[INFO] fetching crate cytos 1.2.1...
[INFO] checking cytos-1.2.1 against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-139493-3
[INFO] extracting crate cytos 1.2.1 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate cytos 1.2.1
[INFO] finished tweaking crates.io crate cytos 1.2.1
[INFO] tweaked toml for crates.io crate cytos 1.2.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate cytos 1.2.1 on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate cytos 1.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded errno v0.3.7
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded serde v1.0.192
[INFO] [stderr]   Downloaded num-complex v0.4.4
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded env_logger v0.10.1
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded wide v0.7.13
[INFO] [stderr]   Downloaded serde_derive v1.0.192
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.4.0
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded rustix v0.38.24
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.11
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] da145717a9663885157623b4053bf71dc6fab180c4d76402579a12ebc4fe501d
[INFO] running `Command { std: "docker" "start" "-a" "da145717a9663885157623b4053bf71dc6fab180c4d76402579a12ebc4fe501d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "da145717a9663885157623b4053bf71dc6fab180c4d76402579a12ebc4fe501d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da145717a9663885157623b4053bf71dc6fab180c4d76402579a12ebc4fe501d", kill_on_drop: false }`
[INFO] [stdout] da145717a9663885157623b4053bf71dc6fab180c4d76402579a12ebc4fe501d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7a6599d4f8992edde134e1aa1a0c79f23d1ad23ad27311d95291fca771f16d1c
[INFO] running `Command { std: "docker" "start" "-a" "7a6599d4f8992edde134e1aa1a0c79f23d1ad23ad27311d95291fca771f16d1c", kill_on_drop: false }`
[INFO] [stderr]     Checking memchr v2.6.4
[INFO] [stderr]    Compiling serde v1.0.192
[INFO] [stderr]     Checking bytemuck v1.14.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]    Compiling libc v0.2.150
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling syn v2.0.39
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rustix v0.38.24
[INFO] [stderr]     Checking anstyle-parse v0.2.2
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking hashbrown v0.14.2
[INFO] [stderr]     Checking linux-raw-sys v0.4.11
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]     Checking anstream v0.6.4
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking clap_builder v4.4.8
[INFO] [stderr]     Checking iana-time-zone v0.1.58
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking termcolor v1.4.0
[INFO] [stderr]     Checking wide v0.7.13
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v1.1.2
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking getrandom v0.2.11
[INFO] [stderr]     Checking indexmap v2.1.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking is-terminal v0.4.9
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking num-complex v0.4.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking chrono v0.4.31
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking num-rational v0.4.1
[INFO] [stderr]     Checking regex-automata v0.4.3
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking regex v1.10.2
[INFO] [stderr]     Checking env_logger v0.10.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]    Compiling serde_derive v1.0.192
[INFO] [stderr]    Compiling thiserror-impl v1.0.50
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.4.7
[INFO] [stderr]     Checking thiserror v1.0.50
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking clap v4.4.8
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.4.0
[INFO] [stderr]     Checking cytos v1.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 40.56s
[INFO] running `Command { std: "docker" "inspect" "7a6599d4f8992edde134e1aa1a0c79f23d1ad23ad27311d95291fca771f16d1c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a6599d4f8992edde134e1aa1a0c79f23d1ad23ad27311d95291fca771f16d1c", kill_on_drop: false }`
[INFO] [stdout] 7a6599d4f8992edde134e1aa1a0c79f23d1ad23ad27311d95291fca771f16d1c
