[INFO] cloning repository https://github.com/bioforensics/mhrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bioforensics/mhrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7bb946a0170bba0b2b6212f7eb1dc96e0e3777ec
[INFO] checking bioforensics/mhrs against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-139493-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/bioforensics/mhrs
[INFO] finished tweaking git repo https://github.com/bioforensics/mhrs
[INFO] tweaked toml for git repo https://github.com/bioforensics/mhrs written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/bioforensics/mhrs on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/bioforensics/mhrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded counter v0.5.7
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded clap v4.5.35
[INFO] [stderr]   Downloaded icu_normalizer_data v1.5.1
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded icu_locid_transform_data v1.5.1
[INFO] [stderr]   Downloaded smallvec v1.15.0
[INFO] [stderr]   Downloaded clap_builder v4.5.35
[INFO] [stderr]   Downloaded icu_properties_data v1.5.1
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded openssl-src v300.2.3+3.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a1ad309431b91e0937617588446ed55da4dc05bcd86482f6ca7a2f9909992ffa
[INFO] running `Command { std: "docker" "start" "-a" "a1ad309431b91e0937617588446ed55da4dc05bcd86482f6ca7a2f9909992ffa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a1ad309431b91e0937617588446ed55da4dc05bcd86482f6ca7a2f9909992ffa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a1ad309431b91e0937617588446ed55da4dc05bcd86482f6ca7a2f9909992ffa", kill_on_drop: false }`
[INFO] [stdout] a1ad309431b91e0937617588446ed55da4dc05bcd86482f6ca7a2f9909992ffa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9e6b3f1c978a268ee19c861963d6939b7b8fd0d5056fc845e8d2983f729a6ffe
[INFO] running `Command { std: "docker" "start" "-a" "9e6b3f1c978a268ee19c861963d6939b7b8fd0d5056fc845e8d2983f729a6ffe", kill_on_drop: false }`
[INFO] [stderr]     Checking memchr v2.7.1
[INFO] [stderr]     Checking litemap v0.7.5
[INFO] [stderr]    Compiling icu_locid_transform_data v1.5.1
[INFO] [stderr]    Compiling icu_properties_data v1.5.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling syn v2.0.52
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling icu_normalizer_data v1.5.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.57
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking anstyle-parse v0.2.6
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling jobserver v0.1.28
[INFO] [stderr]     Checking aho-corasick v1.1.2
[INFO] [stderr]    Compiling cc v1.0.89
[INFO] [stderr]     Checking smallvec v1.15.0
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]     Checking colorchoice v1.0.3
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking anstream v0.6.15
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking clap_builder v4.5.35
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking counter v0.5.7
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v300.2.3+3.2.1
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]    Compiling openssl-sys v0.9.101
[INFO] [stderr]    Compiling libz-sys v1.1.15
[INFO] [stderr]    Compiling curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking regex v1.10.3
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.57
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]     Checking clap v4.5.35
[INFO] [stderr]     Checking tinystr v0.7.6
[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking serde v1.0.197
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking rust-htslib v0.46.0
[INFO] [stderr]     Checking mhrs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/panel.rs:42:17
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn iter(&self) -> hash_map::Iter<String, AlleleDefinition> {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn iter(&self) -> hash_map::Iter<'_, String, AlleleDefinition> {
[INFO] [stdout]    |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/panel.rs:42:17
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn iter(&self) -> hash_map::Iter<String, AlleleDefinition> {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn iter(&self) -> hash_map::Iter<'_, String, AlleleDefinition> {
[INFO] [stdout]    |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 58s
[INFO] running `Command { std: "docker" "inspect" "9e6b3f1c978a268ee19c861963d6939b7b8fd0d5056fc845e8d2983f729a6ffe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9e6b3f1c978a268ee19c861963d6939b7b8fd0d5056fc845e8d2983f729a6ffe", kill_on_drop: false }`
[INFO] [stdout] 9e6b3f1c978a268ee19c861963d6939b7b8fd0d5056fc845e8d2983f729a6ffe