-140557-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2FRNAsieve" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/tfursten/RNAsieve on toolchain 0e517d38ad0e72f93c734b14fabd4bb9b7441de6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/tfursten/RNAsieve
[INFO] finished tweaking git repo https://github.com/tfursten/RNAsieve
[INFO] tweaked toml for git repo https://github.com/tfursten/RNAsieve written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/tfursten/RNAsieve already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v1.0.94
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[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded num-rational v0.4.2
[INFO] [stderr]   Downloaded bincode v1.3.3
[INFO] [stderr]   Downloaded anyhow v1.0.97
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded indexmap v2.8.0
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded itertools v0.11.0
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded libm v0.2.11
[INFO] [stderr]   Downloaded aho-corasick v1.1.3
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded clap_builder v4.5.34
[INFO] [stderr]   Downloaded cc v1.2.17
[INFO] [stderr]   Downloaded zerocopy v0.8.24
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[INFO] [stderr]   Downloaded regex v1.11.1
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[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded wide v0.7.32
[INFO] [stderr]   Downloaded typenum v1.18.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.24
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[INFO] [stderr]   Downloaded num-traits v0.2.19
[INFO] [stderr]   Downloaded anstream v0.6.18
[INFO] [stderr]   Downloaded clap v4.5.34
[INFO] [stderr]   Downloaded miniz_oxide v0.8.5
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded regex-automata v0.4.9
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded bytemuck v1.22.0
[INFO] [stderr]   Downloaded clap_derive v4.5.32
[INFO] [stderr]   Downloaded strum_macros v0.26.4
[INFO] [stderr]   Downloaded petgraph v0.6.5
[INFO] [stderr]   Downloaded libc v0.2.171
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded csv v1.3.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded num-complex v0.4.6
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded serde_derive v1.0.219
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded bit-set v0.5.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded fixedbitset v0.4.2
[INFO] [stderr]   Downloaded paste v1.0.15
[INFO] [stderr]   Downloaded colorchoice v1.0.3
[INFO] [stderr]   Downloaded utf8parse v0.2.2
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded bytecount v0.6.8
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded csv-core v0.1.12
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded either v1.15.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded approx v0.5.1
[INFO] [stderr]   Downloaded strum v0.25.0
[INFO] [stderr]   Downloaded rustversion v1.0.20
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded anstyle-query v1.1.2
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.7
[INFO] [stderr]   Downloaded is_terminal_polyfill v1.70.1
[INFO] [stderr]   Downloaded anstyle v1.0.10
[INFO] [stderr]   Downloaded clap_lex v0.7.4
[INFO] [stderr]   Downloaded strsim v0.11.1
[INFO] [stderr]   Downloaded heck v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7bde59718646af4fe1251b91d1049a864ced97f22e951229c5f12bcff9797c77
[INFO] running `Command { std: "docker" "start" "-a" "7bde59718646af4fe1251b91d1049a864ced97f22e951229c5f12bcff9797c77", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7bde59718646af4fe1251b91d1049a864ced97f22e951229c5f12bcff9797c77", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7bde59718646af4fe1251b91d1049a864ced97f22e951229c5f12bcff9797c77", kill_on_drop: false }`
[INFO] [stdout] 7bde59718646af4fe1251b91d1049a864ced97f22e951229c5f12bcff9797c77
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+0e517d38ad0e72f93c734b14fabd4bb9b7441de6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a1e7965e534e356239bdb97914c586b5dc623180b9e302c38d07aa5b7ed678bd
[INFO] running `Command { std: "docker" "start" "-a" "a1e7965e534e356239bdb97914c586b5dc623180b9e302c38d07aa5b7ed678bd", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling zerocopy v0.8.24
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]     Checking bytemuck v1.22.0
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling cc v1.2.17
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking regex-syntax v0.8.5
[INFO] [stderr]     Checking anstyle-parse v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]     Checking colorchoice v1.0.3
[INFO] [stderr]     Checking wide v0.7.32
[INFO] [stderr]    Compiling anyhow v1.0.97
[INFO] [stderr]     Checking anstyle-query v1.1.2
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]     Checking equivalent v1.0.2
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking miniz_oxide v0.8.5
[INFO] [stderr]     Checking anstream v0.6.18
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]     Checking ryu v1.0.20
[INFO] [stderr]     Checking itoa v1.0.15
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking clap_builder v4.5.34
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking flate2 v1.1.1
[INFO] [stderr]     Checking indexmap v2.8.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v4.5.34
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking RNAsieve v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 50.69s
[INFO] running `Command { std: "docker" "inspect" "a1e7965e534e356239bdb97914c586b5dc623180b9e302c38d07aa5b7ed678bd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a1e7965e534e356239bdb97914c586b5dc623180b9e302c38d07aa5b7ed678bd", kill_on_drop: false }`
[INFO] [stdout] a1e7965e534e356239bdb97914c586b5dc623180b9e302c38d07aa5b7ed678bd