[INFO] cloning repository https://github.com/bluenote-1577/vartig-utils
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/vartig-utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fvartig-utils", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fvartig-utils'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d85485ae18c17ca3aafb37502f2bb81c9d04bea5
[INFO] checking bluenote-1577/vartig-utils against try#b1f2594eac607c1f051534800237eeedb5590a49 for pr-139493-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fvartig-utils" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/bluenote-1577/vartig-utils
[INFO] finished tweaking git repo https://github.com/bluenote-1577/vartig-utils
[INFO] tweaked toml for git repo https://github.com/bluenote-1577/vartig-utils written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/bluenote-1577/vartig-utils on toolchain b1f2594eac607c1f051534800237eeedb5590a49
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b1f2594eac607c1f051534800237eeedb5590a49" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/bluenote-1577/vartig-utils already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b1f2594eac607c1f051534800237eeedb5590a49" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+b1f2594eac607c1f051534800237eeedb5590a49" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 507e0afddfd521c7d666b64f2b33c9c7da704ad6a09c2890caf2fee6f353bd61
[INFO] running `Command { std: "docker" "start" "-a" "507e0afddfd521c7d666b64f2b33c9c7da704ad6a09c2890caf2fee6f353bd61", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "507e0afddfd521c7d666b64f2b33c9c7da704ad6a09c2890caf2fee6f353bd61", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "507e0afddfd521c7d666b64f2b33c9c7da704ad6a09c2890caf2fee6f353bd61", kill_on_drop: false }`
[INFO] [stdout] 507e0afddfd521c7d666b64f2b33c9c7da704ad6a09c2890caf2fee6f353bd61
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+b1f2594eac607c1f051534800237eeedb5590a49" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 18aa0caa2c9804837de3a8cad54e22454e1e1a150e0be06e55212cab6c0cb50b
[INFO] running `Command { std: "docker" "start" "-a" "18aa0caa2c9804837de3a8cad54e22454e1e1a150e0be06e55212cab6c0cb50b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]     Checking memchr v2.6.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]     Checking regex-syntax v0.7.5
[INFO] [stderr]    Compiling thiserror v1.0.48
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]     Checking unicode-bidi v0.3.13
[INFO] [stderr]    Compiling syn v2.0.37
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]     Checking percent-encoding v2.3.0
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking os_str_bytes v6.4.1
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking textwrap v0.16.0
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[INFO] [stderr]     Checking num_cpus v1.16.0
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[INFO] [stderr]     Checking termcolor v1.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
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[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking either v1.9.0
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[INFO] [stderr]     Checking idna v0.4.0
[INFO] [stderr]     Checking clap v3.2.23
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking url v2.4.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking ordered-float v2.10.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]    Compiling thiserror-impl v1.0.48
[INFO] [stderr]    Compiling strum_macros v0.25.2
[INFO] [stderr]     Checking regex-automata v0.3.8
[INFO] [stderr]     Checking regex v1.9.5
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking vtig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `Hash` and `Hasher`
[INFO] [stdout]  --> src/vartig.rs:4:17
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::hash::{Hash, Hasher};
[INFO] [stdout]   |                 ^^^^  ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Hash` and `Hasher`
[INFO] [stdout]  --> src/vartig.rs:4:17
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::hash::{Hash, Hasher};
[INFO] [stdout]   |                 ^^^^  ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `other_vcf_snppos_to_pos` is assigned to, but never used
[INFO] [stdout]   --> src/vartig.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     let other_vcf_snppos_to_pos;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_other_vcf_snppos_to_pos` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `other_vcf_snppos_to_pos` is assigned to, but never used
[INFO] [stdout]   --> src/vartig.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     let other_vcf_snppos_to_pos;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_other_vcf_snppos_to_pos` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `other_vcf_snppos_to_pos` is never read
[INFO] [stdout]   --> src/vartig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         other_vcf_snppos_to_pos = HashMap::default();
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `other_vcf_snppos_to_pos` is never read
[INFO] [stdout]   --> src/vartig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         other_vcf_snppos_to_pos = HashMap::default();
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `other_vcf_snppos_to_pos` is never read
[INFO] [stdout]   --> src/vartig.rs:79:38
[INFO] [stdout]    |
[INFO] [stdout] 79 |         (other_vcf_snppos_to_allele, other_vcf_snppos_to_pos) = get_vcf_profile(other_vcf.unwrap())
[INFO] [stdout]    |                                      ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `other_vcf_snppos_to_pos` is never read
[INFO] [stdout]   --> src/vartig.rs:79:38
[INFO] [stdout]    |
[INFO] [stdout] 79 |         (other_vcf_snppos_to_allele, other_vcf_snppos_to_pos) = get_vcf_profile(other_vcf.unwrap())
[INFO] [stdout]    |                                      ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]    --> src/main.rs:165:21
[INFO] [stdout]     |
[INFO] [stdout] 165 |                 let x = sync.lock().unwrap();
[INFO] [stdout]     |                     ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `error_cutoff`
[INFO] [stdout]    --> src/main.rs:208:13
[INFO] [stdout]     |
[INFO] [stdout] 208 |         let error_cutoff = 0.0;
[INFO] [stdout]     |             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_error_cutoff`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cutoff_tig1_len`
[INFO] [stdout]    --> src/main.rs:283:13
[INFO] [stdout]     |
[INFO] [stdout] 283 |         let cutoff_tig1_len = tig1
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cutoff_tig1_len`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cutoff_tig2_len`
[INFO] [stdout]    --> src/main.rs:288:13
[INFO] [stdout]     |
[INFO] [stdout] 288 |         let cutoff_tig2_len = tig2
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cutoff_tig2_len`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]    --> src/main.rs:165:21
[INFO] [stdout]     |
[INFO] [stdout] 165 |                 let x = sync.lock().unwrap();
[INFO] [stdout]     |                     ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `error_cutoff`
[INFO] [stdout]    --> src/main.rs:208:13
[INFO] [stdout]     |
[INFO] [stdout] 208 |         let error_cutoff = 0.0;
[INFO] [stdout]     |             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_error_cutoff`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cutoff_tig1_len`
[INFO] [stdout]    --> src/main.rs:283:13
[INFO] [stdout]     |
[INFO] [stdout] 283 |         let cutoff_tig1_len = tig1
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cutoff_tig1_len`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cutoff_tig2_len`
[INFO] [stdout]    --> src/main.rs:288:13
[INFO] [stdout]     |
[INFO] [stdout] 288 |         let cutoff_tig2_len = tig2
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cutoff_tig2_len`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 47.21s
[INFO] running `Command { std: "docker" "inspect" "18aa0caa2c9804837de3a8cad54e22454e1e1a150e0be06e55212cab6c0cb50b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "18aa0caa2c9804837de3a8cad54e22454e1e1a150e0be06e55212cab6c0cb50b", kill_on_drop: false }`
[INFO] [stdout] 18aa0caa2c9804837de3a8cad54e22454e1e1a150e0be06e55212cab6c0cb50b
