[INFO] cloning repository https://github.com/pairwise-alignment/bam2seq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pairwise-alignment/bam2seq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cdfd68a0987341fc16df170245bca58fd044479b
[INFO] checking pairwise-alignment/bam2seq against try#cd420d8bda33494ba3cc45048d5f067484a32b94 for pr-140209-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/pairwise-alignment/bam2seq on toolchain cd420d8bda33494ba3cc45048d5f067484a32b94
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] finished tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] tweaked toml for git repo https://github.com/pairwise-alignment/bam2seq written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/pairwise-alignment/bam2seq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking pairwise-alignment/bam2seq against try#cd420d8bda33494ba3cc45048d5f067484a32b94 for pr-140209-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/pairwise-alignment/bam2seq on toolchain cd420d8bda33494ba3cc45048d5f067484a32b94
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] finished tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] tweaked toml for git repo https://github.com/pairwise-alignment/bam2seq written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/pairwise-alignment/bam2seq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking pairwise-alignment/bam2seq against try#cd420d8bda33494ba3cc45048d5f067484a32b94 for pr-140209-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/pairwise-alignment/bam2seq on toolchain cd420d8bda33494ba3cc45048d5f067484a32b94
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] finished tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] tweaked toml for git repo https://github.com/pairwise-alignment/bam2seq written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/pairwise-alignment/bam2seq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking pairwise-alignment/bam2seq against try#cd420d8bda33494ba3cc45048d5f067484a32b94 for pr-140209-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpairwise-alignment%2Fbam2seq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/pairwise-alignment/bam2seq on toolchain cd420d8bda33494ba3cc45048d5f067484a32b94
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] finished tweaking git repo https://github.com/pairwise-alignment/bam2seq
[INFO] tweaked toml for git repo https://github.com/pairwise-alignment/bam2seq written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/pairwise-alignment/bam2seq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded once_cell v1.13.0
[INFO] [stderr]   Downloaded clap_derive v3.2.15
[INFO] [stderr]   Downloaded bam v0.1.4
[INFO] [stderr]   Downloaded os_str_bytes v6.2.0
[INFO] [stderr]   Downloaded flate2 v1.0.24
[INFO] [stderr]   Downloaded clap v3.2.16
[INFO] [stderr]   Downloaded libc v0.2.129
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 534173a13d50430f53497f71cd51a99afe6a418ae259bc25e4ddffecee744c42
[INFO] running `Command { std: "docker" "start" "-a" "534173a13d50430f53497f71cd51a99afe6a418ae259bc25e4ddffecee744c42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "534173a13d50430f53497f71cd51a99afe6a418ae259bc25e4ddffecee744c42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "534173a13d50430f53497f71cd51a99afe6a418ae259bc25e4ddffecee744c42", kill_on_drop: false }`
[INFO] [stdout] 534173a13d50430f53497f71cd51a99afe6a418ae259bc25e4ddffecee744c42
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+cd420d8bda33494ba3cc45048d5f067484a32b94" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 43b98f02dd81ae64383904584635fcc18a7b7eadb766ce018c4c41b3e7f8d324
[INFO] running `Command { std: "docker" "start" "-a" "43b98f02dd81ae64383904584635fcc18a7b7eadb766ce018c4c41b3e7f8d324", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.43
[INFO] [stderr]    Compiling unicode-ident v1.0.3
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling libc v0.2.129
[INFO] [stderr]    Compiling syn v1.0.99
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]     Checking miniz_oxide v0.5.1
[INFO] [stderr]     Checking crc32fast v1.3.2
[INFO] [stderr]     Checking os_str_bytes v6.2.0
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking once_cell v1.13.0
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]     Checking bam v0.1.4
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.2.15
[INFO] [stderr]     Checking clap v3.2.16
[INFO] [stderr]     Checking bam2seq v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.19s
[INFO] running `Command { std: "docker" "inspect" "43b98f02dd81ae64383904584635fcc18a7b7eadb766ce018c4c41b3e7f8d324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43b98f02dd81ae64383904584635fcc18a7b7eadb766ce018c4c41b3e7f8d324", kill_on_drop: false }`
[INFO] [stdout] 43b98f02dd81ae64383904584635fcc18a7b7eadb766ce018c4c41b3e7f8d324