[INFO] cloning repository https://github.com/stela2502/hmm_mapper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/hmm_mapper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bc70f7df8c7b05abcb77a4e29f93145fc54d3cfb [INFO] checking stela2502/hmm_mapper against master#fe348cd1a8e0fa445b772393147ed865904dcd4d for pr-139587-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stela2502/hmm_mapper on toolchain fe348cd1a8e0fa445b772393147ed865904dcd4d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fe348cd1a8e0fa445b772393147ed865904dcd4d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stela2502/hmm_mapper [INFO] finished tweaking git repo https://github.com/stela2502/hmm_mapper [INFO] tweaked toml for git repo https://github.com/stela2502/hmm_mapper written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/stela2502/hmm_mapper already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fe348cd1a8e0fa445b772393147ed865904dcd4d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clap_derive v3.2.25 [INFO] [stderr] Downloaded needletail v0.4.1 [INFO] [stderr] Downloaded buf_redux v0.8.4 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded cc v1.1.15 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+fe348cd1a8e0fa445b772393147ed865904dcd4d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4ff6815affbc94f381e1568da395b0fa9dbfe07e3c2a1d7acb91ca35fe4a167d [INFO] running `Command { std: "docker" "start" "-a" "4ff6815affbc94f381e1568da395b0fa9dbfe07e3c2a1d7acb91ca35fe4a167d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4ff6815affbc94f381e1568da395b0fa9dbfe07e3c2a1d7acb91ca35fe4a167d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4ff6815affbc94f381e1568da395b0fa9dbfe07e3c2a1d7acb91ca35fe4a167d", kill_on_drop: false }` [INFO] [stdout] 4ff6815affbc94f381e1568da395b0fa9dbfe07e3c2a1d7acb91ca35fe4a167d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+fe348cd1a8e0fa445b772393147ed865904dcd4d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e875130e0d2efd89afb9487b730392be2c663b31c3154710cdf576f148c4d785 [INFO] running `Command { std: "docker" "start" "-a" "e875130e0d2efd89afb9487b730392be2c663b31c3154710cdf576f148c4d785", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.1.15 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking os_str_bytes v6.6.1 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Checking miniz_oxide v0.8.0 [INFO] [stderr] Checking hashbrown v0.12.3 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking textwrap v0.16.1 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking termcolor v1.4.1 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking clap_lex v0.2.4 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Checking flate2 v1.0.33 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking needletail v0.4.1 [INFO] [stderr] Compiling clap_derive v3.2.25 [INFO] [stderr] Checking clap v3.2.25 [INFO] [stderr] Checking hmm_mapper v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused label [INFO] [stdout] --> src/HMM.rs:318:9 [INFO] [stdout] | [INFO] [stdout] 318 | 'main: for t in start+1..this_end { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_labels)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused label [INFO] [stdout] --> src/HMM.rs:318:9 [INFO] [stdout] | [INFO] [stdout] 318 | 'main: for t in start+1..this_end { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_labels)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `other` [INFO] [stdout] --> src/HMM.rs:128:13 [INFO] [stdout] | [INFO] [stdout] 128 | other => { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_other` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `other` [INFO] [stdout] --> src/HMM.rs:128:13 [INFO] [stdout] | [INFO] [stdout] 128 | other => { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_other` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_prob` [INFO] [stdout] --> src/HMM.rs:336:13 [INFO] [stdout] | [INFO] [stdout] 336 | let total_prob = (max_final_prob).exp() ; [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/HMM.rs:339:13 [INFO] [stdout] | [INFO] [stdout] 339 | let mut result: Vec<(String, f64)> = self.names.iter() [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_prob` [INFO] [stdout] --> src/HMM.rs:336:13 [INFO] [stdout] | [INFO] [stdout] 336 | let total_prob = (max_final_prob).exp() ; [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/HMM.rs:339:13 [INFO] [stdout] | [INFO] [stdout] 339 | let mut result: Vec<(String, f64)> = self.names.iter() [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:37:6 [INFO] [stdout] | [INFO] [stdout] 37 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:37:6 [INFO] [stdout] | [INFO] [stdout] 34 | Chain::V => 0, [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 35 | Chain::D => panic!("A light chain has no D segement!"), [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 36 | Chain::J => data[0], [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 37 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 60 | SequenceModel::IGH => 0, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 61 | SequenceModel::IGL => 1, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 62 | SequenceModel::IGK => 2, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 63 | SequenceModel::TRA => 3, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 67 | _ => unreachable!(), [INFO] [stdout] | ^ ...and 3 other patterns collectively make this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:99:13 [INFO] [stdout] | [INFO] [stdout] 99 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:99:13 [INFO] [stdout] | [INFO] [stdout] 91 | SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => { [INFO] [stdout] | ----------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 95 | SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => { [INFO] [stdout] | --------------------------------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 99 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 105 | SequenceModel::IGH => "IGH-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 106 | SequenceModel::IGL => "IGL-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 107 | SequenceModel::IGK => "IGK-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 108 | SequenceModel::TRA => "TRA-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 112 | _ => unreachable!(), [INFO] [stdout] | ^ ...and 3 other patterns collectively make this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:124:4 [INFO] [stdout] | [INFO] [stdout] 124 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:124:4 [INFO] [stdout] | [INFO] [stdout] 118 | SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => { [INFO] [stdout] | ------------------------------------------------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 121 | SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => { [INFO] [stdout] | --------------------------------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 124 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:37:6 [INFO] [stdout] | [INFO] [stdout] 37 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:37:6 [INFO] [stdout] | [INFO] [stdout] 34 | Chain::V => 0, [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 35 | Chain::D => panic!("A light chain has no D segement!"), [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 36 | Chain::J => data[0], [INFO] [stdout] | -------- matches some of the same values [INFO] [stdout] 37 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 60 | SequenceModel::IGH => 0, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 61 | SequenceModel::IGL => 1, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 62 | SequenceModel::IGK => 2, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 63 | SequenceModel::TRA => 3, [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 67 | _ => unreachable!(), [INFO] [stdout] | ^ ...and 3 other patterns collectively make this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:99:13 [INFO] [stdout] | [INFO] [stdout] 99 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:99:13 [INFO] [stdout] | [INFO] [stdout] 91 | SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => { [INFO] [stdout] | ----------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 95 | SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => { [INFO] [stdout] | --------------------------------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 99 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 105 | SequenceModel::IGH => "IGH-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 106 | SequenceModel::IGL => "IGL-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 107 | SequenceModel::IGK => "IGK-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] 108 | SequenceModel::TRA => "TRA-VDJ".to_string(), [INFO] [stdout] | ------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 112 | _ => unreachable!(), [INFO] [stdout] | ^ ...and 3 other patterns collectively make this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/VDJmodeler.rs:124:4 [INFO] [stdout] | [INFO] [stdout] 124 | _ => unreachable!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/VDJmodeler.rs:124:4 [INFO] [stdout] | [INFO] [stdout] 118 | SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => { [INFO] [stdout] | ------------------------------------------------------------ matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 121 | SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => { [INFO] [stdout] | --------------------------------------------------------------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 124 | _ => unreachable!(), [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/VDJmodeler.rs:289:22 [INFO] [stdout] | [INFO] [stdout] 289 | let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum()); [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `HMM` should have a snake case name [INFO] [stdout] --> src/lib.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod HMM; [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `hmm` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `VDJmodeler` should have a snake case name [INFO] [stdout] --> src/lib.rs:3:9 [INFO] [stdout] | [INFO] [stdout] 3 | pub mod VDJmodeler; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/VDJmodeler.rs:289:22 [INFO] [stdout] | [INFO] [stdout] 289 | let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum()); [INFO] [stdout] | ----^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `HMM` should have a snake case name [INFO] [stdout] --> src/lib.rs:1:9 [INFO] [stdout] | [INFO] [stdout] 1 | pub mod HMM; [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `hmm` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module `VDJmodeler` should have a snake case name [INFO] [stdout] --> src/lib.rs:3:9 [INFO] [stdout] | [INFO] [stdout] 3 | pub mod VDJmodeler; [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord` [INFO] [stdout] --> src/main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use needletail::parser::SequenceRecord; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::BufReader` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::io::BufReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord` [INFO] [stdout] --> src/main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use needletail::parser::SequenceRecord; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::BufReader` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::io::BufReader; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `record_count` is assigned to, but never used [INFO] [stdout] --> src/main.rs:79:13 [INFO] [stdout] | [INFO] [stdout] 79 | let mut record_count = 0; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_record_count` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `record_count` is assigned to, but never used [INFO] [stdout] --> src/main.rs:79:13 [INFO] [stdout] | [INFO] [stdout] 79 | let mut record_count = 0; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_record_count` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 13.63s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "e875130e0d2efd89afb9487b730392be2c663b31c3154710cdf576f148c4d785", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e875130e0d2efd89afb9487b730392be2c663b31c3154710cdf576f148c4d785", kill_on_drop: false }` [INFO] [stdout] e875130e0d2efd89afb9487b730392be2c663b31c3154710cdf576f148c4d785